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Background: Deer species play an important role in the enzootic cycles of several Anaplasma species. While in the Northern Hemisphere ticks of genus Ixodes are well recognized vectors of these intracellular bacteria, less is known regarding the biological cycles of Anaplasma spp. in South America. Methods: Using PCR protocols and Sanger sequencing, we assessed the presence of Anaplasma spp. in blood and ticks collected on a native deer species (Pudupuda) from southern Chile. Results: Based on phylogenetic analyses of the 16S rRNA, gltA and groEL genes and calculation of average sequence divergence for groEL, our results bring to light a novel genovariant of Anaplasmaphagocytophilum (named strain "Patagonia"). The strain represents a novel ecotype within the A. phagocytophilum species complex and was detected in both P.puda and their ticks. Using a larger matrix, denser taxon sampling and outgroup, our maximum-likelihood- and Bayesian-inferred phylogenies for groEL provide an accurate picture of the topology of A. phagocytophilum ecotypes and their evolutionary relationships. Conclusions: This is the first report of an ecotype of A. phagocytophilum in South America. Our results provide novel insight into the genetic diversity and ecology of this complex of bacterial lineages. Further studies should elucidate the enzootic cycle of A. phagocytophilum strain "Patagonia" and assess its pathogenic potential for pudues, domestic animals and humans in the region. [ABSTRACT FROM AUTHOR]

Cervids are important hosts for ticks and although they are refractory to some tick‐borne agents such as Borrelia, they do act as reservoirs for others such as Babesia. Babesia and Borrelia are commonly transmitted by Ixodes spp. associated with deer, and most of the knowledge on their biological cycles comes from northern latitudes of the globe. In this study, we performed genetic screenings to detect tick‐borne agents in blood and Ixodes stilesi ticks collected from an insular population of threatened pudu (Pudu puda), a pygmy deer species that inhabits temperate rainforests of southern South America. Inferred by phylogenetic analyses for 18S rRNA, COI and cytb genes, our results unveiled a novel genospecies of Babesia (Babesia sp. pudui) genetically related to Babesia odocoilei, a species that infects Odocoileus virginianus deer in North America. Although blood of the deer was negative for Borrelia infection, multilocus sequencing typing performed in one I. stilesi tick revealed the occurrence of a novel genetic variant of Borrelia chilensis, differing 0.93% and 0.18% in flaB and pepX genes with the type of strain for the species, respectively. Such a genetic divergence could be the result of thousands of years of isolation because of recent glaciation events that separated pudus and their tick populations at Chiloé Island approximately 437,000 years ago. The finding of a Babesia sp. has no precedents for wild and domestic ungulates in Chile and shows a novel piroplasmid that must be considered now on in rehabilitation centres and zoos that attend pudu deer. Further research is now necessary to confirm pathogenic roles. [ABSTRACT FROM AUTHOR]

Two species of grey foxes are recognized in the Southern Cone of America: Lycalopex griseus, and L. gymnocercus, which were traditionally separated by size and some cranial differences. Morphometric analyses of the skull showed that both species could be the same and that they show clinal variation, while DNA studies based on one mitochondrial marker suggested that they belong to different species. Our objective is to evaluate the systematic status of these foxes using three mitochondrial markers (cytochrome B, cytochrome oxidase I, and control region), and a large sample covering a wide geographic range. The results indicate that there are two clades, that are not sister taxa, a finding that is more congruent with the hypothesis of two species, but their geographic distribution is not coincident with the accepted distribution of L. griseus and L. gymnocercus. Consequently, the distribution of L. griseus is extended eastern including north and center of Argentina, towards the west and south of the Paraná, Paraguay and Río de la Plata rivers. On the other hand, the clade that probably represents L. gymnocercus is restricted to the east of those rivers, except for a few specimens collected in Santa Fe, close to the Paraná river. However, an analysis of a wider sample using nuclear DNA is needed to confirm the taxonomic identity of these species of grey foxes. [ABSTRACT FROM AUTHOR]