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The mandible size variability including sexual size dimorphism (SSD) of the cave lion (Panthera spelaea) in the Pleistocene of Northern Eurasia time has been studied basing on the univariate and multivariate statistical analyses of 76 specimens from 43 localities. It has been confirmed that SSD in adult P. spelaea, as well as in extant P. leo, is the dominant form of group variability of mandible and, to somewhat lesser extent, of variability of cheek teeth. The lowest degree of SSD has been found in a relatively small Beringian subspecies, P. spelaea vereshchagini. The geographical variability of the cave lion from Western to Eastern Eurasia was not a cline at least in the Late Pleistocene. Our results confirm a decrease in overall mandible size from the Middle Pleistocene to the Late Pleistocene over a large part of the species' range. We speculate that evolutionary changes in mandible size, lower canines or cheek teeth may have proceeded at different rates, allometry and probable heterochrony. Our results have added a new evidence to support the subspecies status of the Beringian lion (P. spelaea vereshchagini), but they are insufficient for other decisions on cave lion taxonomy at the subspecies level. [ABSTRACT FROM AUTHOR]

Extinct cave bears inhabited a large part of Eurasia in a wide diversity of habitats during the Pleistocene. This study investigates via tooth wear analysis the feeding habits of 66 individuals belonging to three genetically different species located in the Urals and eastern Europe: Ursus rossicus from Kizel cave, U. kanivetz from Secrets cave, and U. ingressus from Shiriaevo 1 cave. For the microwear analysis, the three species were compared with a reference collection of extant ursids. The dietary space of U. kanivetz does not match any of the extant species' spaces. U. rossicus and U. ingressus tended towards some of the extant species' measurements without any overlapping. For all three sites, the same microwear pattern was identified for all age groups (juvenile, prime, and old adult), meaning no differences related to ontogeny were found. The extinct species presented a larger number of coarse scratches compared to extant species, pointing to a preference for abrasive food items like dry grass or shrubs typical of the mammoth steppe biome during the cold season. These results indicate a niche partitioning between U. rossicus and U. kanivetz that co-existed in the same area, and in this way they avoiding competition. [ABSTRACT FROM AUTHOR]

Morphometric and morphotypic variability of the cave bear lower incisors from two different geographic regions (Caucasus and Urals), different stratigraphic periods (Middle and Late Pleistocene), and bearing different mitochondrial haplogroups (kudarensis (Baryshnikov, 1985) and ingressus Rabeder, Hofreiter & Withalm, 2004) was studied. Urals Ursus kanivetz Vereshchagin, 1973 is clearly distinguished from Caucasian U. kudarensis by morphology of the upper and lower incisors. The Urals cave bear exhibits more derived features compared to the Caucasian cave bears. Ursus kanivetz exhibits the largest average size of the lower incisors. The lower incisors of U. kanivetz are clearly distinct from those in U. kudarensis. Also, U. kudarensis specimens display a clear separation from all other groups of cave bears. Morphology of the incisors of the cave bears is clearly different from that of Early Pleistocene U. etruscus G. Cuvier, 1823, as well as from that of recent U. arctos L., 1758 (Rabeder, 1999) and U. maritimus Phipps, 1774. Our results suggest that the incisors of the cave bears are similar to each other and demonstrate a hypocarnivorous adaptation as a major evolution trend in the lineage of Spelearctos group. These adaptation features were perhaps developed in parallel in different lineages of the cave bears (U. spelaeus Rosenmüller, 1794 and U. kanivetz on the one hand and U. kudarensis on the other hand) in the Late Pleistocene. [ABSTRACT FROM AUTHOR]

The variability of lower 6776 cheek teeth of spelaeoid (Ursus spelaeus, U. kanivetz, U. deningeri, U. kudarensis, U. savini and U. rossicus) and arctoid lineages (extant and extinct U. arctos) recovered from 176 palaeontological localities was analysed by methods of univariate and multivariate statistics. For comparison, teeth of U. minimus and U. etruscus species, which are ancestral taxa for cave bears and brown bear, were studied. The performed analyses indicate great variability of tooth crown in lower cheek teeth; no distinct general trend was identified in the changes, except for an increase in p4 roundness and in m3 size from U. minimus to big cave bears. Centroids of U. minimus and U. etruscus are at a great distance from those of cave bears; U. arctos occupies an intermediate position between the two groups. Molar characteristics in general are close in U. savini and U. rossicus. The bear species are differentiated in the morphospaces by morphometric variations in the lower cheek teeth but less markedly than in the morphospaces of the upper cheek teeth. A test of the inhibitory developmental cascade model showed that a linear relationship between lower molar dimensions became clear only after premolar p4 was included in the model. Evolutionary trends were found in the tooth changes with time (differently expressed in individual species and in different teeth) depending on environments, in particular on the elevation of the locality above the sea level. The allometric pattern differentiation does not always coincide with phylogenetic relationships between taxa, being most often revealed at the subspecies level. There is a dominant covariance between the upper and lower rows of teeth in accordance with the occlusion scheme. It may vary in manifestation depending on the particular species. [ABSTRACT FROM AUTHOR]

Univariate and multivariate statistics were applied to analyse the morphometrical variability of 4920 upper cheek teeth (P4, M1 and M2) of cave bears from 123 geographical sites (180 samples) of different Pliocene – Pleistocene ages. The analysed specimens included those belonging to the big cave bears Ursus kudarensis, U. deningeri, U. spelaeus (three subspecies) and U. kanivetz (including U. ingressus), as well as the small cave bear U. rossicus. The information‐theoretical parameters (Shannon entropy and orderliness (Von Foerster, 1960: On self‐organizing systems and their environments. In Self‐Organizing Systems, 31–50. Pergamon Press, London) were used to estimate tooth diversity in different teeth, different taxa and in selected local chrono‐populations. Multivariate allometry coefficients (Klingenberg, 1996: Multivariate allometry. In Advances in Morphometrics, 23‐49. Plenum Press, New York) were used to describe the relationships of different 'parts' of a tooth and to compare allometric patterns amongst species or selected local samples. A multivariate analysis showed a significant overlap of the size/shape parameter ranges in deningeroid and spelaeoid bears within morphological spaces. Within the cave bear lineage, the Deninger's bear has the greatest morphological diversity index (entropy) of all the teeth overall, and the lowest diversity is observed in the final taxon of this lineage – U. kanivetz (=ingressus). The P4 and M2 diversity showed multidirectional correlations with elevation above sea level amongst several 'local' populations of Late Pleistocene cave bears. The morphological disparities between the studied taxa are in close agreement with the distances in the available schemes of genetic differentiation based on ancient mitochondrial DNA. The split of U. kudarensis and U. deningeri has a good bootstrap support, which corresponds to the hypothesis about their parallel evolution. The small cave bear U. rossicus is placed between U. arctos and U. deningeri. The phylogenetic signal is more pronounced in the variability of teeth in comparison with other skeletal remains of cave bears (cranium, mandible, or metapodial bones). [ABSTRACT FROM AUTHOR]

Extinct hyenas of the genus Crocuta were typical representatives of the Late Pleistocene mammoth fauna of Eurasia. The geographical distribution of these animals was vast, stretching from the British Isles to the Pacific coast. In this paper, we studied the tooth microwear of Crocuta spelaea from the Prolom 2 grotto in Crimea and the Bukhtarminskaya Cave in eastern Kazakhstan, and C. ultima ussurica from the Geographical Society Cave in the Russian Far East, to provide a comparative analysis of the feeding habits of these two species and to test for ecological differences. We also tested for ontogenic differences in diet through a comparison of juvenile and adult individuals. Our findings show that the microwear patterns of these Late Pleistocene hyenas resemble those of extant spotted hyenas (C. crocuta) but differ from those of extant stripped (Hyaena hyaena) and brown hyenas (Parahyaena brunnea). However, we noted that the number of scratches in the C. ultima ussurica specimens exceeded the variability observed in extant spotted hyenas and instead more closely resembled the microwear signal of typical predators (e.g., lions). Adults and juveniles exhibited similar microwear patterns in terms of the quantity of pits and scratches; however, most juveniles lacked cross scratches, as also observed in most individuals from Prolom 2. This pattern could be related to a higher proportion of meat in the diet of juveniles, without excluding the consumption of bones. Our tooth microwear analysis improves the knowledge of the paleobiology of extinct representatives of the genus Crocuta. • First tooth enamel microwear study to evaluate the paleodiet of the cave hyena • Similar diets in the three populations of hyenas from Eastern Europe and Eastern Asia • Overall similarity to the diet known for the extant spotted hyena • Ontogenic differences between the adults and the juveniles • Microwear patterns show relevant inter-specific and intra-specific differences. [ABSTRACT FROM AUTHOR]

Abstract: Morphological and molecular data suggest the existence of several taxa of cave bears, which were found to belong to three major mitochondrial haplogroups: kudarensis (kudarensis), spelaeus (ladinicus, eremus, spelaeus), and ingressus (uralensis, ingressus, kanivetz). An analysis of craniometrical variability was carried out based on 20 measurements of 279 skulls from 40 European, Ural, and Caucasian localities, in order to investigate morphological similarity/dissimilarity of these taxa in a multivariate approach. The craniometrical analysis divides cave bears into two groups: small cave bears and large cave bears. The group of small bears consists of rossicus/uralensis and ladinicus. In some skull proportions, these taxa display intermediate position between brown and cave bears, i.e. presumably possessing archaic characters of their common ancestor. The group of large bears includes taxa with more specialized skulls. An early radiation within this group is demonstrated by kudarensis which probably ranged across Asia, and deningeri which occupied Europe east to the Ural Mountains. In its craniometrical characters, kanivetz from the Late Pleistocene of the Urals resembles deningeri. Other taxa of large cave bears (spelaeus, ingressus and eremus) reveal further evolution of cranial characters, being similar in the skull proportions. The level of difference between spelaeus and ingressus does not exceed that between subspecies of the recent brown bear, such as Ursus arctos beringianus and U. a. piscator. The examined isolated population of large cave bears from Volga River region (Zhiguli Hills) is similar to ingressus. Thus, based on the craniometrical data, the following species of cave bear are recognized: Ursus kudarensis (with the subspecies U. k. praekudarensis and U. k. kudarensis), U. deningeri (several subspecies), U. rossicus (with subspecies U. r. rossicus and U. r. uralensis), U. ladinicus, U. spelaeus (with subspecies U. s. spelaeus, U. s. eremus, U. s. ingressus, and, provisionally, U. s. kanivetz,). [Copyright &y& Elsevier]

Abstract: New taxonomic study of the “old collection” of Carnivora from Petralona Cave, associated to the well-known hominid skull, housed in the Geology School of the Thessaloniki Aristotle University since 1960, revealed 11 species (Canis arnensis, Lycaon lycaonoides, Vulpes praeglacialis, Ursus deningeri, U. spelaeus, U. arctos, Pliocrocuta perrieri, Pachycrocuta brevirostris, Crocuta crocuta, Panthera leo spelaea, and Felis silvestris), which are described in detail. The species composition is typical of the eastern part of the European Mediterranean and may be divided into three biostratigraphic assemblages: early Middle Pleistocene, late Middle Pleistocene and Late Pleistocene. [ABSTRACT FROM AUTHOR]

Cementum and dentine increment analysis was used for the first time to study the remains of cave bears from European Russia, the Urals and the Caucasus. This study analysed 12 canines belonging to 12 different individuals (five males and seven females) from genetically different lineages of cave bears. The increment analysis showed that all studied cave bears belong to the categories adults and old animals (from 10 to 32.5 years). The enamel crowns of all 12 canines were broken and/or had wear facets. Seven canines studied were severely broken (more than one‐third of a canine crown missing). Significant damage to dental crowns may indicate old age, conflict between males and/or high food abrasion. The absence of significant differences in the extent of canine breakage between the youngest and the oldest animals, as well as between the males and the females, may indicate a significant role of food abrasiveness in the process of the grinding of canines. Until now, the question of whether these animals visited caves year‐round or stayed there mainly for overwintering remained open. The increment analysis showed different seasons of the bears' death. Six individuals died in the warm season and four individuals died in the cold season. In all of the studied caves (excluding Medvezhiya Cave) the animals died in the warm season as well as in the cold season. All of the studied females perished either during the cold season or at the very beginning of the warm season. On the contrary, almost all of the examined males perished in the warm season. Thus, the cave bears visited the caves year‐round. This study raises new questions in the study of the ecology of cave bears from different parts of their range. [ABSTRACT FROM AUTHOR]

During the past several decades, the paleoecology of the Mammuthus-Coelodonta Faunal Complex in the Palearctic has been thoroughly explored, especially using stable isotope analysis. Numerous studies have documented high ecological plasticity and regional heterogeneities for this fauna. However, very limited attention has focused on Northeast Asia, at the southeastern edge of the distribution of the mammoth steppe biome. In the present study, we undertook radiocarbon dating, zooarchaeology by mass spectrometry (ZooMS), and stable isotope analysis on the fossil faunas from Yanjiagang Paleolithic site, Northeast (NE) China, and from the Geographical Society Cave in the nearby Russian Far East, to explore the paleoecology of this fauna in this middle-latitude region. Isotopic (δ 13C, δ 15N) data from these two sites suggested that the woolly mammoth (Mammuthus primigenius) was a grazer feeding on grasses/sedges, while the woolly rhinoceros (Coelodonta antiquitatis) and steppe bison (Bison priscus) utilized a wider range of food resources. All megaherbivores exhibited some ecological plasticity. Meanwhile, the mammal remains from Geographical Society Cave prevalently exhibited lower δ 15N values than those from China, indicating variable environments and vegetation in Northeast Asia during MIS 3. Interestingly, through reevaluating the diachronic mammal distribution and ecology based on direct radiocarbon dating and ZooMS, we report the credible presence of Bubalus , typically interpreted as a mild climate faunal element in the Pleistocene, within the Mammuthus-Coelodonta Faunal Complex in Yanjiagang. This emphasizes the unique scenario of this biome in Northeast Asia, where the fauna exhibited sensitivity to synergic effects of climatic oscillations and local geographic traits. After comparing isotopic data of mammoth from different subregions of Asia, we found that NE China displayed both highest δ 13C and δ 15N values, possibly related to the higher temperature compared to the Arctic regions. This study reveals the characteristics and complexity at the southeastern limit of the range of the mammoth steppe biome and urges more systematic studies within and outside this region. [ABSTRACT FROM AUTHOR]

Museum collections are essential for reconstructing and understanding past biodiversity. Many museum specimens are, however, challenging to identify. Museum samples may be incomplete, have an unusual morphology, or represent juvenile individuals, all of which complicate accurate identification. In some cases, inaccurate identification can lead to false biogeographic reconstructions with cascading impacts on paleontological and paleoecological research. Here, we analyzed an unusual Equid mandible found in the Far North of the Taymyr peninsula that was identified morphologically as Equus hemionus, an ancestor of present‐day Asiatic wild asses. If correct, this identification represents the only finding of a putative Late Pleistocene hemione in the Arctic region, and is therefore critical to understanding wild ass evolution and paleoecology. To confirm the accuracy of this specimen's taxonomic assignment, we used ancient DNA and mitochondrial hybridization capture to identify and place this specimen in the larger equid phylogeny. We find that the specimen is actually a member of E. caballus, the ancestor of domestic horses. Our study demonstrates the utility of ancient DNA to validate morphological identification, in particular of incomplete, otherwise problematic, or taxonomically unusual museum specimens. [ABSTRACT FROM AUTHOR]

The dietary changes of early cave bear populations from the Middle to Late Pleistocene are poorly understood. In this study, we analysed 60 m1 through dental microwear analysis of three diachronic Middle (Ursus praekudarensis and U. praekudarensis / kudarensis) to Late Pleistocene (U. kudarensis) populations inhabiting the Kudaro 1 and Kudaro 3 caves in the Southern Caucasus. The diet of all populations was inferred to be omnivorous, although it changed over time, adapting to the climatic and ecological conditions of the period. Bones from U. praekudarensis / kudarensis populations accumulated throughout the year; thus, microwear suggests an average annual diet dominated by plant resources. The widespread presence of hypercoarse scratches in U. kudarensis and U. praekudarensis populations suggests animal protein intake during the hyperphagia. The presence of omnivorous guild competitors and harsh conditions in a high-altitude environment could have driven the Caucasian cave bears to consume animal protein as a fallback diet during their predormancy period. Furthermore, the cave bears' capacity for dietary flexibility through time highlights the ability of cave bears to withstand climatic changes, while competition with other omnivorous species could have driven their dietary niche during their hyperphagia period towards animal protein consumption throughout the Middle to Late Pleistocene. • First diachronic dental microwear study of the cave bear linage • High capacity to adapt to different ecological conditions by cave bears • Evidence of occasional animal consumption by cave bears • Competition for resources with other omnivores shaped cave bear diet through time [ABSTRACT FROM AUTHOR]

Sequence analyses of the complete brown bear, Ursus arctos, mitochondrial DNA ( mtDNA) genome have detected scattered single nucleotide polymorphisms ( SNPs) that define distinct mtDNA haplogroups in phylogeographical studies. The degraded DNA in historical samples, such as stuffed or excavated specimens, however, is often not suitable for sequence analyses. To address this problem, we developed an amplified product length polymorphism ( APLP) analysis for mtDNA-haplogrouping U. arctos specimens by detecting haplogroup-specific SNPs. We verified the validity and utility of this method by analysing up to 170-year-old skin samples from U. arctos specimens collected widely across continental Eurasia. We detected some of the same haplogroups as those occurring in eastern Hokkaido ( Japan) and eastern Alaska in continental Eurasia (the Altai and the Caucasus). Our results show that U. arctos in eastern Hokkaido and eastern Alaska descended from a common ancestor in continental Eurasia, and suggest that U. arctos occupied several refugia in southern Asia during the Last Glacial Maximum. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 111, 627-635. [ABSTRACT FROM AUTHOR]

Abstract: For a long time, “spelaeoid” (cave-bear-like) bears, Ursus (Spelearctos) spp., were believed to be almost purely European animals. Their geographic range has recently been extended to the east, in southern Siberia, Transbaikalia, Kirghizia, Mongolia and Korea. Two unexpected new findings, presented here in detail, significantly change existing views on the distribution of cave bears; both were found in North-Eastern Siberia, far beyond the Arctic Circle, more than 1500 km to the north-east of the previously accepted range. One of the fossils is a mandible, found near the town of Cherskiy at 68.73°N, 161.38°E. The analysis of local geology and accompanying mammal fossils suggests that it comes from the Olyorian Fauna (Early to early Middle Pleistocene). Morphologically, the Cherskiy mandible is closest to Ursus savini, a small middle Pleistocene cave bear from the British Cromer Forest-bed Formation, but differs in having a slightly more advanced dentition, and thus it is described as a new subspecies Ursus savini nordostensis. Another newly recognized fossil of the “spelaeoid” bear is an astragalus found at the Oskhordokh site at 67.54°N, 135.67°E, on a large gravel bar on the right bank of the Adycha River. This specimen is attributed to Ursus cf. deningeri. The paper also presents an interesting example of the interaction between classical and “molecular” palaeontology. The new finds significantly change existing ideas on the ecology and evolution of cave bears, some of the most remarkable members of the extinct Pleistocene megafauna. [Copyright &y& Elsevier]

Muskox Ovibos moschatus is a Pleistocene relic, which has survived only in North America and Greenland. During the Pleistocene, it was widely distributed in Eurasia and North America. To evaluate its morphological variability through time and space, we conducted an extensive morphometric study of 217 Praeovibos and Ovibos skull remains. The analyses showed that the skulls grew progressively wider from Praeovibos sp. to the Pleistocene O. moschatus, while from the Pleistocene to the recent O. moschatus, the facial regions of the skull turned narrower and shorter. We also noticed significant geographic differences between the various Pleistocene Ovibos crania. Siberian skulls were usually larger than those from Western and Central Europe. Eastern European muskoxen also exceeded in size those from the other regions of Europe. The large size of Late Pleistocene muskoxen from regions located in more continental climatic regimes was probably associated with the presence of more suitable food resources in steppe-tundra settings. Consistently, radiocarbon-dated records of this species are more numerous in colder periods, when the steppe-tundra was widely spread, and less abundant in warmer periods. [ABSTRACT FROM AUTHOR]

Background: Sex-biased dispersal is widespread among mammals, including the brown bear (Ursus arctos). Previous phylogeographic studies of the brown bear based on maternally inherited mitochondrial DNA have shown intraspecific genetic structuring around the northern hemisphere. The brown bears on Hokkaido Island, northern Japan, comprise three distinct maternal lineages that presumably immigrated to the island from the continent in three different periods. Here, we investigate the paternal genetic structure across northeastern Asia and assess the connectivity among and within intraspecific populations in terms of male-mediated gene flow. Results: We analyzed paternally inherited Y-chromosomal DNA sequence data and Y-linked microsatellite data of 124 brown bears from Hokkaido, the southern Kuril Islands (Kunashiri and Etorofu), Sakhalin, and continental Eurasia (Kamchatka Peninsula, Ural Mountains, European Russia, and Tibet). The Hokkaido brown bear population is paternally differentiated from, and lacked recent genetic connectivity with, the continental Eurasian and North American populations. We detected weak spatial genetic structuring of the paternal lineages on Hokkaido, which may have arisen through male-mediated gene flow among natal populations. In addition, our results suggest that the different dispersal patterns between male and female brown bears, combined with the founder effect and subsequent genetic drift, contributed to the makeup of the Etorofu Island population, in which the maternal and paternal lineages show different origins. Conclusions: Brown bears on Hokkaido and the adjacent southern Kuril Islands experienced different maternal and paternal evolutionary histories. Our results indicate that sex-biased dispersal has played a significant role in the evolutionary history of the brown bear in continental populations and in peripheral insular populations, such as on Hokkaido, the southern Kuril Islands, and Sakhalin. [ABSTRACT FROM AUTHOR]

Summary: Background: Polar bears (Ursus maritimus) are among those species most susceptible to the rapidly changing arctic climate, and their survival is of global concern. Despite this, little is known about polar bear species history. Future conservation strategies would significantly benefit from an understanding of basic evolutionary information, such as the timing and conditions of their initial divergence from brown bears (U. arctos) or their response to previous environmental change. Results: We used a spatially explicit phylogeographic model to estimate the dynamics of 242 brown bear and polar bear matrilines sampled throughout the last 120,000 years and across their present and past geographic ranges. Our results show that the present distribution of these matrilines was shaped by a combination of regional stability and rapid, long-distance dispersal from ice-age refugia. In addition, hybridization between polar bears and brown bears may have occurred multiple times throughout the Late Pleistocene. Conclusions: The reconstructed matrilineal history of brown and polar bears has two striking features. First, it is punctuated by dramatic and discrete climate-driven dispersal events. Second, opportunistic mating between these two species as their ranges overlapped has left a strong genetic imprint. In particular, a likely genetic exchange with extinct Irish brown bears forms the origin of the modern polar bear matriline. This suggests that interspecific hybridization not only may be more common than previously considered but may be a mechanism by which species deal with marginal habitats during periods of environmental deterioration. [ABSTRACT FROM AUTHOR]

Prior to the Holocene, the range of the saiga antelope ( Saiga tatarica) spanned from France to the Northwest Territories of Canada. Although its distribution subsequently contracted to the steppes of Central Asia, historical records indicate that it remained extremely abundant until the end of the Soviet Union, after which its populations were reduced by over 95%. We have analysed the mitochondrial control region sequence variation of 27 ancient and 38 modern specimens, to assay how the species' genetic diversity has changed since the Pleistocene. Phylogenetic analyses reveal the existence of two well-supported, and clearly distinct, clades of saiga. The first, spanning a time range from >49 500 C ybp to the present, comprises all the modern specimens and ancient samples from the Northern Urals, Middle Urals and Northeast Yakutia. The second clade is exclusive to the Northern Urals and includes samples dating from between 40 400 to 10 250 C ybp. Current genetic diversity is much lower than that present during the Pleistocene, an observation that data modelling using serial coalescent indicates cannot be explained by genetic drift in a population of constant size. Approximate Bayesian Computation analyses show the observed data is more compatible with a drastic population size reduction ( c. 66-77%) following either a demographic bottleneck in the course of the Holocene or late Pleistocene, or a geographic fragmentation (followed by local extinction of one subpopulation) at the Holocene/Pleistocene transition. [ABSTRACT FROM AUTHOR]

Lions were the most widespread carnivores in the late Pleistocene, ranging from southern Africa to the southern USA, but little is known about the evolutionary relationships among these Pleistocene populations or the dynamics that led to their extinction. Using ancient DNA techniques, we obtained mitochondrial sequences from 52 individuals sampled across the present and former range of lions. Phylogenetic analysis revealed three distinct clusters: (i) modern lions, Panthera leo; (ii) extinct Pleistocene cave lions, which formed a homogeneous population extending from Europe across Beringia (Siberia, Alaska and western Canada); and (iii) extinct American lions, which formed a separate population south of the Pleistocene ice sheets. The American lion appears to have become genetically isolated around 340 000 years ago, despite the apparent lack of significant barriers to gene flow with Beringian populations through much of the late Pleistocene. We found potential evidence of a severe population bottleneck in the cave lion during the previous interstadial, sometime after 48 000 years, adding to evidence from bison, mammoths, horses and brown bears that megafaunal populations underwent major genetic alterations throughout the last interstadial, potentially presaging the processes involved in the subsequent end-Pleistocene mass extinctions. [ABSTRACT FROM AUTHOR]

Over 60% of the modern distribution range of brown bears falls within Russia, yet palaeoecological data from the region remain scarce. Complete modern Russian brown bear mitogenomes are abundant in the published literature, yet examples of their ancient counterparts are absent. Similarly, there is only limited stable isotopic data of prehistoric brown bears from the region. We used ancient DNA and stable carbon (δ13C) and nitrogen (δ15N) isotopes retrieved from five Pleistocene Yakutian brown bears (one Middle Pleistocene and four Late Pleistocene), to elucidate the evolutionary history and palaeoecology of the species in the region. We were able to reconstruct the complete mitogenome of one of the Late Pleistocene specimens, but we were unable to assign it to any of the previously published brown bear mitogenome clades. A subsequent analysis of published mtDNA control region sequences, which included sequences of extinct clades from other geographic regions, assigned the ancient Yakutian bear to the extinct clade 3c; a clade previously identified from Late Quaternary specimens from Eastern Beringia and Northern Spain. Our analyses of stable isotopes showed relatively high δ15N values in the Pleistocene Yakutian brown bears, suggesting a more carnivorous diet than contemporary brown bears from Eastern Beringia. [ABSTRACT FROM AUTHOR]

Background: Resolving the historical biogeography of the leopard (Panthera pardus) is a complex issue, because patterns inferred from fossils and from molecular data lack congruence. Fossil evidence supports an African origin, and suggests that leopards were already present in Eurasia during the Early Pleistocene. Analysis of DNA sequences however, suggests a more recent, Middle Pleistocene shared ancestry of Asian and African leopards. These contrasting patterns led researchers to propose a two-stage hypothesis of leopard dispersal out of Africa: an initial Early Pleistocene colonisation of Asia and a subsequent replacement by a second colonisation wave during the Middle Pleistocene. The status of Late Pleistocene European leopards within this scenario is unclear: were these populations remnants of the first dispersal, or do the last surviving European leopards share more recent ancestry with their African counterparts? Results: In this study, we generate and analyse mitogenome sequences from historical samples that span the entire modern leopard distribution, as well as from Late Pleistocene remains. We find a deep bifurcation between African and Eurasian mitochondrial lineages (~ 710 Ka), with the European ancient samples as sister to all Asian lineages (~ 483 Ka). The modern and historical mainland Asian lineages share a relatively recent common ancestor (~ 122 Ka), and we find one Javan sample nested within these. Conclusions: The phylogenetic placement of the ancient European leopard as sister group to Asian leopards suggests that these populations originate from the same out-of-Africa dispersal which founded the Asian lineages. The coalescence time found for the mitochondrial lineages aligns well with the earliest undisputed fossils in Eurasia, and thus encourages a re-evaluation of the identification of the much older putative leopard fossils from the region. The relatively recent ancestry of all mainland Asian leopard lineages suggests that these populations underwent a severe population bottleneck during the Pleistocene. Finally, although only based on a single sample, the unexpected phylogenetic placement of the Javan leopard could be interpreted as evidence for exchange of mitochondrial lineages between Java and mainland Asia, calling for further investigation into the evolutionary history of this subspecies. [ABSTRACT FROM AUTHOR]

Summary Saber-toothed cats (Machairodontinae) are among the most widely recognized representatives of the now largely extinct Pleistocene megafauna. However, many aspects of their ecology, evolution, and extinction remain uncertain. Although ancient-DNA studies have led to huge advances in our knowledge of these aspects of many other megafauna species (e.g., mammoths and cave bears), relatively few ancient-DNA studies have focused on saber-toothed cats [ 1–3 ], and they have been restricted to short fragments of mitochondrial DNA. Here we investigate the evolutionary history of two lineages of saber-toothed cats ( Smilodon and Homotherium ) in relation to living carnivores and find that the Machairodontinae form a well-supported clade that is distinct from all living felids. We present partial mitochondrial genomes from one S. populator sample and three Homotherium sp. samples, including the only Late Pleistocene Homotherium sample from Eurasia [ 4 ]. We confirm the identification of the unique Late Pleistocene European fossil through ancient-DNA analyses, thus strengthening the evidence that Homotherium occurred in Europe over 200,000 years later than previously believed. This in turn forces a re-evaluation of its demography and extinction dynamics. Within the Machairodontinae, we find a deep divergence between Smilodon and Homotherium (∼18 million years) but limited diversity between the American and European Homotherium specimens. The genetic data support the hypothesis that all Late Pleistocene (or post-Villafrancian) Homotherium should be considered a single species, H. latidens , which was previously proposed based on morphological data [ 5, 6 ]. [ABSTRACT FROM AUTHOR]

Human colonization of the New World is generally believed to have entailed migrations from Siberia across the Bering isthmus. However, the limited archaeological record of these migrations means that details of the timing, cause and rate remain cryptic. Here, we have used a combination of ancient DNA, 14C dating, hydrogen and oxygen isotopes, and collagen sequencing to explore the colonization history of one of the few other large mammals to have successfully migrated into the Americas at this time: the North American elk (Cervus elaphus canadensis), also known as wapiti. We identify a long-term occupation of northeast Siberia, far beyond the species's current Old World distribution. Migration into North America occurred at the end of the last glaciation, while the northeast Siberian source population became extinct only within the last 500 years. This finding is congruent with a similar proposed delay in human colonization, inferred from modern human mitochondrial DNA, and suggestions that the Bering isthmus was not traversable during parts of the Late Pleistocene. Our data imply a fundamental constraint in crossing Beringia, placing limits on the age and mode of human settlement in the Americas, and further establish the utility of ancient DNA in palaeontological investigations of species histories. [ABSTRACT FROM AUTHOR]