1. Repeat-Free Codes.
- Author
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Elishco, Ohad, Gabrys, Ryan, Yaakobi, Eitan, and Medard, Muriel
- Subjects
- *
ALGORITHMS , *ERROR-correcting codes , *DNA sequencing , *INFORMATION theory , *SHIFT registers - Abstract
In this paper we consider the problem of encoding data into repeat-free sequences in which sequences are imposed to contain any k-tuple at most once (for predefined k). First, the capacity of the repeat-free constraint are calculated. Then, an efficient algorithm, which uses two bits of redundancy, is presented to encode length-n sequences for k = 2 + 2 log (n). This algorithm is then improved to support any value of k of the form k = a log (n), for 1 < a, while its redundancy is o(n). We also calculate the capacity of repeat-free sequences when combined with local constraints which are given by a constrained system, and the capacity of multi-dimensional repeat-free codes. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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