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Context. Observational and theoretical evidence suggest that beams of accelerated particles are produced in flaring events of all sizes in the solar atmosphere, from X-class flares to nanoflares. Current models of these types of particles in flaring loops assume an isolated 1D atmosphere. Aims. A more realistic environment for modelling accelerated particles can be provided by 3D radiative magnetohydrodynamics codes. Here, we present a simple model for particle acceleration and propagation in the context of a 3D simulation of the quiet solar atmosphere, spanning from the convection zone to the corona. We then examine the additional transport of energy introduced by the particle beams. Methods. The locations of particle acceleration associated with magnetic reconnection were identified by detecting changes in magnetic topology. At each location, the parameters of the accelerated particle distribution were estimated from local conditions. The particle distributions were then propagated along the magnetic field, and the energy deposition due to Coulomb collisions with the ambient plasma was computed. Results. We find that particle beams originate in extended acceleration regions that are distributed across the corona. Upon reaching the transition region, they converge and produce strands of intense heating that penetrate the chromosphere. Within these strands, beam heating consistently dominates conductive heating below the bottom of the transition region. This indicates that particle beams qualitatively alter the energy transport even outside of active regions. [ABSTRACT FROM AUTHOR]

The dynamic timescales in the solar atmosphere are shorter than the ionization and recombination times of many ions used for line ratio diagnostics of the transition region and corona. The long ionization and recombination times for these ions imply that they can be found far from their equilibrium temperatures, and spectroscopic investigations require more care before being trusted in giving correct information on local quantities, such as density and temperature. By solving the full time-dependent rate equations for an oxygen model atom in the three-dimensional numerical model of the solar atmosphere generated by the Bifrost code, we are able to construct synthetic intensity maps and study the emergent emission. We investigate the method of electron density diagnostics through line ratio analysis of the Oiv 140.1 nm to the 140.4 nm ratio, the assumptions made in carrying out the diagnostics, and the different interpretations of the electron density. The results show big discrepancies between emission in statistical equilibrium and emission where non-equilibrium (NEQ) ionization is treated. Deduced electron densities are up to an order of magnitude higher when NEQ effects are accounted for. The inferred electron density is found to be a weighted mean average electron density along the line of sight and has no relation to the temperature of emission. This study shows that numerical modeling is essential for electron density diagnostics and is a valuable tool when the ions used for such studies are expected to be out of ionization equilibrium. Though this study has been performed on the Oiv ion, similar results are also expected for other transition region ions. [ABSTRACT FROM AUTHOR]

Context. The measured average velocities in solar and stellar spectral lines formed at transition region temperatures have been difficult to interpret. The dominant redshifts observed in the lower transition region naturally leads to the question of how the upper layers of the solar (and stellar) atmosphere can be maintained. Likewise, no ready explanation has been made for the average blueshifts often found in upper transition region lines. However, realistic three-dimensional radiation magnetohydrodynamics (3D rMHD) models of the solar atmosphere are able to reproduce the observed dominant line shifts and may thus hold the key to resolve these issues. Aims. These new 3D rMHD simulations aim to shed light on how mass flows between the chromosphere and corona and on how the coronal mass is maintained. These simulations give new insights into the coupling of various atmospheric layers and the origin of Doppler shifts in the solar transition region and corona. Methods. The passive tracer particles, so-called corks, allow the tracking of parcels of plasma over time and thus the study of changes in plasma temperature and velocity not only locally, but also in a co-moving frame. By following the trajectories of the corks, we can investigate mass and energy flows and understand the composition of the observed velocities. Results. Our findings show that most of the transition region mass is cooling. The preponderance of transition region redshifts in the model can be explained by the higher percentage of downflowing mass in the lower and middle transition region. The average upflows in the upper transition region can be explained by a combination of both stronger upflows than downflows and a higher percentage of upflowing mass. The most common combination at lower and middle transition region temperatures are corks that are cooling and traveling downward. For these corks, a strong correlation between the pressure gradient along the magnetic field line and the velocity along the magnetic field line has been observed, indicating a formation mechanism that is related to downward propagating pressure disturbances. Corks at upper transition region temperatures are subject to a rather slow and highly variable but continuous heating process. Conclusions. Corks are shown to be an essential tool in 3D rMHD models in order to study mass and energy flows. We have shown that most transition region plasma is cooling after having been heated slowly to upper transition region temperatures several minutes before. Downward propagating pressure disturbances are identified as one of the main mechanisms responsible for the observed redshifts at transition region temperatures. [ABSTRACT FROM AUTHOR]

The structure and dynamics of the outer solar atmosphere are reviewed with emphasis on the role played by the magnetic field. Contemporary observations that focus on high resolution imaging over a range of temperatures, as well as UV, EUV and hard X-ray spectroscopy, demonstrate the presence of a vast range of temporal and spatial scales, mass motions, and particle energies present. By focusing on recent developments in the chromosphere, corona and solar wind, it is shown that small scale processes, in particular magnetic reconnection, play a central role in determining the large-scale structure and properties of all regions. This coupling of scales is central to understanding the atmosphere, yet poses formidable challenges for theoretical models. [ABSTRACT FROM AUTHOR]