112 results on '"Davidson W"'
Search Results
2. High-Density Lipoprotein Subspecies in Health and Human Disease: Focus on Type 2 Diabetes.
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Davidson, W. Sean and Shah, Amy S.
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TYPE 2 diabetes , *HIGH density lipoproteins , *SUBSPECIES , *HYPERGLYCEMIA , *METABOLIC disorders , *INSULIN resistance - Abstract
Plasma cholesterol levels of high-density lipoproteins (HDL) have been associated with cardioprotection for decades. However, there is an evolving appreciation that this lipoprotein class is highly heterogeneous with regard to composition and functionality. With the advent of advanced lipid-testing techniques and methods that allow both the quantitation and recovery of individual particle populations, we are beginning to connect the functionality of HDL subspecies with chronic metabolic diseases. In this review, we examine type 2 diabetes (T2D) and explore our current understanding of how obesity, insulin resistance, and hyperglycemia affect, and may be affected by, HDL subspeciation. We discuss mechanistic aspects of how insulin resistance may alter lipoprotein profiles and how this may impact the ability of HDL to mitigate both atherosclerotic disease and diabetes itself. Finally, we call for more detailed studies examining the impact of T2D on specific HDL subspecies and their functions. If these particles can be isolated and their compositions and functions fully elucidated, it may become possible to manipulate the levels of these specific particles or target the protective functions to reduce the incidence of coronary heart disease. [ABSTRACT FROM AUTHOR]
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- 2019
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3. Airway inflammation, cough and athlete quality of life in elite female cross-country skiers: A longitudinal study.
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Kennedy, M. D., Davidson, W. J., Wong, L. E., Traves, S. L., Leigh, R., and Eves, N. D.
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COUGH , *CROSS-country skiing , *GRANULOCYTES , *INFLAMMATION , *LONGITUDINAL method , *QUALITY of life , *QUESTIONNAIRES , *REGRESSION analysis , *RESEARCH funding , *SPUTUM , *STATISTICS , *CYTOMETRY , *DATA analysis , *ELITE athletes , *REPEATED measures design , *DESCRIPTIVE statistics , *ONE-way analysis of variance - Abstract
The aim of this study was to investigate the effect of a season of cross-country training and racing on airway inflammation, cough symptoms, and athlete quality of life in female skiers. Eighteen elite female skiers performed sputum induction and completed the Leicester Cough Questionnaire ( LCQ) and the Recovery-Stress Questionnaire ( REST-Q) at three time points (T1 - May/ Jun, T2 - Oct/ Nov, T3 - Jan- Mar) during the year. No changes were observed between T1 and T2. However, an increase in sputum eosinophils and lymphocytes ( P < 0.05) and a significant change in all three domains of the LCQ were observed between T1 and T3 ( P < 0.05). A significant association was found between the total yearly hours of training and the change in the total cell count ( r2 = 0.74; P = 0.006), and a number of other sputum cell counts between T1 and T3. No changes were observed for any domain of the REST-Q. The results of this study demonstrate that airway inflammation and cough symptoms are significantly increased in elite female cross-country skiers across a year of training and racing. The increase in airway inflammation is related to the total amount of training and is worse during the winter months when athletes are training and racing in cold, dry air. [ABSTRACT FROM AUTHOR]
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- 2016
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4. The Effects of Type 2 Diabetes on Lipoprotein Composition and Arterial Stiffness in Male Youth.
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Gordon, Scott M., Davidson, W. Sean, Urbina, Elaine M., Dolan, Lawrence M., Heink, Anna, Huaiyu Zang, Lu, L. Jason, and Shah, Amy S.
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HIGH density lipoproteins , *TYPE 2 diabetes , *DIABETES in adolescence , *GEL permeation chromatography , *PROTEINS , *PHOSPHOLIPIDS , *PROTEOMICS - Abstract
Recent studies suggest HDL exists as numerous subpopulations with distinct protein/lipid compositions that are not reflected in the HDL cholesterol (HDL-C) number. In this study, we sought to evaluate HDL subpopulations in adolescents with type 2 diabetes (T2D) to determine if changes in HDL composition are associated with early vascular disease. T2D (n = 10), lean (n = 9), and obese (n = 11) youth were recruited. Plasma was fractionated using gel-filtration chromatography, and lipid-associated proteins were identified using mass spectrometry. Concurrently, vascular stiffness was assessed using pulse wave velocity (PWV). We found youth with T2D exhibited decreased phospholipid content in fractions containing large HDL particles that was inversely associated with PWV (P < 0.001). No association was noted between HDL-C and PWV. Proteomic analysis revealed changes in 7 of 45 identified proteins in the T2D group, including apolipoprotein (apo) A-II, apoE, and paraoxonase-1 (P < 0.05). Our data demonstrate early changes in the lipid and protein compositions of specific HDL subspecies in adolescents with T2D that are related to early markers of arterial disease. These findings suggest that analyzing the composition of HDL, rather than HDL-C, may be useful in assessing cardiovascular risk in this population. [ABSTRACT FROM AUTHOR]
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- 2013
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5. Adaptation genomics: next generation sequencing reveals a shared haplotype for rapid early development in geographically and genetically distant populations of rainbow trout.
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DAVIDSON, W. S.
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GENOMICS , *RAINBOW trout , *FISH adaptation , *ECOLOGICAL genetics , *BIOLOGICAL evolution , *NATURAL selection , *GENETICS - Abstract
Local adaptation occurs when a population evolves a phenotype that confers a selective advantage in its local environment, but which may not be advantageous in other habitats. Restricted gene flow and strong selection pressures are prerequisites for local adaptation. Fishes in the family Salmonidae are predicted to provide numerous examples of local adaptation because of the high fidelity of returning to spawn in their natal streams, which results in highly structured populations, and the wide diversity of environments that salmonids have colonized. These conditions are ideally suited for producing a set of specialist phenotypes, whose fitness is maximized for one specific habitat, rather than a generalist phenotype similarly viable in several environments. Understanding patterns and processes leading to local adaptations has long been a goal of evolutionary biology, but it is only recently that identifying the molecular basis for local adaptation has become feasible because of advances in genomic technologies. The study of shared adaptive phenotypes in populations that are both geographically distant and genetically distinct should reveal some of the fundamental molecular mechanisms associated with local adaptation. In this issue of Molecular Ecology, make a significant contribution to the development of adaptation genomics. This study suggests that salmonids use standing genetic variation to select beneficial alleles for local adaptations rather than de novo mutations in the same gene or alternative physiological pathways. Identifying the genetic basis for local adaptation has major implications for the management, conservation and potential restoration of salmonid populations. [ABSTRACT FROM AUTHOR]
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- 2012
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6. The role of hydrophobic and negatively charged surface patches of lipid-free apolipoprotein A-I in lipid binding and ABCA1-mediated cholesterol efflux
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Smith, Loren E. and Davidson, W. Sean
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APOLIPOPROTEINS , *ATP-binding cassette transporters , *HYDROPHOBIC surfaces , *CHOLESTEROL , *CIRCULAR dichroism , *ESCHERICHIA coli , *LEUCINE - Abstract
Abstract: Recent models of lipid-free apolipoprotein A-I, including a cross-link/homology model and an X-ray crystal structure have identified two potential functionally relevant “patches” on the protein surface. The first is a hydrophobic surface patch composed of leucine residues 42, 44, 46, and 47 and the second a negatively charged patch composed of glutamic acid residues 179, 191, and 198. To determine if these domains play a functional role, these surface patches were disrupted by site-directed mutagenesis and the bacterially expressed mutants were compared with respect to their ability to bind lipid and stimulate ABCA1-mediated cholesterol efflux. It was found that neither patch plays a significant functional role in the ability of apoA-I to accept cholesterol in an ABCA1-dependent manner, but that the hydrophobic patch did affect the ability of apoA-I to clear DMPC liposomes. Interestingly, contrary to previous predictions, disruption of the hydrophobic surface patch enhanced the lipid binding ability of apoA-I. The hydrophobic surface patch may be important to the structural stability of lipid-free apoA-I or may be a necessary permissive structural element for lipid binding. [Copyright &y& Elsevier]
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- 2010
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7. The Structure of Apolipoprotein A-I in High Density Lipoproteins.
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Davidson, W. Sean and Thompson, Thomas B.
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APOLIPOPROTEINS , *HIGH density lipoproteins , *BLOOD lipoproteins , *BLOOD lipids , *BLOOD proteins , *LIPOPROTEINS - Abstract
The article reviews the recent efforts in understanding the structure of Apolipoprotein A-I, the defining protein component of high density lipoproteins (HDL) in various stages of the reverse cholesterol transport (RCT) pathway. Recent discoveries of HDL-interacting cell surface proteins helped in defining RCT steps. There is also growing evidence that significant protective effects may be contributed by HDL anti-inflammatory properties through cell signaling pathways.
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- 2007
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8. Three-Dimensional Medipix--A New Generation of X-Ray Detectors.
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Wright, V. A., Davidson, W. D., Melone, J. J., O'Shea, V., Smith, K. M., Donohue, L., Lea, L., Robb, K., Nenonen, S., and Sipila, H.
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DETECTORS , *X-rays , *SYNCHROTRON radiation , *ELECTROMAGNETIC waves , *DIAGNOSTIC imaging , *ELECTROMAGNETIC theory - Abstract
Three-dimensional (3-D) detectors have many potential advantages over standard planar devices and for a range of applications, e.g., high energy physics, synchrotron radiation detection and medical imaging. One such area is minimizing the effects due to charge sharing between adjacent pixels. Simulations of pixel detector compatible with the Medipix2 chip show that 3-D detectors have significant advantages in this area. In addition, a 64 × 64 pixel 3-D detector designed for read-out by the Medipixi chip has been fabricated. The sensors have been characterized using current-voltage and capacitance measurements. They are currently being bump-bonded to the Medipixi chip at the University of Freiburg in order for the complete system to be evaluated using a X-ray source. [ABSTRACT FROM AUTHOR]
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- 2005
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9. The Spatial Organization of Apolipoprotein A-I on the Edge of Discoidal High Density Lipoprotein Particles.
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Davidson, W. Sean and Hilliard, George M.
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APOLIPOPROTEINS , *LIPOPROTEINS - Abstract
The three-dimensional structure of human apoA-I on nascent, discoidal HDL particles has been debated extensively over the past 25 years. Recent evidence has demonstrated that the α-helical domains of apoA-I are arranged in a belt-like orientation with the long axis of the helices perpendicular to the phospholipid acyl chains on the disc edge. However, experimental information on the spatial relationships between apoA-I molecules on the disc is lacking. To address this issue, we have taken advantage of recent advances in mass spectrometry technology combined with cleavable crosslinking chemistry to derive a set of distance constraints suitable for testing apoA-I structural models. We generated highly homogeneous, reconstituted HDL particles containing two molecules of apoA-I. These were treated with a thiol-cleavable cross-linking agent, which covalently joined Lys residues in close proximity within or between molecules of apoA-I in the disc. The cross-linked discs were then exhaustively trypsinized to generate a discrete population of peptides. The resulting peptides were analyzed by liquid chromatography/mass spectrometry before and after cleavage of the cross-links, and resulting peaks were identified based on the theoretical tryptic cleavage of apoA-I. We identified at least 8 intramolecular and 7 intermolecular cross-links in the particle. The distance constraints are used to analyze three current models of apoA-I structure. The results strongly support the presence of the salt-bridge interactions that were predicted to occur in the "double belt" model of apoA-I, but a helical hairpin model containing the same salt-bridge docking interface is also consistent with the data. [ABSTRACT FROM AUTHOR]
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- 2003
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10. The HDL Proteome Watch: Compilation of studies leads to new insights on HDL function.
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Davidson, W. Sean, Shah, Amy S., Sexmith, Hannah, and Gordon, Scott M.
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PROTEOMICS , *CARRIER proteins , *CELL adhesion , *NATURAL immunity , *CELL adhesion molecules , *PROTEIN transport - Abstract
High density lipoproteins (HDL) are a heterogeneous family of particles that contain distinct complements of proteins that define their function. Thus, it is important to accurately and sensitively identify proteins associated with HDL. Here we highlight the HDL Proteome Watch Database which tracks proteomics studies from different laboratories across the world. In 45 published reports, almost 1000 individual proteins have been detected in preparations of HDL. Of these, 251 have been identified in at least three different laboratories. The known functions of these consensus HDL proteins go well beyond traditionally recognized roles in lipid transport with many proteins pointing to HDL functions in innate immunity, inflammation, cell adhesion, hemostasis and protease regulation, and even vitamin and metal binding. The HDL proteome derived across multiple studies using various methodologies provides confidence in protein identifications that can offer interesting new insights into HDL function. We also point out significant issues that will require additional study going forward. [ABSTRACT FROM AUTHOR]
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- 2022
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11. Structural organization of the N-terminal domain of apolipoprotein A-I: Studies of tryptophan....
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Davidson, W. Sean and Arnvig-McGuire, Kirsten
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APOLIPOPROTEINS , *TRYPTOPHAN , *MUTAGENESIS - Abstract
Examines the mutagenesis of proapolipoprotein (proapo) A-I in the lipid free state and the tryptophan residues in the N-terminal region. Effect of the Phe-Trp substitution on the proapo A-I stability; Steady-state fluorescence of the free and lipid-bound proteins; Description of the time-resolved lifetime and anisotropy of the proapo A-I.
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- 1999
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12. The role of apolipoprotein AI domains in lipid binding.
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Davidson, W. Sean and Hazlett, Theodore
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APOLIPOPROTEINS , *CHEMICAL structure - Abstract
Studies the structure of apolipoprotein AI, the principal protein constituent of high density lipoproteins. Self-association of the lipid-free apolipoproteins; Physical properties of rHDL particles; Secondary structure and conformational stability of lipid-free apolipoproteins and rHDL particles.
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- 1996
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13. A cylindrically symmetric solution of Einstein’s equations describing gravitational collapse of stiff fluid.
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Davidson, W.
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EINSTEIN field equations , *SYMMETRY - Abstract
This article presents a one-parameter solution of Einstein’s equations that describes a stiff fluid in gravitational collapse with cylindrical symmetry. The boundary of the fluid, of comoving radial coordinate r=r*, is a hypersurface which is regular as long as r* is chosen ≤π/2a, a being the solution parameter. The density μ and pressure p (μ=p) are well behaved (∂μ/∂r≤0) in the interval 0≤r≤r* and if we allow r* arbitrarily close to π/2a then μ*→0 as r*→π/2a. The hypersurface r=π/2a is singular as measured by the Riemann invariant RijkmRijkm. The gravitational collapse takes place in the coordinate time interval 0≤t≤t*, t*=π/4a being the moment of total collapse when μ becomes infinite. Both the geometry and the geodesic equations indicate that for r≤r*, t≤t* there are regular trapped two surfaces in the space–time. The geometrical and kinematic properties of the solution as well as the incidence of gravitational waves are discussed. Two numerical examples of the physical parameters, corresponding to two choices of the parameter a, are given to describe (a) the collapse of a stiff fluid initially of nuclear density and of radius ∼ 20 km and (b) the contraction to a singularity of a cosmological distribution of stiff matter. [ABSTRACT FROM AUTHOR]
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- 1993
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14. Liver damage in patients with CSF-producing tumors.
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Sadoff, L and Davidson, W
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ANEMIA , *CEREBROSPINAL fluid , *CYTOKINES , *LIVER , *PARANEOPLASTIC syndromes , *TERMS & phrases - Published
- 1995
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15. Dermoscopy use by Canadian dermatologists and dermatology residents: a cross-sectional nationwide study.
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Burbidge, T., Davidson, W., and Robertson, L.
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MELANOMA diagnosis , *DERMATOLOGISTS , *CROSS-sectional method - Published
- 2017
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16. Flipped C-Terminal Ends of APOA1 Promote ABCA1-Dependent Cholesterol Efflux by Small HDLs.
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Yi He, Pavanello, Chiara, Hutchins, Patrick M., Chongren Tang, Pourmousa, Mohsen, Vaisar, Tomas, Song, Hyun D., Pastor, Richard W., Remaley, Alan T., Goldberg, Ira J., Costacou, Tina, Davidson, W. Sean, Bornfeldt, Karin E., Calabresi, Laura, Segrest, Jere P., and Heinecke, Jay W.
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CHOLESTERYL ester transfer protein , *APOLIPOPROTEIN A , *ATP-binding cassette transporters , *CHOLESTEROL , *HIGH density lipoproteins , *ION mobility , *MOLECULAR dynamics - Abstract
BACKGROUND: Cholesterol efflux capacity (CEC) predicts cardiovascular disease independently of high-density lipoprotein (HDL) cholesterol levels. Isolated small HDL particles are potent promoters of macrophage CEC by the ABCA1 (ATPbinding cassette transporter A1) pathway, but the underlying mechanisms are unclear. METHODS: We used model system studies of reconstituted HDL and plasma from control and lecithin-cholesterol acyltransferase (LCAT)-deficient subjects to investigate the relationships among the sizes of HDL particles, the structure of APOA1 (apolipoprotein A1) in the different particles, and the CECs of plasma and isolated HDLs. RESULTS: We quantified macrophage and ABCA1 CEC of 4 distinct sizes of reconstituted HDL. CEC increased as particle size decreased. Tandem mass spectrometric analysis of chemically cross-linked peptides and molecular dynamics simulations of APOA1, the major protein of HDL, indicated that the mobility of C-terminus of that protein was markedly higher and flipped off the surface in the smallest particles. To explore the physiological relevance of the model system studies, we isolated HDL from LCAT-deficient subjects, whose small HDLs (like reconstituted HDLs) are discoidal and composed of APOA1, cholesterol, and phospholipid. Despite their very low plasma levels of HDL particles, these subjects had normal CEC. In both the LCAT-deficient subjects and control subjects, the CEC of isolated extra-small HDL (a mixture of extra-small and small HDL by calibrated ion mobility analysis) was 3- to 5-fold greater than that of the larger sizes of isolated HDL. Incubating LCAT-deficient plasma and control plasma with human LCAT converted extra-small and small HDL particles into larger particles, and it markedly inhibited CEC. CONCLUSIONS: We present a mechanism for the enhanced CEC of small HDLs. In smaller particles, the C-termini of the 2 antiparallel molecules of APOA1 are "flipped" off the lipid surface of HDL. This extended conformation allows them to engage with ABCA1. In contrast, the C-termini of larger HDLs are unable to interact productively with ABCA1 because they form a helical bundle that strongly adheres to the lipid on the particle. Enhanced CEC, as seen with the smaller particles, predicts decreased cardiovascular disease risk. Thus, extra-small and small HDLs may be key mediators and indicators of the cardioprotective effects of HDL. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Erratum. The Effects of Type 2 Diabetes on Lipoprotein Composition and Arterial Stiffness in Male Youth. Diabetes 2013;62:2958-2967.
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Gordon, Scott M, Davidson, W Sean, Urbina, Elaine M, Dolan, Lawrence M, Heink, Anna, Zang, Huaiyu, Lu, L Jason, and Shah, Amy S
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TYPE 2 diabetes , *LIPOPROTEINS , *TEENAGE boys , *PHYSIOLOGY , *DISEASES - Abstract
A correction to the article "The Effects of Type 2 Diabetes on Lipoprotein Composition and Arterial Stiffness in Male Youth" is presented.
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- 2016
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18. A novel assay to measure low-density lipoproteins binding to proteoglycans.
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Geh, Esmond N., Swertfeger, Debi K., Sexmith, Hannah, Heink, Anna, Tarapore, Pheruza, Melchior, John T., Davidson, W. Sean, and Shah, Amy Sanghavi
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PROTEOGLYCANS , *VASCULAR smooth muscle , *LOW density lipoproteins , *BINDING site assay , *APOLIPOPROTEINS , *CHONDROITIN sulfate proteoglycan - Abstract
Background: The binding of low-density lipoprotein (LDL) to proteoglycans (PGs) in the extracellular matrix (ECM) of the arterial intima is a key initial step in the development of atherosclerosis. Although many techniques have been developed to assess this binding, most of the methods are labor-intensive and technically challenging to standardize across research laboratories. Thus, sensitive, and reproducible assay to detect LDL binding to PGs is needed to screen clinical populations for atherosclerosis risk. Objectives: The aim of this study was to develop a quantitative, and reproducible assay to evaluate the affinity of LDL towards PGs and to replicate previously published results on LDL-PG binding. Methods: Immunofluorescence microscopy was performed to visualize the binding of LDL to PGs using mouse vascular smooth muscle (MOVAS) cells. An in-cell ELISA (ICE) was also developed and optimized to quantitatively measure LDL-PG binding using fixed MOVAS cells cultured in a 96-well format. Results: We used the ICE assay to show that, despite equal APOB concentrations, LDL isolated from adults with cardiovascular disease bound to PG to a greater extent than LDL isolated from adults without cardiovascular disease (p<0.05). Conclusion: We have developed an LDL-PG binding assay that is capable of detecting differences in PG binding affinities despite equal APOB concentrations. Future work will focus on candidate apolipoproteins that enhance or diminish this interaction. [ABSTRACT FROM AUTHOR]
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- 2024
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19. A big-bang cylindrically symmetric radiation universe.
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Davidson, W.
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EINSTEIN field equations , *FLUIDS , *BIG bang theory - Abstract
A new nonstationary cylindrically symmetric solution to Einstein’s equations is given for a perfect fluid. The solution has a time singularity (t=0) at which the pressure p and density μ are equal to +∞ throughout the radial coordinate range 0≤r<∞, but for t>0 the model is well behaved. The fluid has the equation of state p= (1)/(3) μ, and for any fixed t>0 both p and μ are finite, decreasing monotonically to zero as r increases through the range 0≤r<∞. At any fixed r (0≤r<∞) both p and μ decrease steadily to zero as t increases through the range 0≤t<∞. The motion is irrotational, with shear, expansion and acceleration while the solution is algebraically general of Petrov type I. [ABSTRACT FROM AUTHOR]
- Published
- 1991
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20. Internal and external metrics for a perfect fluid cylinder in general relativity.
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Davidson, W.
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EINSTEIN field equations , *FLUIDS , *CYLINDER (Shapes) , *EQUATIONS of state - Abstract
A solution to Einstein’s equations describing a perfect fluid cylinder of finite radius is presented. The proper density μ and pressure p of the fluid are physically well behaved in the radial coordinate range 0≤r≤r1. On the axis (r=0) the solution is regular and μ and p are finite and positive. As r increases μ and p decrease steadily through positive values, p vanishing at r=r1. The ratio p/μ (<1) is also monotonically decreasing, as is also the velocity of sound a (<1) in the fluid. The equation of state is p= (3)/(7) μ-Nμ3/10, where N is a positive constant. The matching metric for the vacuum exterior to the cylinder is given, so that the space-time is complete and nonsingular. [ABSTRACT FROM AUTHOR]
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- 1990
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21. A static cylindrically symmetric solution for perfect fluid in general relativity.
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Davidson, W.
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RELATIVISTIC mechanics , *MATHEMATICAL physics - Abstract
A solution of Einstein’s equations for a stationary cylindrically symmetric perfect fluid is presented. The extent of the fluid is radially infinite but the proper density μ and pressure p are physically well behaved everywhere. On the axis μ and p are finite and positive. As the radial coordinate ρ increases μ and p decrease monotonically to zero at infinity. The ratio p/μ(<1) also steadily decreases. It is shown that the regularity condition at the axis is satisfied. The solution is algebraically general of Petrov type I. [ABSTRACT FROM AUTHOR]
- Published
- 1989
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22. Systematic review of type 1 diabetes biomarkers reveals regulation in circulating proteins related to complement, lipid metabolism, and immune response.
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Sarkar, Soumyadeep, Elliott, Emily C., Henry, Hayden R., Ludovico, Ivo Díaz, Melchior, John T., Frazer-Abel, Ashley, Webb-Robertson, Bobbie-Jo, Davidson, W. Sean, Holers, V. Michael, Rewers, Marian J., Metz, Thomas O., and Nakayasu, Ernesto S.
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TYPE 1 diabetes , *LIPID metabolism , *AUTOANTIBODIES , *IMMUNE response , *HYPERGLYCEMIA , *BIOMARKERS , *PROTEINS - Abstract
Background: Type 1 diabetes (T1D) results from an autoimmune attack of the pancreatic β cells that progresses to dysglycemia and symptomatic hyperglycemia. Current biomarkers to track this evolution are limited, with development of islet autoantibodies marking the onset of autoimmunity and metabolic tests used to detect dysglycemia. Therefore, additional biomarkers are needed to better track disease initiation and progression. Multiple clinical studies have used proteomics to identify biomarker candidates. However, most of the studies were limited to the initial candidate identification, which needs to be further validated and have assays developed for clinical use. Here we curate these studies to help prioritize biomarker candidates for validation studies and to obtain a broader view of processes regulated during disease development. Methods: This systematic review was registered with Open Science Framework (https://doi.org/10.17605/OSF.IO/N8TSA). Using PRISMA guidelines, we conducted a systematic search of proteomics studies of T1D in the PubMed to identify putative protein biomarkers of the disease. Studies that performed mass spectrometry-based untargeted/targeted proteomic analysis of human serum/plasma of control, pre-seroconversion, post-seroconversion, and/or T1D-diagnosed subjects were included. For unbiased screening, 3 reviewers screened all the articles independently using the pre-determined criteria. Results: A total of 13 studies met our inclusion criteria, resulting in the identification of 266 unique proteins, with 31 (11.6%) being identified across 3 or more studies. The circulating protein biomarkers were found to be enriched in complement, lipid metabolism, and immune response pathways, all of which are found to be dysregulated in different phases of T1D development. We found 2 subsets: 17 proteins (C3, C1R, C8G, C4B, IBP2, IBP3, ITIH1, ITIH2, BTD, APOE, TETN, C1S, C6A3, SAA4, ALS, SEPP1 and PI16) and 3 proteins (C3, CLUS and C4A) have consistent regulation in at least 2 independent studies at post-seroconversion and post-diagnosis compared to controls, respectively, making them strong candidates for clinical assay development. Conclusions: Biomarkers analyzed in this systematic review highlight alterations in specific biological processes in T1D, including complement, lipid metabolism, and immune response pathways, and may have potential for further use in the clinic as prognostic or diagnostic assays. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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23. Studies in genetically modified mice implicate maternal HDL as a mediator of fetal growth.
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Rebholz, Sandra L., Melchior, John T., Davidson, W. Sean, Jones, Helen N., Welge, Jeffrey A., Prentice, Andrew M., Moore, Sophie E., and Woollett, Laura A.
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Studies in humans have shown a direct association between maternal plasma cholesterol concentrations and infant birthweight. Similarly, previous studies in our laboratory have shown that chow-fed mice lacking apolipoprotein (apo) A-I, the major protein in HDL, have low HDL-cholesterol (HDL-C) concentrations and smaller fetuses in midgestation. In the current study, we measured fetal weights in mice with varying levels of apoA-I gene dose (knockout, wild-type, and transgenic) and examined metabolic pathways known to affect fetal growth. As expected, we found the differences in apoA-I expression led to changes in HDL particle size and protein cargo as well as plasma cholesterol concentrations. Fetal masses correlated directly with maternal plasma cholesterol and apoA-I concentrations, but placental masses and histology did not differ between groups of mice. There was no significant difference in glucose or amino acid transport to the fetus or in expression levels of the glucose (glucose transporter 1 and 2) or amino acid (sodium-coupled neutral amino acid transporter 1 and 2) transporters in whole placentas, although there was a trend for greater uptake of both nutrients in the whole fetal unit (fetus + placenta) of mice with greater apoA-I levels; significant differences in transport rates occurred when mice without apoA-I (knockout) vs. mice with apoA-I (wild-type and transgenic) were compared. Glucose tolerance tests were improved in the mice with the highest level of apoA-I, suggesting increased insulin-induced uptake of glucose by tissues of apoA-I transgenic mice. Thus, maternal HDL is associated with fetal growth, an effect that is likely mediated by plasma cholesterol or other HDL-cargo, including apolipoproteins or complement system proteins. A direct role of enhanced glucose and/or amino acid transport cannot be excluded. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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24. Abstract: 80 PROTEOMIC ANALYSIS OF DEFINED HDL SUBPOPULATIONS REVEALS PARTICLE-SPECIFIC PROTEIN CLUSTERS: RELEVANCE TO ANTIOXIDATIVE FUNCTION
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Davidson, W, Silva, R, Chantepie, S, Lagor, W, Chapman, M, and Kontush, A
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- 2009
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25. Chemical factors induce aggregative multicellularity in a close unicellular relative of animals.
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Ros-Rocher, Núria, Kidner, Ria Q., Gerdt, Catherine, Davidson, W. Sean, Ruiz-Trillo, Iñaki, and Gerdt, Joseph P.
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LIFE cycles (Biology) , *MULTICELLULAR organisms , *CALCIUM ions , *LIPOPROTEINS , *RELATIVES - Abstract
Regulated cellular aggregation is an essential process for development and healing in many animal tissues. In some animals and a few distantly related unicellular species, cellular aggregation is regulated by diffusible chemical cues. However, it is unclear whether regulated cellular aggregation was part of the life cycles of the first multicellular animals and/or their unicellular ancestors. To fill this gap, we investigated the triggers of cellular aggregation in one of animals' closest unicellular living relatives--the filasterean Capsaspora owczarzaki. We discovered that Capsaspora aggregation is induced by chemical cues, as observed in some of the earliest branching animals and other unicellular species. Specifically, we found that calcium ions and lipids present in lipoproteins function together to induce aggregation of viable Capsaspora cells. We also found that this multicellular stage is reversible as depletion of the cues triggers disaggregation, which can be overcome upon reinduction. Our finding demonstrates that chemically regulated aggregation is important across diverse members of the holozoan clade. Therefore, this phenotype was plausibly integral to the life cycles of the unicellular ancestors of animals. [ABSTRACT FROM AUTHOR]
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- 2023
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26. Lipoprotein subfraction patterns throughout gestation in The Gambia: changes in subfraction composition and their relationships with infant birth weights.
- Author
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Woo, Jessica G., Melchior, John T., Swertfeger, Debi K., Remaley, Alan T., Sise, Ebrima A., Sosseh, Fatou, Welge, Jeffrey A., Prentice, Andrew M., Davidson, W. Sean, Moore, Sophie E., and Woollett, Laura A.
- Subjects
- *
WEIGHT in infancy , *BIRTH weight , *LOW birth weight , *PREGNANCY , *PREGNANCY outcomes , *BLOOD lipoproteins , *LOW density lipoproteins - Abstract
Background: Lipoprotein subfraction concentrations have been shown to change as gestation progresses in resource-rich settings. The objective of the current study was to evaluate the impact of pregnancy on different-sized lipoprotein particle concentrations and compositions in a resource-poor setting. Method: Samples were collected from pregnant women in rural Gambia at enrollment (8–20 weeks), 20 weeks, and 30 weeks of gestation. Concentrations of different-sized high-density, low-density, and triglyceride-rich lipoprotein particles (HDL, LDL, and TRL, respectively) were measured by nuclear magnetic resonance in 126 pooled plasma samples from a subset of women. HDL was isolated and the HDL proteome evaluated using mass spectroscopy. Subfraction concentrations from women in The Gambia were also compared to concentrations in women in the U.S. in mid gestation. Results: Total lipoprotein particles and all-sized TRL, LDL, and HDL particle concentrations increased during gestation, with the exception of medium-sized LDL and HDL particles which decreased. Subfraction concentrations were not associated with infant birth weights, though relationships were found between some lipoprotein subfraction concentrations in women with normal versus low birth weight infants (< 2500 kg). HDL's proteome also changed during gestation, showing enrichment in proteins associated with metal ion binding, hemostasis, lipid metabolism, protease inhibitors, proteolysis, and complement activation. Compared to women in the U.S., Gambian women had lower large- and small-sized LDL and HDL concentrations, but similar medium-sized LDL and HDL concentrations. Conclusions: Most lipoprotein subfraction concentrations increase throughout pregnancy in Gambian women and are lower in Gambian vs U.S. women, the exception being medium-sized LDL and HDL particle concentrations which decrease during gestation and are similar in both cohorts of women. The proteomes of HDL also change in ways to support gestation. These changes warrant further study to determine how a lack of change or different changes could impact negative pregnancy outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
27. Specific sequences in N termini of apolipoprotein A-IV modulate its anorectic effect.
- Author
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Wang, Fei, Pearson, Kevin J., Davidson, W. Sean, and Tso, Patrick
- Subjects
- *
N-terminal residues , *APOLIPOPROTEIN A , *APPETITE depressants , *SMALL intestine , *INGESTION , *RAT physiology - Abstract
Abstract: Rodent apoA-IV is expressed predominantly in small intestine and also expressed to a small extent in liver and hypothalamus. ApoA-IV has been shown to inhibit food intake in rats when injected centrally. In the current study, we hypothesize that a specific sequence within rat apoA-IV is responsible for mediating the anorectic effect. We use a bacterial expression system to generate truncation mutants (Δ249–371, Δ117–371 and Δ1–61) of rat apoA-IV and assess the ability of various regions of the molecule to inhibit food intake. The results indicate that a responsible sequence exists within the N-terminal 61 amino acids of rat apoA-IV. Synthetic peptides (1–30 EVTSDQVANVMWDYFTQLSNNAKEAVEQLQ, 1–15 EVTSDQVANVMWDYF and 17–30 QLSNNAKEAVEQLQ) were used to specify the region in between residues 1 and 30. A 14-mer peptide (17–30) encompassing this sequence was capable of reducing food intake in a dose-dependent manner whereas a peptide designed on a more C-terminal region (211–232) of apoA-IV (QEKLNHQMEGLAFQMKKNAEEL) failed to exhibit the dose-dependent anorectic effect. The isolation of this sequence provides a valuable tool for future work directed at identifying apoA-IV binding proteins and is a key step for exploring the potential of therapeutic manipulation of food intake via this pathway. [Copyright &y& Elsevier]
- Published
- 2013
- Full Text
- View/download PDF
28. Cholesterol Efflux and Atheroprotection Advancing the Concept of Reverse Cholesterol Transport.
- Author
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Rosenson, Robert S., Brewer Jr., H. Bryan, Davidson, W. Sean, Fayad, Zahi A., Fuster, Valentin, Goldstein, James, Hellerstein, Marc, Jiang, Xian-Cheng, Phillips, Michael C., Rader, Daniel J., Remaley, Alan T., Rothblat, George H., Tall, Alan R., and Yvan-Charvet, Laurent
- Subjects
- *
CHOLESTEROL , *LIPOPROTEINS , *APOLIPOPROTEINS , *ATHEROSCLEROSIS , *MOLECULAR pathology , *BIOLOGICAL assay of antioxidants , *PROTEIN transport - Abstract
The article discusses the molecular and cellular pathways responsible for macrophage cholesterol efflux and cholesterol deposition along with role of high-density lipoprotein (HDL). It mentions that HDL is supposed to have an antiatherosclerotic properties and it also helps in mediating antioxidant activity and transportation of proteins. Studies have shown that fecal sterol excretion is not responsible for HDL-mediated macrophage cholesterol efflux and atheroprotection.
- Published
- 2012
- Full Text
- View/download PDF
29. ApoA-I induced CD31 in bone marrow-derived vascular progenitor cells increases adhesion: Implications for vascular repair
- Author
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Mythreye, Karthikeyan, Satterwhite, Lisa L., Davidson, W. Sean, and Goldschmidt-Clermont, Pascal J.
- Subjects
- *
CELL adhesion molecules , *APOLIPOPROTEINS , *BONE marrow cells , *CELL adhesion , *BLOOD-vessel abnormalities , *BIOMEDICAL engineering , *BLOOD disease treatment - Abstract
Abstract: Transgenic over expression of apolipoprotein A-I (ApoA-I) the major structural apolipoprotein of HDL appears to convey the most consistent and strongest anti atherogenic effect observed in animal models so far. We tested the hypothesis that ApoA-I mediates its cardio protective effects additionally through ApoA-I induced differentiation of bone marrow-derived progenitor cells in vitro. This study demonstrates that lineage negative bone marrow cells (lin− BMCs) alter and differentiate in response to free ApoA-I. We find that lin− BMCs in culture treated with recombinant free ApoA-I at a concentration of 0.4 μM are twice as large in size and have altered cell morphology compared to untreated cells; untreated cells retain the original spheroid morphology. Further, the total number of CD31 positive cells in the ApoA-I treated population consistently increased by two fold. This phenotype was significantly reduced in untreated cells and points towards a novel ApoA-I dependent differentiation. A protein lacking its best lipid-binding region (ApoA-IΔ10) did not stimulate any changes in the lin−BMCs indicating that ApoA-I may mediate its effects by regulating cholesterol efflux. The increased CD31 correlates with an increased ability of the lin− BMCs to adhere to both fibronectin and mouse brain endothelial cells. Our results provide the first evidence that exogenous free ApoA-I has the capacity to change the characteristics of progenitor cell populations and suggests a novel mechanism by which HDL may mediate its cardiovascular benefits. [Copyright &y& Elsevier]
- Published
- 2008
- Full Text
- View/download PDF
30. Carboxyl Ester Lipase Expression in Macrophages Increases Cholesteryl Ester Accumulation and Promotes Atherosclerosis.
- Author
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Kodvawala, Ahmer, Ghering, Amy B., Davidson, W. Sean, and Hui, David Y.
- Subjects
- *
ENZYMES , *ESTERASES , *GENE expression , *GENETIC regulation , *ATHEROSCLEROSIS , *LOW-cholesterol diet , *ISOPENTENOIDS , *MACROPHAGES , *TRANSGENIC mice - Abstract
Carboxyl ester lipase (CEL, also called cholesterol esterase or bile salt-dependent lipase) is a lipolytic enzyme capable of hydrolyzing cholesteryl esters, triacylglycerols, and phospholipids in a trihydroxy bile salt-dependent manner but hydrolyzes ceramides and lysophospholipids via bile salt-independent mechanisms. Although CEL is synthesized predominantly in the pancreas, a low level of CEL expression was reported in human macrophages. This study used transgenic mice with macrophage CEL expression at levels comparable with that observed in human macrophages to explore the functional role and physiological significance of macrophage CEL expression. Peritoneal macrophages from CEL transgenic mice displayed a 4-fold increase in [³H]oleate incorporation into cholesteryl [³H]oleate compared with CEL-negative macrophages when the cells were incubated under basal conditions in vitro. When challenged with acetylated low density lipoprotein, cholesteryl ester accumulation was 2.5-fold higher in macrophages expressing the CEL transgene. The differences in cholesteryl ester accumulation were attributed to the lower levels of ceramide and lysophosphatidylcholine in CEL-expressing cells than in CEL-negative cells. CEL transgenic mice bred to an atherosclerosis susceptible apoE-/- background displayed an approximate 4-fold higher atherosclerotic lesion area than apoE-/- mice without the CEL transgene when both were fed a high fat/cholesterol diet. Plasma level of the atherogenic lysophosphatidylcholine was lower in the CEL transgenic mice, but plasma cholesterol level and lipoprotein profile were similar between the two groups. These studies documented that CEL expression in macrophages is pro-atherogenic and that the mechanism is because of its hydrolysis of ceramide and lysophosphatidylcholine in promoting cholesterol esterification and decreasing cholesterol efflux. [ABSTRACT FROM AUTHOR]
- Published
- 2005
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- View/download PDF
31. Ceramide Enhances Cholesterol Efflux to Apolipoprotein A-I by Increasing the Cell Surface Presence of ATP-binding Cassette Transporter A1.
- Author
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Witting, Scott R., Maiorano, J. Nicholas, and Davidson, W. Sean
- Subjects
- *
HIGH density lipoproteins , *CARRIER proteins , *CERAMIDES , *CELL membranes - Abstract
It is widely accepted that functional ATP-binding cassette transporter A1 (ABCA1) is critical for the formation of nascent high density lipoprotein particles. However, the cholesterol pool(s) and the cellular signaling processes utilized by the ABCA1-mediated pathway remain unclear. Sphingomyelin maintains a preferential interaction with cholesterol in membranes, and its catabolites, especially ceramide, are potent signaling molecules that could play a role in ABCA1 regulation or function. To study the potential role of ceramide in this process, we treated a variety of cell lines with 20 µM C[sub 2]-ceramide and examined apolipoprotein-mediated cholesterol efflux to lipid-free apoA-I. We found that cell lines expressing ABCA1 displayed 2-3-fold increases in cholesterol efflux to apoA-I. Cell lines not expressing ABCA1 were unaffected by ceramide. We further characterized the cholesterol efflux effect in Chinese hamstet ovary cells. Ceramide treatment did not cause significant cytotoxicity or apoptosis and did not affect cholesterol efflux to non-apolipoprotein acceptors. Raising endogenous ceramide levels increased cholesterol efflux to apoA-I. Using a cell surface biotinylation method, we found that the total cellular ABCA1 and that at the plasma membrane were increased with ceramide treatment. Also ceramide enhanced the binding of fluorescently labeled apoA-I to Chinese hamster ovary cells. These data suggest that ceramide may increase the plasma membrane content of ABCA1, leading to increased apoA-I binding and cholesterol efflux. [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
- View/download PDF
32. X-cell gill disease obliterates the lamellar blood supply in the Antarctic teleost, <em>Pagothenia borchgreviniki</em> (Boulenger 1902).
- Author
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Franklin, C. E., McKenzie, J. C., Davidson, W., and Carey, P. W.
- Subjects
- *
BACTERIAL gill disease , *HYPERPLASIA , *CELLULAR pathology , *BLOOD , *ARTERIES , *FISH anatomy - Abstract
Vascular corrosion casting, methods were used to elucidate the pathological effects of X-cell disease on the blood supply to the gills of the Antarctic teleost, Pagothenia borchgrevinki (Boulenger. 1902). Afferent and efferent branchial arteries were patent in X-cell diseased fish; however, the blood supply to the lamellae was markedly reduced or obliterated in areas in which there was a predominance of X-cells. The present authors believe that the tissue hyperplasia associated with X-cell disease results in the compression of the lamellar vascular bed which leads eventually to the occlusion of vessels. [ABSTRACT FROM AUTHOR]
- Published
- 1993
- Full Text
- View/download PDF
33. Low-density lipoprotein receptor-related protein 1 (LRP1) is a novel receptor for apolipoprotein A4 (APOA4) in adipose tissue.
- Author
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Qu, Jie, Fourman, Sarah, Fitzgerald, Maureen, Liu, Min, Nair, Supna, Oses-Prieto, Juan, Burlingame, Alma, Morris, John H., Davidson, W. Sean, Tso, Patrick, and Bhargava, Aditi
- Subjects
- *
LOW density lipoprotein receptors , *ADIPOSE tissues , *LIPID metabolism , *IMMUNOPRECIPITATION , *PHOSPHATIDYLINOSITOL 3-kinases - Abstract
Apolipoprotein A4 (APOA4) is one of the most abundant and versatile apolipoproteins facilitating lipid transport and metabolism. APOA4 is synthesized in the small intestine, packaged onto chylomicrons, secreted into intestinal lymph and transported via circulation to several tissues, including adipose. Since its discovery nearly 4 decades ago, to date, only platelet integrin αIIbβ3 has been identified as APOA4 receptor in the plasma. Using co-immunoprecipitation coupled with mass spectrometry, we probed the APOA4 interactome in mouse gonadal fat tissue, where ApoA4 gene is not transcribed but APOA4 protein is abundant. We demonstrate that lipoprotein receptor-related protein 1 (LRP1) is the cognate receptor for APOA4 in adipose tissue. LRP1 colocalized with APOA4 in adipocytes; it interacted with APOA4 under fasting condition and their interaction was enhanced during lipid feeding concomitant with increased APOA4 levels in plasma. In 3T3-L1 mature adipocytes, APOA4 promoted glucose uptake both in absence and presence of insulin in a dose-dependent manner. Knockdown of LRP1 abrogated APOA4-induced glucose uptake as well as activation of phosphatidylinositol 3 kinase (PI3K)-mediated protein kinase B (AKT). Taken together, we identified LRP1 as a novel receptor for APOA4 in promoting glucose uptake. Considering both APOA4 and LRP1 are multifunctional players in lipid and glucose metabolism, our finding opens up a door to better understand the molecular mechanisms along APOA4-LRP1 axis, whose dysregulation leads to obesity, cardiovascular disease, and diabetes. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
34. Legitimate and Illegitimate Paternalism in Polyethnic Conflicts (Book Review).
- Author
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Davidson, W. Todd
- Subjects
- LEGITIMATE & Illegitimate Paternalism in Polyethnic Conflicts (Book)
- Abstract
Reviews the book `Legitimate and Illegitimate Paternalism in Polyethnic Conflicts,' by May Thorseth.
- Published
- 2000
35. Modified sites and functional consequences of 4-oxo-2-nonenal adducts in HDL that are elevated in familial hypercholesterolemia.
- Author
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May-Zhang, Linda S., Yermalitsky, Valery, Melchior, John T., Morris, Jamie, Tallman, Keri A., Borja, Mark S., Pleasent, Tiffany, Amarnath, Venkataraman, Wenliang Song, Yancey, Patricia G., Davidson, W. Sean, Linton, MacRae F., and Davies, Sean S.
- Subjects
- *
HIGH density lipoproteins , *CHEMICAL adducts , *OMEGA-6 fatty acids , *HYPERCHOLESTEREMIA , *TUMOR necrosis factors , *PROTEIN crosslinking , *UNSATURATED fatty acids - Abstract
The lipid aldehyde 4-oxo-2-nonenal (ONE) is a highly reactive protein crosslinker derived from peroxidation of n-6 polyunsaturated fatty acids and generated together with 4-hydroxynonenal (HNE). Lipid peroxidation product-mediated crosslinking of proteins in high-density lipoprotein (HDL) causes HDL dysfunction and contributes to atherogenesis. AlthoughHNEis relatively well-studied, the role of ONE in atherosclerosis and in modifying HDL is unknown. Here, we found that individuals with familial hypercholesterolemia (FH) had significantly higher ONE-ketoamide (lysine) adducts in HDL (54.6 ± 33.8 pmol/mg) than healthy controls (15.3 ± 5.6 pmol/mg). ONE crosslinked apolipoprotein A-I (apoA-I) on HDL at a concentration of > 3 mol ONE per 10 mol apoA-I (0.3 eq), which was 100-fold lower than HNE, but comparable to the potent protein crosslinker isolevuglandin. ONE-modified HDL partially inhibited HDL's ability to protect against lipopolysaccharide (LPS)-induced tumor necrosis factor α (TNFα) and interleukin-1 (IL-1β) gene expression in murine macrophages. At 3 eq, ONE dramatically decreased apoA-I exchange from HDL, from±46.5 to ±18.4% (p < 0.001). Surprisingly, ONE modification of HDL or apoA-I did not alter macrophage cholesterol efflux capacity. LCMS/MS analysis revealed that Lys-12, Lys-23, Lys-96, and Lys- 226 in apoA-I are modified by ONE ketoamide adducts. Compared with other dicarbonyl scavengers, pentylpyridoxamine (PPM) most efficaciously blocked ONE-induced protein crosslinking in HDL and also prevented HDL dysfunction in an in vitro model of inflammation. Our findings show that ONE-HDL adducts cause HDL dysfunction and are elevated in individuals with FH who have severe hypercholesterolemia. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
36. Apolipoprotein A-IV enhances cholecystokinnin secretion.
- Author
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Zhan, Jesse, Weng, Jonathan, Hunt, Brian G., Sean Davidson, W., Liu, Min, and Lo, Chunmin C.
- Subjects
- *
CHOLECYSTOKININ , *APOLIPOPROTEIN A , *HOMEOSTASIS , *SMALL interfering RNA , *LIPIDS - Abstract
Cholecystokinin (CCK) and apolipoprotein A-IV (ApoA-IV) are gastrointestinal peptides that play an important role in controlling energy homeostasis. Lymphatic ApoA-IV and plasma CCK secretion are mediated via a chylomicron formation-dependent pathway during a dietary lipid infusion. Given their similar roles as satiating proteins, the present study examines how the two peptides interact in their function. Specifically, this study sought to understand how ApoA-IV regulates CCK secretion. For this purpose, Cck gene expression in the small intestines of ApoA-IV knockout (ApoA-IV-KO) and wild-type (WT) mice were compared under an array of feeding conditions. When fed with a chow or high-fat diet (HFD), basal levels of Cck transcripts were significantly reduced in the duodenum of ApoA-IV-KO mice compared to WT mice. Furthermore, after an oral gavage of a lipid mixture, Cck gene expression in the duodenum was significantly reduced in ApoA-IV-KO mice relative to the change seen in WT mice. To determine the mechanism by which ApoA-IV modulates Cck gene expression, STC-1 cells were transfected with predesigned mouse lysophosphatidic acid receptor 5 (LPAR5 ) small interfering RNA (siRNA) to knockdown Lpar5 gene expression. In this in-vitro study, mouse recombinant ApoA-IV protein increased Cck gene expression in enteroendocrine STC-1 cells and stimulated CCK release from the STC-1 cells. However, the levels of CCK protein and Cck expression were attenuated when Lpar5 was knocked down in the STC-1 cells. Together these observations suggest that dietary lipid-induced ApoA-IV is associated with Cck synthesis in the duodenum and that ApoA-IV protein directly enhances CCK release through the activation of a LPAR5-dependent pathway. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
37. Silencing steroid receptor coactivator-1 in the nucleus of the solitary tract reduces estrogenic effects on feeding and apolipoprotein A-IV expression.
- Author
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Ling Shen, Yin Liu, Tso, Patrick, Wang, David Q.-H., Davidson, W. Sean, Woods, Stephen C., and Min Liu
- Subjects
- *
STEROID receptor coactivators , *SOLITARY nucleus , *APOLIPOPROTEIN A , *ESTRADIOL , *GENE expression - Abstract
We previously found that 17β-estradiol (E2) stimulates apolipoprotein A-IV (apoA-IV) gene expression in the nucleus of the solitary tract (NTS) of lean ovariectomized (OVX) rodents. Here we report that in the NTS of high-fat diet-induced obese (DIO) rats, the apoA-IV mRNA level is significantly reduced and that the estrogenic effects on apoA-IV gene expression and food intake are impaired. E2 regulates apoA-IV gene expression through its nuclear receptor α (ERα), which requires co-activators, such as steroid receptor coactivator-1 (SRC-1), to facilitate the transcription of targeted genes. Interestingly, SRC-1 gene expression is significantly reduced in DIO OVX rats. SRC-1 is colocalized with apoA-IV in the cells of the NTS and E2 treatment enhances the recruitment of ERα and SRC-1 to the estrogen response element at the apoA-V promoter, implying the participation of SRC-1 in E2's stimulatory effect on apoA-IV gene expression. Using small hairpin RNA (shRNA), which was validated in cultured neuronal cells, we found that SRC-1 gene knockdown specifically in theNTSsignificantly diminished E2's anorectic action, leading to increased food intake and body weight. More importantly, the stimulatory effect of E2 on apoA-IV gene expression in the NTS was significantly attenuated in SRC-1 knockdown rats. These results collectively demonstrate the critical roles of NTS SRC-1 in mediating E2's actions on food intake and apoA-IV gene expression and suggest that reduced levels of endogenous SRC-1 and apoA-IV expression are responsible for the impaired E2's anorectic action in obese females. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
38. Impact of genetic deletion of platform apolipoproteins on the size distribution of the murine lipoproteome.
- Author
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Gordon, Scott M., Li, Hailong, Zhu, Xiaoting, Tso, Patrick, Reardon, Catherine A., Shah, Amy S., Lu, L. Jason, and Davidson, W. Sean
- Subjects
- *
CARDIOVASCULAR disease prevention , *HIGH density lipoproteins , *DELETION mutation , *APOLIPOPROTEINS , *LABORATORY mice , *BLOOD proteins - Abstract
Given their association with cardiovascular disease protection, there has been intense interest in understanding the biology of high density lipoproteins (HDL). HDL is actually a family of diverse particle types, each made up of discrete - but as yet undetermined – combinations of proteins drawn from up to 95 lipophilic plasma proteins. The abundant apolipoproteins (apo) of the A class (apoA-I, apoA-II and apoA-IV) have been proposed to act as organizing platforms for auxiliary proteins, but this concept has not been systematically evaluated. We assessed the impact of genetic knock down of each platform protein on the particle size distribution of auxiliary HDL proteins. Loss of apoA-I or apoA-II massively reduced HDL lipids and changed the plasma size pattern and/or abundance of several plasma proteins. Surprisingly though, many HDL proteins were not affected, suggesting they assemble on lipid particles in the absence of apoA-I or apoA-II. In contrast, apoA-IV ablation had minor effects on plasma lipids and proteins, suggesting that it forms particles that largely exclude other apolipoproteins. Overall, the data indicate that distinct HDL subpopulations exist that do not contain, nor depend on, apoA-I, apoA-II or apoA-IV and these contribute substantially to the proteomic diversity of HDL. Biological significance Plasma levels of high density lipoproteins (HDL) are inversely correlated with cardiovascular disease. These particles are becoming known as highly heterogeneous entities that have diverse compositions and functions that may impact disease. Unfortunately, we know little about the forces that maintain the composition of each particle in plasma. It has been suggested that certain ‘scaffold’ proteins, such as apolipoprotein (apo) A-I, apoA-II and apoA-IV, may act as organizing centers for the docking of myriad accessory proteins. To test this hypothesis, we took advantage of the genetic tractability of the mouse model and ablated these three proteins individually. We then tracked the abundance and size profile of the remaining HDL proteins by gel filtration chromatography combined with mass spectrometry. The results clearly show that certain cohorts of proteins depend on each scaffold molecule to assemble normal sized HDL particles under wild-type conditions. This work forms the basis for more detailed studies that will define the specific compositions of HDL subspecies with the possibility of connecting them to specific functions or roles in disease. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
39. An Evaluation of the Crystal Structure of C-terminal Truncated Apolipoprotein A-I in Solution Reveals Structural Dynamics Related to Lipid Binding.
- Author
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Melchior, John T., Walker, Ryan G., Morris, Jamie, Jones, Martin K., Segrest, Jere P., Lima, Diogo B., Carvalho, Paulo C., Gozzo, Fábio C., Castleberry, Mark, Thompson, Thomas B., and Davidson, W. Sean
- Subjects
- *
CRYSTAL structure , *APOLIPOPROTEIN A , *CHEMICAL structure , *LIPID analysis , *X-ray scattering - Abstract
Apolipoprotein (apo) A-I mediates many of the anti-atherogenic functions attributed to high density lipoprotein. Unfortunately, efforts toward a high resolution structure of fulllength apoA-I have not been fruitful, although there have been successes with deletion mutants. Recently, a C-terminal truncation (apoA-IΔ185-243) was crystallized as a dimer. The structure showed two helical bundles connected by a long, curved pair of swapped helical domains. To compare this structure to that existing under solution conditions, we applied small angle x-ray scattering and isotope-assisted chemical cross-linking to apoAIΔ185-243 in its dimeric and monomeric forms. For the dimer, we found evidence for the shared domains and aspects of the N-terminal bundles, but not the molecular curvature seen in the crystal. We also found that the N-terminal bundles equilibrate between open and closed states. Interestingly, this movement is one of the transitions proposed during lipid binding. The monomer was consistent with a model in which the long shared helix doubles back onto the helical bundle. Combined with the crystal structure, these data offer an important starting point to understand the molecular details of high density lipoprotein biogenesis. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
40. Red Blood Cell Dysfunction Induced by High-Fat Diet: Potential Implications for Obesity-Related Atherosclerosis.
- Author
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Unruh, Dusten, Srinivasan, Ramprasad, Benson, Tyler, Haigh, Stephen, Coyle, Danielle, Batra, Neil, Keil, Ryan, Sturm, Robert, Blanco, Victor, Palascak, Mary, Franco, Robert S., Tong, Wilson, Chatterjee, Tapan, Hui, David Y., Davidson, W. Sean, Aronow, Bruce J., Kalfa, Theodosia, Manka, David, Peairs, Abigail, and Blomkalns, Andra
- Subjects
- *
ERYTHROCYTE disorders , *HIGH-fat diet , *ATHEROSCLEROSIS , *OBESITY , *LEUCOCYTES , *CHEMOKINES , *ANTIGEN receptors , *MONOCYTES , *MACROPHAGES , *ERYTHROCYTE metabolism , *ERYTHROCYTES , *ANIMAL experimentation , *ANIMALS , *DIET , *MICE , *PHAGOCYTOSIS , *RESEARCH funding , *PHYSIOLOGY - Abstract
Background: High-fat diet (HFD) promotes endothelial dysfunction and proinflammatory monocyte activation, which contribute to atherosclerosis in obesity. We investigated whether HFD also induces the dysfunction of red blood cells (RBCs), which serve as a reservoir for chemokines via binding to Duffy antigen receptor for chemokines (DARC).Methods and Results: A 60% HFD for 12 weeks, which produced only minor changes in lipid profile in C57/BL6 mice, markedly augmented the levels of monocyte chemoattractant protein-1 bound to RBCs, which in turn stimulated macrophage migration through an endothelial monolayer. Levels of RBC-bound KC were also increased by HFD. These effects of HFD were abolished in DARC(-/-) mice. In RBCs from HFD-fed wild-type and DARC(-/-) mice, levels of membrane cholesterol and phosphatidylserine externalization were increased, fostering RBC-macrophage inflammatory interactions and promoting macrophage phagocytosis in vitro. When labeled ex vivo and injected into wild-type mice, RBCs from HFD-fed mice exhibited ≈3-fold increase in splenic uptake. Finally, RBCs from HFD-fed mice induced increased macrophage adhesion to the endothelium when they were incubated with isolated aortic segments, indicating endothelial activation.Conclusions: RBC dysfunction, analogous to endothelial dysfunction, occurs early during diet-induced obesity and may serve as a mediator of atherosclerosis. These findings may have implications for the pathogenesis of atherosclerosis in obesity, a worldwide epidemic. [ABSTRACT FROM AUTHOR]- Published
- 2015
- Full Text
- View/download PDF
41. Interaction of ApoA-IV with NR4A1 and NR1D1 Represses G6Pase and PEPCK Transcription: Nuclear Receptor-Mediated Downregulation of Hepatic Gluconeogenesis in Mice and a Human Hepatocyte Cell Line.
- Author
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Li, Xiaoming, Xu, Min, Wang, Fei, Ji, Yong, DavidsoN, W. Sean, Li, Zongfang, and Tso, Patrick
- Subjects
- *
TRANSCRIPTION factors , *NUCLEAR receptors (Biochemistry) , *GLUCONEOGENESIS , *LIVER cells , *LABORATORY mice , *COFACTORS (Biochemistry) - Abstract
We have previously shown that the nuclear receptor, NR1D1, is a cofactor in ApoA-IV-mediated downregulation of gluconeogenesis. Nuclear receptor, NR4A1, is involved in the transcriptional regulation of various genes involved in inflammation, apoptosis, and glucose metabolism. We investigated whether NR4A1 influences the effect of ApoA-IV on hepatic glucose metabolism. Our in situ proximity ligation assays and coimmunoprecipitation experiments indicated that ApoA-IV colocalized with NR4A1 in human liver (HepG2) and kidney (HEK-293) cell lines. The chromatin immunoprecipitation experiments and luciferase reporter assays indicated that the ApoA-IV and NR4A1 colocalized at the RORα response element of the human G6Pase promoter, reducing its transcriptional activity. Our RNA interference experiments showed that knocking down the expression of NR4A1 in primary mouse hepatocytes treated with ApoA-IV increased the expression of NR1D1, G6Pase, and PEPCK, and that knocking down NR1D1 expression increased the level of NR4A1. We also found that ApoA-IV induced the expression of endogenous NR4A1 in both cultured primary mouse hepatocytes and in the mouse liver, and decreased glucose production in primary mouse hepatocytes. Our findings showed that ApoA-IV colocalizes with NR4A1, which suppresses G6Pase and PEPCK gene expression at the transcriptional level, reducing hepatic glucose output and lowering blood glucose. The ApoA-IV-induced increase in NR4A1 expression in hepatocytes mediates further repression of gluconeogenesis. Our findings suggest that NR1D1 and NR4A1 serve similar or complementary functions in the ApoA-IV-mediated regulation of gluconeogenesis. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
42. Role of Conserved Proline Residues in Human Apolipoprotein A-IV Structure and Function.
- Author
-
Xiaodi Deng, Walker, Ryan G., Morris, Jamie, Davidson, W. Sean, and Thompson, Thomas B.
- Subjects
- *
APOLIPOPROTEIN A , *PROLINE , *ALANINE , *THERMODYNAMICS research , *X-ray scattering , *CROSSLINKING (Polymerization) - Abstract
Apolipoprotein (apo)A-IV is a lipid emulsifying protein linked to a range of protective roles in obesity, diabetes, and cardiovascular disease. It exists in several states in plasma including lipid-bound in HDL and chylomicrons and as monomeric and dimeric lipid-free/poor forms. Our recent x-ray crystal structure of the central domain of apoA-IV shows that it adopts an elongated helical structure that dimerizes via two long reciprocating helices. A striking feature is the alignment of conserved proline residues across the dimer interface. We speculated that this plays important roles in the structure of the lipidfree protein and its ability to bind lipid. Here we show that the systematic conversion of these prolines to alanine increased the thermodynamic stability of apoA-IV and its propensity to oligomerize. Despite the structural stabilization, we noted an increase in the ability to bind and reorganize lipids and to promote cholesterol efflux from cells. The novel properties of these mutants allowed us to isolate the first trimeric form of an exchangeable apolipoprotein and characterize it by small-angle x-ray scattering and chemical cross-linking. The results suggest that the reciprocating helix interaction is a common feature of all apoA-IV oligomers. We propose a model of how self-association of apoA-IV can result in spherical lipoprotein particles, a model that may have broader applications to other exchangeable apolipoprotein family members. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
43. Evidence for multiple sex-determining loci in Tasmanian Atlantic salmon (Salmo salar).
- Author
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Eisbrenner, W D, Botwright, N, Cook, M, Davidson, E A, Dominik, S, Elliott, N G, Henshall, J, Jones, S L, Kube, P D, Lubieniecki, K P, Peng, S, and Davidson, W S
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ATLANTIC salmon , *SEXING of fish , *GENE mapping , *MICROSATELLITE repeats , *GENETIC markers , *FISHES - Abstract
Phenotypic sex in salmonids is determined primarily by a genetic male heterogametic system; yet, sex reversal can be accomplished via hormonal treatment. In Tasmanian Atlantic salmon aquaculture, to overcome problems associated with early sexual maturation in males, sex-reversed females are crossed with normal females to produce all female stock. However, phenotypic distinction of sex-reversed females (neo-males) from true males is problematic. We set out to identify genetic markers that could make this distinction. Microsatellite markers from chromosome 2 (Ssa02), to which the sex-determining locus (SEX) has been mapped in two Scottish Atlantic salmon families, did not predict sex in a pilot study of seven families. A TaqMan 64 SNP genome-wide scan suggested SEX was on Ssa06 in these families, and this was confirmed by microsatellite markers. A survey of 58 families in total representing 38 male lineages in the SALTAS breeding program found that 34 of the families had SEX on Ssa02, in 22 of the families SEX was on Ssa06, and two of the families had a third SEX locus, on Ssa03. A PCR test using primers designed from the recently published sdY gene is consistent with Tasmanian Atlantic salmon having a single sex-determining gene that may be located on at least three linkage groups. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
44. The Structure of Human Apolipoprotein A-IV as Revealed by Stable Isotope-assisted Cross-linking, Molecular Dynamics, and Small Angle X-ray Scattering.
- Author
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Walker, Ryan G., Xiaodi Deng, Melchior, John T., Morris, Jamie, Tso, Patrick, Jones, Martin K., Segrest, Jere P., Thompson, Thomas B., and Davidson, W. Sean
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APOLIPOPROTEIN A , *STABLE isotopes , *PROTEIN crosslinking , *GLUCOSE metabolism , *X-ray crystallography - Abstract
Apolipoprotein (apo)A-IV plays important roles in dietary lipid and glucose metabolism, and knowledge of its structure is required to fully understand the molecular basis of these functions. However, typical of the entire class of exchangeable apolipoproteins, its dynamic nature and affinity for lipid has posed challenges to traditional high resolution structural approaches. We previously reported an x-ray crystal structure of a dimeric truncation mutant of apoA-IV, which showed a unique helix-swapping molecular interface. Unfortunately, the structures of the N and C termini that are important for lipid binding were not visualized. To build a more complete model, we used chemical cross-linking to derive distance constraints across the full-length protein. The approach was enhanced with stable isotope labeling to overcome ambiguities in determining molecular span of the cross-links given the remarkable similarities in the monomeric and dimeric apoA-IV structures. Using 51 distance constraints, we created a starting model for full-length monomeric apoA-IV and then subjected it to two modeling approaches: (i) molecular dynamics simulations and (ii) fitting to small angle x-ray scattering data. This resulted in the most detailed models yet for lipid-free monomeric or dimeric apo A-IV. Importantly, these models were of sufficient detail to direct the experimental identification of new functional residues that participate in a "clasp" mechanism to modulate apoA-IV lipid affinity. The isotope-assisted cross-linking approach should prove useful for further study of this family of apolipoproteins in both the lipid-free and -bound states. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
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45. Apolipoprotein A-IV Reduces Hepatic Gluconeogenesis through Nuclear Receptor NR1D1.
- Author
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Xiaoming Li, Min Xu, Fei Wang, Kohan, Alison B., Haas, Michael K., Qing Yang, Danwen Lou, Obici, Silvana, Davidson, W. Sean, and Tso, Patrick
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APOLIPOPROTEIN A , *GLUCOSE metabolism , *REGULATION of gluconeogenesis , *GENE expression in mammals , *LIVER cells , *PYRUVATE kinase , *CARRIER proteins , *SMALL interfering RNA - Abstract
We showed recently that apoA-IV improves glucose homeosta- sis by enhancing pancreatic insulin secretion in the presence of elevated levels of glucose. Therefore, examined whether apolipo- proteinA-IV(apoA-IV) also regulates glucosemetabolismthrough the suppression of hepatic gluconeogenesis.The ability of apoA-IV to lower gluconeogenic gene expression and glucose production/ was measured in apoA-IV and wild-type mice and primary mouse hepatocytes. The transcriptional regulation of Glc-6-Pase and phosphoenolpyruvate carboxykinase (PEPCK) by apoA-IV-/- was determined by luciferase activity assay. Using bacterial two-hybrid library screening,NR1D1was identified as a putative apoA-IV-binding protein. The colocalization and interaction between apoA-IV and NR1D1 were confirmed by immunofluorescence, in situ proximity ligation assay, and coimmunoprecipitation. Enhanced recruitment of NR1D1 and activity by apoA-IV to Glc- 6-Pase promoter was verified with ChIP and a luciferase assay. Down-regulation of apoA-IV on gluconeogenic genes is mediated through NR1D1, as illustrated in cells with NR1D1 knockdown by siRNA. We found that apoA-IV suppresses the expression of PEPCK and Glc-6-Pase in hepatocytes; decreases hepatic glucose production; binds and activates nuclear receptorNR1D1 and stimulates NR1D1 expression; in cells lacking NR1D1, fails to inhibit PEPCK and Glc-6-Pase gene expression; and stimulates higher hepatic glucose production and higher gluconeogenic gene expression in apoA-IV-/- mice. We conclude that apoA-IV inhibits hepatic gluconeogenesis by decreasing Glc-6-Pase and PEPCK gene expression through NR1D1. This novel regulatory pathway connects an influx of energy as fat from the gut (and subsequent apoA-IV secretion) with inhibition of hepatic glucose production. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
46. Surveillance of Parapoxvirus Among Ruminants in Virginia and Connecticut.
- Author
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Roess, A. A., McCollum, A. M., Gruszynski, K., Zhao, H., Davidson, W., Lafon, N., Engelmeyer, T., Moyer, B., Godfrey, C., Kilpatrick, H., Labonte, A., Murphy, J., Carroll, D. S., Li, Y., and Damon, I. K.
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DISEASE prevalence , *VIRUS disease transmission , *DEER hunters , *VETERINARY virology , *RUMINANTS as laboratory animals - Abstract
In 2008, two deer hunters in Virginia and Connecticut were infected with a unique strain of pseudocowpox virus, a parapoxvirus. To estimate the prevalence of this virus, and in an attempt to define the reservoir, Parapoxvirus surveillance was undertaken between November 2009 and January 2010. 125 samples from four ruminant species (cows, goat, sheep and white-tailed deer) were collected in Virginia, and nine samples from white-tailed deer were collected in Connecticut. We found no evidence that the parapoxvirus species that infected the deer hunters is circulating among domesticated ruminants or white-tailed deer. However, parapoxvirus DNA of a different parapoxvirus species, bovine papular stomatitis virus ( BPSV), was detected in 31 samples obtained from asymptomatic cattle in Virginia. Parapoxvirus DNA-positive cattle originated from the same counties indicating probable transmission among animals. Molecular analysis identified BPSV as the parapoxvirus affecting animals. Asymptomatic parapoxvirus infections in livestock, particularly young animals, may be common, and further investigation will inform our knowledge of virus transmission. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
47. Novel Poxvirus in Big Brown Bats, Northwestern United States.
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Emerson, G. L., Nordhausen, R., Garner, M. M., Huckabee, J. R., Johnson, S., Wohrle, R. D., Davidson, W. B., Wilkins, K., Y. Li, Doty, J. B., Gallardo-Romero, N. F., Metcalfe, M. G., Karem, K. L., Damon, I. K., and Carroll, D. S.
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BATS , *POXVIRUS diseases , *ELECTRON microscopy , *PHYLOGENY , *OSTEOMYELITIS - Abstract
A wildlife hospital and rehabilitation center in the northwestern United States received several big brown bats (Eptesicus fuscus) with necrosuppurative osteomyelitis in multiple joints. Wing and joint tissues were positive by PCR for poxvirus. Thin-section electron microscopy showed poxvirus particles within A-type inclusions. Phylogenetic comparison supports establishment of a new genus of Poxviridae. [ABSTRACT FROM AUTHOR]
- Published
- 2013
48. Using a wiki platform to promote guidelines internationally and maintain their currency: evidence-based guidelines for the nutritional management of adult patients with head and neck cancer.
- Author
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Brown, T., Findlay, M., Dincklage, J., Davidson, W., Hill, J., Isenring, E., Talwar, B., Bell, K., Kiss, N., Kurmis, R., Loeliger, J., Sandison, A., Taylor, K., and Bauer, J.
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DIFFUSION of innovations , *HEAD tumors , *NECK tumors , *APPLICATION software , *CINAHL database , *DIET therapy , *DIETITIANS , *EXPERTISE , *HEALTH care teams , *INFORMATION storage & retrieval systems , *MEDICAL databases , *MEDICAL information storage & retrieval systems , *INTERPROFESSIONAL relations , *MEDICAL personnel , *MEDICAL protocols , *MEDLINE , *RESEARCH funding , *WORLD Wide Web , *SYSTEMATIC reviews , *EVIDENCE-based medicine , *PROFESSIONAL practice , *DESCRIPTIVE statistics , *TUMOR treatment - Abstract
Background The present study describes the development of evidence-based practice guidelines for the nutritional management of adult patients with head and neck cancer using a wiki platform to enable wide international stakeholder consultation and maintain currency. Methods A dietitian steering committee and a multidisciplinary steering committee were established for consultation. Traditional methods of evidence-based guideline development were utilised to perform the literature review, assess the evidence and produce a draft document. This was transferred to a wiki platform for stakeholder consultation and international endorsement processes in Australia, New Zealand and the UK. Data were collected on website traffic utilising Google Analytics. Results In addition to broad stakeholder consultation through the steering committees, an additional twenty comments were received via the wiki by twelve individuals covering six different professions from three different countries, compared to four comments by e-mail. The guidelines were subsequently endorsed by the dietetic associations of Australia, New Zealand and the UK. During a 4-month period monitoring the use of the guidelines, there were 2303 page views to the landing page from 33 countries. The average number of pages accessed per visit was five and the duration of time spent on the website was approximately 6 min. Conclusions Using a wiki platform for guideline development and dissemination is a successful method for producing high-quality resources that can undergo wide international stakeholder review and include open public consultation. This can replace conventional methods whereby guidelines can quickly become outdated. [ABSTRACT FROM AUTHOR]
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- 2013
- Full Text
- View/download PDF
49. Assessing footprints of selection in commercial Atlantic salmon populations using microsatellite data.
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Martinez, V., Dettleff, P., Lopez, P., Fernandez, G., Jedlicki, A., Yañez, J. M., and Davidson, W. S.
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FOOTPRINTS , *SALMON , *MICROSATELLITE repeats , *POPULATION , *GENOMES , *CHROMOSOMES - Abstract
Relatively large rates of response to traits of economic importance have been observed in different selection experiments in salmon. Several QTL have been mapped in the salmon genome, explaining unprecedented levels of phenotypic variation. Owing to the relatively large selection intensity, individual loci may be indirectly selected, leaving molecular footprints of selection, together with increased inbreeding, as its likely relatives will share the selected loci. We used population differentiation and levels of linkage disequilibrium in chromosomes known to be harbouring QTL for body weight, infectious pancreatic necrosis resistance and infectious salmon anaemia resistance to assess the recent selection history at the genomic level in Atlantic salmon. The results clearly suggest that the marker SSA0343BSFU on chromosome 3 (body weight QTL) showed strong evidence of directional selection. It is intriguing that this marker is physically mapped to a region near the coding sequence of DVL2 , making it an ideal candidate gene to explain the rapid evolutionary response of this chromosome to selection for growth in Salmo salar. Weak evidence of diversifying selection was observed in the QTL associated with infectious pancreatic necrosis and infectious salmon anaemia resistance. Overall, this study showed that artificial selection has produced important changes in the Atlantic salmon genome, validating QTL in commercial salmon populations used for production purposes according to the recent selection history. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
50. Secreted Progranulin Is a Homodimer and Is Not a Component of High Density Lipoproteins (HDL).
- Author
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Nguyen, Andrew D., Nguyen, Thi A., Cenik, Basar, Yu, Gang, Herz, Joachim, Walther, Tobias C., Davidson, W. Sean, and Farese Jr., Robert V.
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PROGRANULIN , *GLYCOPROTEINS , *GENE regulatory networks , *HIGH density lipoproteins , *GEL permeation chromatography - Abstract
Progranulin is a secreted glycoprotein, and the GRN gene is mutated in some cases of frontotemporal dementia. Progranulin has also been implicated in cell growth, wound healing, inflammation, and cancer. We investigated the molecular nature of secreted progranulin and provide evidence that progranulin exists as a homodimer. Although recombinant progranulin has a molecular mass of ∼85 kDa by SDS-PAGE, it elutes in fractions corresponding to ∼170-180 kDa by gel-filtration chromatography. Additionally, recombinant progranulin can be intermolecularly cross-linked, yielding a complex corresponding to a dimer (∼180 kDa), and progranulins containing different epitope tags physically interact. In plasma, progranulin similarly forms complexes of ∼180-190 kDa. Although progranulin partially co-fractionated with high density lipoproteins (HDL) by gel-filtration chromatography, we found no evidence that progranulin in mouse or human plasma is a component of HDLeither by ultracentrifugation or by lipid binding assays. We conclude that circulating progranulin exists as a dimer and is not likely a component of HDL. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
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