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This paper reviews quantitative biostratigraphic data from 101 petroleum exploration wells from the Malay, Sarawak and Sabah basins, and places the stratigraphy of each area into a precise chronostratigraphic framework comprising 41 transgressive-regressive depositional packages which are fully defined here. Each package is 'fingerprinted' by foraminiferal, nannofossil and palynological index fossils, and then tied to the global pattern of glacio-eustatic sea level and climate changes based on the global δ18O and δ13C datasets used to calibrate the geological timescale. The result is a tightly constrained chronostratigraphic framework that is applicable from deep to shallow water and is of high accuracy. It is concluded that there is a sedimentation 'pulsebeat' across Southeast Asia, independent of local and regional tectonics, driven by patterns of global climate change. For the Oligocene and Miocene, Antarctic glaciation is the key driver, whereas the Pliocene cycles are mainly driven by the expansion and contraction of Northern Hemisphere glaciers. The new chronostratigraphic framework allows unconformities across Malaysia to be better characterised, and the different classification schemes of seismic "Groups" in Malay and Penyu basins, "Cycles" in offshore Sarawak and "Stages" in offshore western Sabah to be correlated. Also, with a clear understanding of the effect of fluctuating sea levels on the stratigraphy of the region, it is easier to make firm judgments regarding the effect of tectonics. The study also characterises systems tracts from shelf to basin floor using biostatigraphic assemblages, which should help in ground-truthing the architecture of depositional sequences in the region based on seismic. The new framework is proposed as an alternative to the outdated TB scheme of Haq et al. (1988) , widely used to interpret depositional cycles across Sarawak and Sabah. Image 1 • 101 Malaysian exploration wells were studied for Sequence Biostratigraphy. • 41 depositional cycles have been defined from the mid-Oligocene to Pliocene. • Ages are 'fingerprinted' using age-restricted foraminifera, nannofossils and pollen. • Cycles were driven by Antarctic, followed by Arctic ice volume changes. • The study identifies major issues with the 'Haq' and other sea level curves. [ABSTRACT FROM AUTHOR]