Search

Precise neurosurgical guidance is critical for successful brain surgeries and plays a vital role in all phases of image-guided neurosurgery (IGN). Neuronavigation software enables real-time tracking of surgical tools, ensuring their presentation with high precision in relation to a virtual patient model. Therefore, this work focuses on the development of a novel multimodal IGN system, leveraging deep learning and explainable AI to enhance brain tumor surgery outcomes. The study establishes the clinical and technical requirements of the system for brain tumor surgeries. NeuroIGN adopts a modular architecture, including brain tumor segmentation, patient registration, and explainable output prediction, and integrates open-source packages into an interactive neuronavigational display. The NeuroIGN system components underwent validation and evaluation in both laboratory and simulated operating room (OR) settings. Experimental results demonstrated its accuracy in tumor segmentation and the success of ExplainAI in increasing the trust of medical professionals in deep learning. The proposed system was successfully assembled and set up within 11 min in a pre-clinical OR setting with a tracking accuracy of 0.5 (± 0.1) mm. NeuroIGN was also evaluated as highly useful, with a high frame rate (19 FPS) and real-time ultrasound imaging capabilities. In conclusion, this paper describes not only the development of an open-source multimodal IGN system but also demonstrates the innovative application of deep learning and explainable AI algorithms in enhancing neuronavigation for brain tumor surgeries. By seamlessly integrating pre- and intra-operative patient image data with cutting-edge interventional devices, our experiments underscore the potential for deep learning models to improve the surgical treatment of brain tumors and long-term post-operative outcomes. [ABSTRACT FROM AUTHOR]

Simple Summary: Brain MRI scans often require different imaging sequences based on tissue types, posing a common challenge. In our research, we propose a method that utilizes Generative Adversarial Networks (GAN) to translate T2-weighted-Fluid-attenuated-Inversion-Recovery (FLAIR) MRI volumes into T2-Weighted (T2W) volumes, and vice versa. To evaluate the effectiveness of our approach, we introduce a novel evaluation schema that incorporates radiomic features. We train two distinct GAN-based architectures, namely Cycle GAN and Dual Cycle-Consistent Adversarial network (DC2Anet), using 510 pair-slices from 102 patients. Our findings indicate that the generative methods can produce results similar to the original sequence without significant changes in radiometric features. This method has the potential to assist clinicians in making informed decisions based on generated images when alternative sequences are unavailable, or time constraints prevent re-scanning MRI patients. One of the most common challenges in brain MRI scans is to perform different MRI sequences depending on the type and properties of tissues. In this paper, we propose a generative method to translate T2-Weighted (T2W) Magnetic Resonance Imaging (MRI) volume from T2-weight-Fluid-attenuated-Inversion-Recovery (FLAIR) and vice versa using Generative Adversarial Networks (GAN). To evaluate the proposed method, we propose a novel evaluation schema for generative and synthetic approaches based on radiomic features. For the evaluation purpose, we consider 510 pair-slices from 102 patients to train two different GAN-based architectures Cycle GAN and Dual Cycle-Consistent Adversarial network (DC2Anet). The results indicate that generative methods can produce similar results to the original sequence without significant change in the radiometric feature. Therefore, such a method can assist clinics to make decisions based on the generated image when different sequences are not available or there is not enough time to re-perform the MRI scans. [ABSTRACT FROM AUTHOR]

Simple Summary: Accurately grading gliomas, which are the most common and aggressive malignant brain tumors in adults, poses a significant challenge for radiologists. This study explores the application of Deep Learning techniques in assisting tumor grading using Magnetic Resonance Images (MRIs). By analyzing a glioma database sourced from multiple public datasets and comparing different settings, the aim of this study is to develop a robust and reliable grading system. The study demonstrates that by focusing on the tumor region of interest and augmenting the available data, there is a significant improvement in both the accuracy and confidence of tumor grade classifications. While successful in differentiating low-grade gliomas from high-grade gliomas, the accurate classification of grades 2, 3, and 4 remains challenging. The research findings have significant implications for advancing the development of a non-invasive, robust, and trustworthy data-driven system to support clinicians in the diagnosis and therapy planning of glioma patients. Glioma is the most common type of tumor in humans originating in the brain. According to the World Health Organization, gliomas can be graded on a four-stage scale, ranging from the most benign to the most malignant. The grading of these tumors from image information is a far from trivial task for radiologists and one in which they could be assisted by machine-learning-based decision support. However, the machine learning analytical pipeline is also fraught with perils stemming from different sources, such as inadvertent data leakage, adequacy of 2D image sampling, or classifier assessment biases. In this paper, we analyze a glioma database sourced from multiple datasets using a simple classifier, aiming to obtain a reliable tumor grading and, on the way, we provide a few guidelines to ensure such reliability. Our results reveal that by focusing on the tumor region of interest and using data augmentation techniques we significantly enhanced the accuracy and confidence in tumor classifications. Evaluation on an independent test set resulted in an AUC-ROC of 0.932 in the discrimination of low-grade gliomas from high-grade gliomas, and an AUC-ROC of 0.893 in the classification of grades 2, 3, and 4. The study also highlights the importance of providing, beyond generic classification performance, measures of how reliable and trustworthy the model's output is, thus assessing the model's certainty and robustness. [ABSTRACT FROM AUTHOR]

Colon and rectal cancers are the most common kinds of cancer globally. Colon cancer is more prevalent in men than in women. Early detection increases the likelihood of survival, and treatment significantly increases the likelihood of eradicating the disease. The Surveillance, Epidemiology, and End Results (SEER) programme is an excellent source of domestic cancer statistics. SEER includes nearly 30% of the United States population, covering various races and geographic locations. The data are made public via the SEER website when a SEER limited-use data agreement form is submitted and approved. We investigate data from the SEER programme, specifically colon cancer statistics, in this study. Our objective is to create reliable colon cancer survival and conditional survival prediction algorithms. In this study, we have presented an overview of cancer diagnosis methods and the treatments used to cure cancer. This paper presents an analysis of prediction performance of multiple deep learning approaches. The performance of multiple deep learning models is thoroughly examined to discover which algorithm surpasses the others, followed by an investigation of the network's prediction accuracy. The simulation outcomes indicate that automated prediction models can predict colon cancer patient survival. Deep autoencoders displayed the best performance outcomes attaining 97% accuracy and 95% area under curve-receiver operating characteristic (AUC-ROC). [ABSTRACT FROM AUTHOR]

Breast cancer (BC) is the leading cause of death among women worldwide. It affects in general women older than 40 years old. Medical images analysis is one of the most promising research areas since it provides facilities for diagnosis and decision-making of several diseases such as BC. This paper conducts a Structured Literature Review (SLR) of the use of Machine Learning (ML) and Image Processing (IP) techniques to deal with BC imaging. A set of 530 papers published between 2000 and August 2019 were selected and analyzed according to ten criteria: year and publication channel, empirical type, research type, medical task, machine learning techniques, datasets used, validation methods, performance measures and image processing techniques which include image pre-processing, segmentation, feature extraction and feature selection. Results showed that diagnosis was the most used medical task and that Deep Learning techniques (DL) were largely used to perform classification. Furthermore, we found out that classification was the most ML objective investigated followed by prediction and clustering. Most of the selected studies used Mammograms as imaging modalities rather than Ultrasound or Magnetic Resonance Imaging with the use of public or private datasets with MIAS as the most frequently investigated public dataset. As for image processing techniques, the majority of the selected studies pre-process their input images by reducing the noise and normalizing the colors, and some of them use segmentation to extract the region of interest with the thresholding method. For feature extraction, we note that researchers extracted the relevant features using classical feature extraction techniques (e.g. Texture features, Shape features, etc.) or DL techniques (e. g. VGG16, VGG19, ResNet, etc.), and finally few papers used feature selection techniques in particular the filter methods. [ABSTRACT FROM AUTHOR]

Compressed Sensing Magnetic Resonance Imaging (CS-MRI) could be considered a challenged task since it could be designed as an efficient technique for fast MRI acquisition which could be highly beneficial for several clinical routines. In fact, it could grant better scan quality by reducing motion artifacts amount as well as the contrast washout effect. It offers also the possibility to reduce the exploration cost and the patient's anxiety. Recently, Deep Learning Neuronal Network (DL) has been suggested in order to reconstruct MRI scans with conserving the structural details and improving parallel imaging-based fast MRI. In this paper, we propose Deep Convolutional Encoder-Decoder architecture for CS-MRI reconstruction. Such architecture bridges the gap between the non-learning techniques, using data from only one image, and approaches using large training data. The proposed approach is based on autoencoder architecture divided into two parts: an encoder and a decoder. The encoder as well as the decoder has essentially three convolutional blocks. The proposed architecture has been evaluated through two databases: Hammersmith dataset (for the normal scans) and MICCAI 2018 (for pathological MRI). Moreover, we extend our model to cope with noisy pathological MRI scans. The normalized mean square error (NMSE), the peak-to-noise ratio (PSNR), and the structural similarity index (SSIM) have been adopted as evaluation metrics in order to evaluate the proposed architecture performance and to make a comparative study with the state-of-the-art reconstruction algorithms. The higher PSNR and SSIM values as well as the lowest NMSE values could attest that the proposed architecture offers better reconstruction and preserves textural image details. Furthermore, the running time is about 0.8 s, which is suitable for real-time processing. Such results could encourage the neurologist to adopt it in their clinical routines. Graphical abstract. [ABSTRACT FROM AUTHOR]

Diffusion tensor imaging (DTI) is a new imaging method that can be used to non-invasively measure the diffusion coefficient of water molecules in biological tissue structures in recent years. Since the DTI data is a tensor space, its segmentation is different from ordinary MRI images. Based on the existing deep learning model, an improved image semantic segmentation method based on super-pixels and conditional random field is proposed. Firstly, this paper uses the existing feature extraction model based on deep learning to obtain rough semantic segmentation results, including high-level semantic information of the image but lacking details of the image. In addition, the super-pixel segmentation algorithm is implemented to obtain super-pixels that carries more low-level information. Secondly, due to the lack of image details in rough segmentation results, the segmentation of the edge of the image is inaccurate. In this paper, a boundary optimization algorithm is proposed to optimize the edge segmentation accuracy of the rough results. Finally, the use of super-pixels for local boundary optimization can improve the segmentation accuracy. Experiments results show that this segment is a practical and effective method. [ABSTRACT FROM AUTHOR]

Abstract: Objective: A self-organizing map (SOM) is a competitive artificial neural network with unsupervised learning. To increase the SOM learning effect, a fuzzy-soft learning vector quantization (FSLVQ) algorithm has been proposed in the literature, using fuzzy functions to approximate lateral neural interaction of the SOM. However, the computational performance of FSLVQ is still not good enough, especially for large data sets. In this paper, we propose a suppressed FSLVQ (S-FSLVQ) using suppression with a parameter learning schema. We then apply the S-FSLVQ to MRI segmentation and compare it with several existing methods. Methods and materials: The proposed S-FSLVQ algorithm and some existing methods, such as FSLVQ, generalized LVQ, revised generalized LVQ and alternative LVQ, are compared using numerical data and MRI images. The numerical data are generated by a mixture of normal distributions. The MRI data sets are from a 2-year-old female patient who was diagnosed with retinoblastoma of her left eye, a congenital malignant neoplasm of the retina with frequent metastasis beyond the lacrimal cribrosa. To evaluate the performance of these algorithms, two criteria for accuracy and computational efficiency are used. Results: Comparing S-FSLVQ with FSLVQ, generalized LVQ, revised generalized LVQ and alternative LVQ, the numerical results indicate that the S-FSLVQ algorithm is better than the other algorithms in accuracy and computational efficiency. Moreover, the proposed S-FSLVQ can reduce the computation time and increase accuracy compared to existing methods in segmenting these ophthalmological MRIs. Conclusions: The proposed S-FSLVQ is a good competitive learning algorithm that is very suitable for segmenting the ophthalmological MRI data sets. Therefore, the S-FSLVQ algorithm is highly recommended for use in MRI segmentation as an aid for supportive diagnoses. [Copyright &y& Elsevier]

Cholangiocarcinoma, cancer of the bile ducts, is often diagnosed via magnetic resonance cholangiopancreatography (MRCP). Due to low resolution, noise and difficulty is actually seeing the tumor in the images, especially by examining only a single image, there has been very little development of automated systems for cholangiocarcinoma diagnosis. This paper presents a computer-aided diagnosis (CAD) system for the automated preliminary detection of the tumor using a single MRCP image. The multi-stage system employs algorithms and techniques that correspond to the radiological diagnosis characteristics employed by doctors. A popular artificial neural network, the multi-layer perceptron (MLP), is used for decision making to differentiate images with cholangiocarcinoma from those without. The test results achieved was 94% when differentiating only healthy and tumor images, and 88% in a robust multi-disease test where the system had to identify the tumor images from a large set of images containing common biliary diseases. [ABSTRACT FROM AUTHOR]

Existing brain region segmentation algorithms based on deep convolutional neural networks (CNN) are inefficient for object boundary segmentation. In order to enhance the segmentation accuracy of brain tissue, this paper proposed an object region segmentation algorithm that combines pixel-level information and semantic information. Firstly, we extract semantic information by CNN with the attention module and get the coarse segmentation results through a specific pixel-level classifier. Then, we exploit conditional random fields to model the relationship between the underlying pixels so as to get local features. Finally, the semantic information and the local pixel-level information are respectively used as the unary potential and the binary potential of the Gibbs distribution, and the combination of both can obtain the fine region segmentation algorithm based on the fusion of pixel-level information and the semantic information. A large number of qualitative and quantitative test results show that our proposed algorithm has higher precision than the existing state-of-the-art deep feature models, which can better solve the problem of rough edge segmentation and produce good 3D visualization effect. [ABSTRACT FROM AUTHOR]

Computer aided diagnosis using artificial intelligent techniques made tremendous improvement in medical applications especially for easy detection of tumor area, tumor type and grades. This paper presents automatic glioma tumor grade identification from magnetic resonant images using Wndchrm tool based classifier (Weighted Neighbour Distance using Compound Heirarchy of Algorithms Representing Morphology) and VGG-19 deep convolutional neural network (DNN). For experimentation, DICOM images are collected from reputed government hospital and the proposed intelligent system categorized the tumor into four grades such as low grade glioma, oligodendroglioma, anaplastic glioma and glioblastoma multiform. After preprocessing, features are extracted, optimized and then classified using Windchrm tool where the most significant features are selected on the basis of Fisher score. In the case of DNN classifier, data augmentation is also performed before applying the images into the deep learning network. The performance of the classifiers are analysed with various measures such as accuracy, precision, sensitivity, specificity and F1-score. The results showed reasonably good performance with a maximum classification accuracy of 92.86% for the Wndchrm classifier and 98.25% for VGG-19 DNN classifier. The results are also compared with similar recent works and the proposed system is found to have better performance. [ABSTRACT FROM AUTHOR]