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The soils of the Maritime and sub‐Antarctic experience extreme environmental conditions but nonetheless host biological communities that can survive low temperatures, limited water availability and short day lengths or even the complete absence of solar radiation during the winter. We determined the soil organic carbon (SOC) and total nitrogen (N), soil microbial biomass (SMB), labile carbon (LC) and respiration rate (RR) in soil samples from the longest latitudinal transect (approximately 2,000 km) ever sampled exclusively in the Maritime and sub‐Antarctic, comprising 69 sites located between South Georgia (54°S) and south‐eastern Alexander Island (72°S). With the exception of the most northerly location (South Georgia), the greatest SMB values occurred at 67–68°S, despite the harsh environmental conditions. This is consistent with the relative nutrient richness of the soils at these latitudes, as indicated by large SOC and total soil N concentrations, which are in turn probably linked to more abundant guano and excreta deposition by sea birds and seals, which have fewer and smaller areas of ice‐free terrain to land or haul out on further south. South of 68°S, SOC values declined with increasing latitude, which is probably due to increasingly extreme environmental conditions. We also found that the SOC and SMB values, the proportion of SOC considered labile (LC/SOC) and the carbon mineralization rates expressed as either RR/SOC or RR/SMB were all small compared with values from less extreme temperate and tropical regions. However, the proportion of the SOC in the microbial biomass (SMB/SOC) was substantially greater than that reported for non‐polar soils. We conclude that although the soils of the Maritime and sub‐Antarctic have small and relatively inactive microbial communities, they are characterized by efficient conversion of organic resources into microbial biomass and large affinities for added substrates. Highlights: Soil carbon parameters are reported from sites along the longest latitudinal transect in Antarctica ever sampled.The soil microbial biomass tended to peak at 67–68°S, coinciding with relative SOC and N abundance in the soil, probably arising from guano and excreta from sea birds and mammals.The soil microbial community was small but highly efficient at converting organic resources into microbial biomass, as indicated by large microbial biomass/soil organic carbon ratios. [ABSTRACT FROM AUTHOR]

Mechanisms to mitigate global climate change by sequestering carbon ( C) in different 'sinks' have been proposed as at least temporary measures. Of the major global C pools, terrestrial ecosystems hold the potential to capture and store substantially increased volumes of C in soil organic matter ( SOM) through changes in management that are also of benefit to the multitude of ecosystem services that soils provide. This potential can only be realized by determining the amount of SOM stored in soils now, with subsequent quantification of how this is affected by management strategies intended to increase SOM concentrations, and used in soil C models for the prediction of the roles of soils in future climate change. An apparently obvious method to increase C stocks in soils is to augment the soil C pools with the longest mean residence times ( MRT). Computer simulation models of soil C dynamics, e.g. RothC and Century, partition these refractory constituents into slow and passive pools with MRTs of centuries to millennia. This partitioning is assumed to reflect: (i) the average biomolecular properties of SOM in the pools with reference to their source in plant litter, (ii) the accessibility of the SOM to decomposer organisms or catalytic enzymes, or (iii) constraints imposed on decomposition by environmental conditions, including soil moisture and temperature. However, contemporary analytical approaches suggest that the chemical composition of these pools is not necessarily predictable because, despite considerable progress with understanding decomposition processes and the role of decomposer organisms, along with refinements in simulation models, little progress has been made in reconciling biochemical properties with the kinetically defined pools. In this review, we will explore how advances in quantitative analytical techniques have redefined the new understanding of SOM dynamics and how this is affecting the development and application of new modelling approaches to soil C. [ABSTRACT FROM AUTHOR]

Abstract: Global warming in the Arctic may alter decomposition rates in Arctic soils and therefore nutrient availability. In addition, changes in the length of the growing season may increase plant productivity and the rate of labile C input below ground. We carried out an experiment in which inorganic nutrients (NH4NO3 and NaPO4) and organic substrates (glucose and glycine) were added to soils sampled from across the mountain birch forest-tundra heath ecotone in northern Sweden (organic and mineral soils from the forest, and organic soil only from the heath). Carbon dioxide production was then monitored continuously over the following 19 days. Neither inorganic N nor P additions substantially affected soil respiration rates when added separately. However, combined N and P additions stimulated microbial activity, with the response being greatest in the birch forest mineral soil (57% increase in CO2 production compared with 26% in the heath soil and 8% in the birch forest organic soil). Therefore, mineralisation rates in these soils may be stimulated if the overall nutrient availability to microbes increases in response to global change, but N deposition alone is unlikely to enhance decomposition. Adding either, or both, glucose and glycine increased microbial respiration. Isotopic separation indicated that the mineralisation of native soil organic matter (SOM) was stimulated by glucose addition in the heath soil and the forest mineral soil, but not in the forest organic soil. These positive ‘priming’ effects were lost following N addition in forest mineral soil, and following both N and P additions in the heath soil. In order to meet enhanced microbial nutrient demand, increased inputs of labile C from plants could stimulate the mineralisation of SOM, with the soil C stocks in the tundra-heath potentially most vulnerable. [Copyright &y& Elsevier]

Warming-induced release of CO2 from the large carbon (C) stores in arctic soils could accelerate climate change. However, declines in the response of soil respiration to warming in long-term experiments suggest that microbial activity acclimates to temperature, greatly reducing the potential for enhanced C losses. As reduced respiration rates with time could be equally caused by substrate depletion, evidence for thermal acclimation remains controversial. To overcome this problem, we carried out a cooling experiment with soils from arctic Sweden. If acclimation causes the reduction in soil respiration observed after experimental warming, then it should subsequently lead to an increase in respiration rates after cooling. We demonstrate that thermal acclimation did not occur following cooling. Rather, during the 90 days after cooling, a further reduction in the soil respiration rate was observed, which was only reversed by extended re-exposure to warmer temperatures. We conclude that over the time scale of a few weeks to months, warming-induced changes in the microbial community in arctic soils will amplify the instantaneous increase in the rates of CO2 production and thus enhance C losses potentially accelerating the rate of 21st century climate change. [ABSTRACT FROM AUTHOR]

β-Glucosidase is involved in the degradation of cellulose in soils and has potential for monitoring biological soil quality. We assayed β-glucosidase activity in 29 permanent grassland soils from England and Wales with contrasting physico-chemical and biological properties (clay content 22–68%; total carbon 29–80 mg g−1; microbial carbon 412–3412 μg g−1). Substrate induced β-glucosidase activity ranged between 1.12 and 6.12 μmol para-nitrophenol g−1 soil h−1 and was positively correlated with concentrations of clay, total carbon and microbial carbon. This suggests that substrate-induced β-glucosidase activity is an integrative measure of physico-chemical and biological soil properties and may have applications in monitoring biological soil quality. [Copyright &y& Elsevier]

A letter to the editor is presented in response to correspondence on biotechnological potential and the environmental risks of releasing transgenic trees that was published in the past issues.

Bradford et al. (2008) conclude that thermal adaptation will reduce the response of soil microbial respiration to rising global temperatures. However, we question both the methods used to calculate mass-specific respiration rates and the interpretation of the results. No clear evidence of thermal adaptation reducing soil microbial activity was produced. [ABSTRACT FROM AUTHOR]

Abstract: Radiocarbon analysis of soil CO2 can provide information on the age, source and turnover rate of soil organic C. We developed a new method for passively trapping respired CO2 on molecular sieve, allowing it to be returned to the laboratory and recovered for C isotope analysis. We tested the method on a soil at a grassland site, and using a synthetic soil created to provide a contrasting isotopic signature. As with other passive sampling techniques, a small amount of fractionation of the 13C isotope occurs during sampling, which we have quantified, otherwise the results show that the molecular sieve traps a sufficiently large and representative sample of CO2 for C isotope analysis. Since 14C results are routinely corrected for mass-dependent fractionation, our results show that passive sampling of soil respiration using molecular sieve offers a reliable method to collect soil-respired CO2 for 14C analysis. [Copyright &y& Elsevier]

Respiratory denitrification is controlled by a number of environmental and soil factors including pH, but some of the interactions between pH and denitrification in soil are still uncertain. The objective of the present study was to assess the relationship between natural soil pH and denitrifying enzyme activity (DEA), to investigate the impact of two different techniques used for determining of potential denitrification, namely short-term DEA and the long-term denitrification potential (DP), on resulting pH optimum, especially with respect to the length of measurement, and to elucidate the effect of soil pH on the nature of denitrification products (N2O, N2). For this purpose, five mineral soils similar in a texture but differing in pH, were investigated. In addition to examining the soils in their natural pH values, pHs were adjusted by amendment of sulphuric acid or sodium hydroxide solutions prior to DEA or DP determination. The study showed that there was no simple relationship between DEA and soil pH, as very high DEA was found both in acid and alkaline soil. The study also indicated that the populations of soil denitrifiers were adapted to prevailing natural soil pH in the sense that they exhibited the highest DEA at or near natural soil pH (in experiments where the pH was adjusted to values from about 4 to 11 before DEA determination). Suppression of nitrate reductase activity by introducing nitrite instead of nitrate as an electron acceptor had no effect on this interaction between the DEA and soil pH. If the soil incubation was prolonged under optimum conditions for denitrification (surplus of nitrate or nitrite and available carbon, very low partial pressure of O2) and DP was estimated, the optimum pH for evolution of denitrification products was shifted towards neutrality. It is proposed that this is either due to the development of a community of denitrifiers which can grow better at the neutral pH or due to accommodation of the existing populations to new conditions. The shift in pH optimum occurred after about 12 h, but it took about 1–2 days to fully appear. In agreement with previous studies, it was confirmed that at pH above 7, N2 is much more important denitrification product than N2O. The study also suggests that the expressions like optimum pH for denitrification should be avoided, as different denitrification characteristics obtained using different methodology can be quite differently related to the soil reaction. Such general expression should be specified by introducing the particular denitrification parameters to which it is being applied. [Copyright &y& Elsevier]

Temperatures approaching or exceeding 20°C have been measured during summer in polar regions at the surfaces of barren fellfield soils under cloudless skies around solar noon. However, despite the upper temperature limit for the growth of cold‐adapted microbes—which are abundant in polar soils and have pivotal roles in nutrient cycling—typically being close to this temperature, previous studies have not addressed the consequences of climate change for the metabolism of these organisms in the natural environment. Here in a 5‐year field experiment on Alexander Island in the southern maritime Antarctic, we show that the abundance of Pseudogymnoascus roseus, the most widespread decomposer fungus in maritime Antarctic fellfield soils, is reduced by 1–2 orders of magnitude when irrigated and nutrient‐amended soils are warmed to >20°C during summer. Laboratory experiments under conditions mimicking those during midsummer in the natural environment indicated that the hyphal extension rates of P. roseus isolates and the activities of five extracellular enzymes are reduced by 54%–96% at high water availability after exposure to temperatures cycling daily from 2 to 21°C and 2 to 24°C, relative to temperatures cycling from 2 to 18°C. Given that the temperatures of surface soils at the study site already reach 19°C during midsummer, the observations reported here suggest that, at predicted rates of warming arising from moderate greenhouse gas emissions, inhibitory effects of climate change on the metabolism of P. roseus could manifest themselves within the next few decades. Furthermore, with peak temperatures at the surfaces of fellfield soils at other maritime Antarctic locations and in High Arctic and alpine regions already exceeding 20°C during summer, the observations suggest that climate warming has the potential to inhibit the growth of other cold‐adapted microbes, with negative effects on soils as the Earth's climate continues to warm. [ABSTRACT FROM AUTHOR]

In contrast to the situation in plants inhabiting most of the world's ecosystems, mycorrhizal fungi are usually absent from roots of the only two native vascular plant species of maritime Antarctica, Deschampsia antarctica and Colobanthus quitensis. Instead, a range of ascomycete fungi, termed dark septate endophytes (DSEs), frequently colonise the roots of these plant species. We demonstrate that colonisation of Antarctic vascular plants by DSEs facilitates not only the acquisition of organic nitrogen as early protein breakdown products, but also as non‐proteinaceous d‐amino acids and their short peptides, accumulated in slowly‐decomposing organic matter, such as moss peat. Our findings suggest that, in a warming maritime Antarctic, this symbiosis has a key role in accelerating the replacement of formerly dominant moss communities by vascular plants, and in increasing the rate at which ancient carbon stores laid down as moss peat over centuries or millennia are returned to the atmosphere as CO2. [ABSTRACT FROM AUTHOR]

A resumption of climate warming in maritime Antarctica, arising from continued greenhouse gas emissions to the atmosphere, is predicted to lead to further expansions of plant populations across the region, with consequent increases in nutrient inputs to soils. Here, we test the main and interactive effects of warming, applied with open top chambers (OTCs), and nutrient amendment with tryptic soy broth (TSB), an artificial growth substrate, on bacterial community composition and diversity using Illumina sequencing of 16S rRNA genes in soil from a field experiment in the southern maritime Antarctic. Substantial effects of TSB application on bacterial communities were identified after 49 months, including reduced diversity, altered phylogenetic community assembly processes, increased Proteobacteria-to-Acidobacteria ratios and significant divergence in community composition, notably increases in the relative abundances of the gram-positive genera Arthrobacter, Paeniglutamicibacter and Planococcus. Contrary to previous observations from other maritime Antarctic field warming experiments, we recorded no effects of warming with OTCs, or interactive effects of OTCs and TSB application, on bacterial community composition or diversity. Based on these findings, we conclude that further warming of the maritime Antarctic is unlikely to influence soil bacterial community composition or diversity directly, but that increased nutrient inputs arising from enhanced plant growth across the region may affect the composition of soil bacterial communities, with possible effects on ecosystem productivity. [ABSTRACT FROM AUTHOR]

Background and aims: Biochar addition to soil is a carbon capture and storage option with potential to mitigate rising atmospheric CO2 concentrations, yet the consequences for soil organisms and linked ecosystem processes are inconsistent or unknown. We tested biochar impact on soil biodiversity, ecosystem functions, and their interactions, in temperate agricultural soils. Methods: We performed a 27-month factorial experiment to determine effects of biochar, soil texture, and crop species treatments on microbial biomass (PFLA), soil invertebrate density, crop biomass and ecosystem CO2 flux in plant-soil mesocosms. Results: Overall soil microbial biomass, microarthropod abundance and crop biomass were unaffected by biochar, although there was an increase in fungal-bacterial ratio and a positive relationship between the 16:1ω5 fatty acid marker of AMF mass and collembolan density in the biochar-treated mesocosms. Ecosystem CO2 fluxes were unaffected by biochar, but soil carbon content of biochar-treated mesocosms was significantly lower, signifying a possible movement/loss of biochar or priming effect. Conclusions: Compared to soil texture and crop type, biochar had minimal impact on soil biota, crop production and carbon cycling. Future research should examine subtler effects of biochar on biotic regulation of ecosystem production and if the apparent robustness to biochar weakens over greater time spans or in combination with other ecological perturbations. [ABSTRACT FROM AUTHOR]

Rising global temperatures may increase the rates of soil organic matter decomposition by heterotrophic microorganisms, potentially accelerating climate change further by releasing additional carbon dioxide (CO2) to the atmosphere. However, the possibility that microbial community responses to prolonged warming may modify the temperature sensitivity of soil respiration creates large uncertainty in the strength of this positive feedback. Both compensatory responses (decreasing temperature sensitivity of soil respiration in the long-term) and enhancing responses (increasing temperature sensitivity) have been reported, but the mechanisms underlying these responses are poorly understood. In this study, microbial biomass, community structure and the activities of dehydrogenase and ß-glucosidase enzymes were determined for 18 soils that had previously demonstrated either no response or varying magnitude of enhancing or compensatory responses of temperature sensitivity of heterotrophic microbial respiration to prolonged cooling. The soil cooling approach, in contrast to warming experiments, discriminates between microbial community responses and the consequences of substrate depletion, by minimising changes in substrate availability. The initial microbial community composition, determined by molecular analysis of soils showing contrasting respiration responses to cooling, provided evidence that the magnitude of enhancing responses was partly related to microbial community composition. There was also evidence that higher relative abundance of saprophytic Basidiomycota may explain the compensatory response observed in one soil, but neither microbial biomass nor enzymatic capacity were significantly affected by cooling. Our findings emphasise the key importance of soil microbial community responses for feedbacks to global change, but also highlight important areas where our understanding remains limited. [ABSTRACT FROM AUTHOR]

Soils store about four times as much carbon as plant biomass, and soil microbial respiration releases about 60 petagrams of carbon per year to the atmosphere as carbon dioxide. Short-term experiments have shown that soil microbial respiration increases exponentially with temperature. This information has been incorporated into soil carbon and Earth-system models, which suggest that warming-induced increases in carbon dioxide release from soils represent an important positive feedback loop that could influence twenty-first-century climate change. The magnitude of this feedback remains uncertain, however, not least because the response of soil microbial communities to changing temperatures has the potential to either decrease or increase warming-induced carbon losses substantially. Here we collect soils from different ecosystems along a climate gradient from the Arctic to the Amazon and investigate how microbial community-level responses control the temperature sensitivity of soil respiration. We find that the microbial community-level response more often enhances than reduces the mid- to long-term (90 days) temperature sensitivity of respiration. Furthermore, the strongest enhancing responses were observed in soils with high carbon-to-nitrogen ratios and in soils from cold climatic regions. After 90 days, microbial community responses increased the temperature sensitivity of respiration in high-latitude soils by a factor of 1.4 compared to the instantaneous temperature response. This suggests that the substantial carbon stores in Arctic and boreal soils could be more vulnerable to climate warming than currently predicted. [ABSTRACT FROM AUTHOR]

Abstract: In arctic ecosystems, winter soil respiration can contribute substantially to annual CO2 release, yet the source of this C is not clear. We analysed the 14C content of C released from plant-free plots in mountain birch forest and tundra-heath. Winter-respired CO2 was found to be a similar age (tundra) or older (forest) than C released during the previous autumn. Overall, our study demonstrates that the decomposition of older C can continue during the winter, in these two contrasting arctic ecosystems. [Copyright &y& Elsevier]

Abstract: Quantifying the potential for eroding agricultural soils to act as sinks or sources of atmospheric carbon relies on accounting for the pools and fluxes of soil organic carbon (SOC) and nutrients, e.g. nitrogen (N), affected by erosion. Herein, we report the outcomes of an experiment where a C4 maize (Zea mays) crop (δ 13C = −12.1‰) was cultivated and incorporated for 2 years to introduce a ‘pulse’ of 13C-enriched SOC to a C3 arable soil (δ 13C = −27.4‰). Soils were sampled at eroding (top slope and upper slope) and depositional (lower slope and slope foot) positions of an accelerated erosion pathway that were confirmed using 137Cs measurements. The sand particle-sized fraction (63–2000 μm) was predominant and increased in the depositional slope positions due to selective loss of fine particles and preferential deposition of the coarsest fraction of transported sediment. There was a significant isometric relationship between the percentage SOC and total N: top slope > upper slope > lower slope, with similar values in the slope foot to the top slope. The δ 15N values of the soils were enriched (7.3‰) at the slope foot, compared with the other slope positions (average 6.3‰), suggesting increased denitrification rates. The δ 13C values of the soil microbial biomass C extracted from surface soils (0–5 cm) at each slope position showed that the proportion of maize C being incorporated into the soil microbial biomass declined in the downslope direction from 54% (top slope) to 43% (upper slope) to 18% (lower slope) in inverse proportion to the size of the soil microbial biomass, and increased to 41% at the slope foot. This suggests dynamic replacement of the SOC with crop C in the eroding slope positions and dilution of the transported C by C3-SOC in the depositional slope positions. This paper is evidence that erosional distribution of soil carbon leads to differential microbial utilisation of SOC between eroding and depositional sites. [Copyright &y& Elsevier]

Biochar amendment of soil and bioenergy cropping are two eco-engineering strategies at the forefront of attempts to offset anthropogenic carbon dioxide ( CO2) emissions. Both utilize the ability of plants to assimilate atmospheric CO2, and are thus intrinsically linked with soil processes. Research to date has shown that biochar and bioenergy cropping change both aboveground and belowground carbon cycling and soil fertility. Little is known, however, about the form and function of soil food webs in these altered ecosystems, or of the consequences of biodiversity changes at higher trophic levels for soil carbon sequestration. Hitherto studies on this topic have been chiefly observational, and often report contrasting results, thus adding little mechanistic understanding of biochar and bioenergy cropping impacts on soil organisms and linked ecosystem processes. This means it is difficult to predict, or control for, changes in biotic carbon cycling arising from biochar and bioenergy cropping. In this study we explore the potential mechanisms by which soil communities might be affected by biochar, particularly in soils which support bioenergy cropping. We outline the abiotic (soil quality-mediated) and biotic (plant- and microbe-mediated) shifts in the soil environment, and implications for the abundance, diversity, and composition of soil faunal communities. We offer recommendations for promoting biologically diverse, fertile soil via biochar use in bioenergy crop systems, accompanied by specific future research priorities. [ABSTRACT FROM AUTHOR]

Abstract: We investigated the effects of increased soil temperature, water and nutrient availability on soil bacterial communities at Wynn Knolls on Signy Island (60 °S) in the northern maritime Antarctic and at Mars Oasis (71 °S) in the southern maritime Antarctic. After 10–12 months, analyses of the concentrations of ester linked fatty acids (ELFAs) in soil indicated that bacterial communities responded positively to single applications of substrates at both locations, with 20% and 49% increases in total Gram positive and Gram negative bacterial markers, respectively, in response to the application of tryptic soy broth (TSB; a complex substrate containing organic carbon and nitrogen, plus other nutrient elements) at Wynn Knolls, and 120% and 44% increases in Gram positive bacterial markers at Mars Oasis in response to the application of TSB and the amino acid glycine (a relatively simple source of organic carbon and nitrogen), respectively. Responses to the warming treatment were not detected at Wynn Knolls, where open top chambers (OTCs) increased mean monthly soil temperatures by up to 0.7 °C, but at Mars Oasis, where OTCs increased monthly soil temperatures by up to 2.4 °C, warming led to 41% and 46% reductions in the concentrations of Gram positive bacterial markers in soil to which glycine and TSB had been applied, respectively. Warming also led to 55% and 51% reductions in the ratio of Gram positive to Gram negative markers in soils at Mars Oasis to which glycine and TSB had been applied. These data suggest that warming may constrain the responses of bacterial communities to carbon and nitrogen inputs arising from dead plant matter entering maritime Antarctic soils in future decades. [Copyright &y& Elsevier]

A novel bacteriophage infecting Staphylococus pasteuri was isolated during a screen for phages in Antarctic soils. The phage named SpaA1 is morphologically similar to phages of the family Siphoviridae. The 42,784 bp genome of SpaA1 is a linear, double-stranded DNA molecule with 3' protruding cohesive ends. The SpaA1 genome encompasses 63 predicted proteincoding genes which cluster within three regions of the genome, each of apparently different origin, in a mosaic pattern. In two of these regions, the gene sets resemble those in prophages of Bacillus thuringiensis kurstaki str. T03a001 (genes involved in DNA replication/transcription, cell entry and exit) and B. cereus AH676 (additional regulatory and recombination genes), respectively. The third region represents an almost complete genome (except for the short terminal segments) of a distinct bacteriophage, MZTP02. Nearly the same gene module was identified in prophages of B. thuringiensis serovar monterrey BGSC 4AJ1 and B. cereus Rock4-2. These findings suggest that MZTP02 can be shuttled between genomes of other bacteriophages and prophages, leading to the formation of chimeric genomes. The presence of a complete phage genome in the genome of other phages apparently has not been described previously and might represent a 'fast track' route of virus evolution and horizontal gene transfer. Another phage (BceA1) nearly identical in sequence to SpaA1, and also including the almost complete MZTP02 genome within its own genome, was isolated from a bacterium of the B. cereus/B. thuringiensis group. Remarkably, both SpaA1 and BceA1 phages can infect B. cereus and B. thuringiensis, but only one of them, SpaA1, can infect S. pasteuri. This finding is best compatible with a scenario in which MZTP02 was originally contained in BceA1 infecting Bacillus spp, the common hosts for these two phages, followed by emergence of SpaA1 infecting S. pasteuri. [ABSTRACT FROM AUTHOR]

Abstract: Most nitrogen (N) enters many Arctic and Antarctic soil ecosystems as protein. Soils in these polar environments frequently contain large stocks of proteinaceous organic matter, which has decomposed slowly due to low temperatures. In addition to proteins, considerable quantities of d-amino acids and their peptides enter soil from bacteria and lengthy residence times can lead to racemisation of l-amino acids in stored proteins. It has been predicted that climate warming in polar environments will lead to increased rates of soil organic N turnover (i.e. amino acids and peptides of both enantiomers). However, our understanding of organic N breakdown in these soils is very limited. To address this, we tested the influence of chain length and enantiomeric composition on the rate of breakdown of amino acids and peptides in three contrasting tundra soils formed under the grass, moss or lichen-dominated primary producer communities of Signy Island in the South Orkney Islands. Both d- and l-enantiomers of the amino acid monomer were rapidly mineralized to CO2 at rates in line with those found for l-amino acids in many other terrestrial ecosystems. In all three soils, l-peptides were decomposed faster than their amino acid monomer, suggesting a different route of microbial assimilation and catabolism. d-peptides followed the same mineralization pattern as l-peptides in the two contrasting soils under grass and lichens, but underwent relatively slow decomposition in the soil underneath moss, which was similar to the soil under the grass. We conclude that the decomposition of peptides of l-amino acids may be widely conserved amongst soil microorganisms, whereas the decomposition of peptides of d-amino acids may be altered by subtle differences between soils. We further conclude that intense competition exists in soil microbial communities for the capture of both peptides and amino acids produced from protein breakdown. [Copyright &y& Elsevier]

Nitrogen is a key regulator of primary productivity in many terrestrial ecosystems. Historically, only inorganic N (NH4 + and NO3 -) and L-amino acids have been considered to be important to the N nutrition of terrestrial plants. However, amino acids are also present in soil as small peptides and in D-enantiomeric form. We compared the uptake and assimilation of N as free amino acid and short homopeptide in both L- and D-enantiomeric forms. Sterile roots of wheat (Triticum aestivum L.) plants were exposed to solutions containing either 14C-labelled L-alanine, D-alanine, L-trialanine or D-trialanine at a concentration likely to be found in soil solution (10 μM). Over 5 h, plants took up L-alanine, D-alanine and L-trialanine at rates of 0.9±0.3, 0.3±0.06 and 0.3±0.04 mmol g-1 root DW h-1, respectively. The rate of N uptake as L-trialanine was the same as that as Lalanine. Plants lost ca.60% of amino acid C taken up in respiration, regardless of the enantiomeric form, but more (ca.80%) of the L-trialanine C than amino acid C was respired. When supplied in solutions of mixed N form, N uptake as D-alanine was ca.5-fold faster than as NO3 -, but slower than as L-alanine, L-trialanine and NH4 +. Plants showed a limited capacity to take up D-trialanine (0.04±0.03 mmol g-1 root DW h-1), but did not appear to be able to metabolise it. We conclude that wheat is able to utilise L-peptide and D-amino acid N at rates comparable to those of N forms of acknowledged importance, namely L-amino acids and inorganic N. This is true even when solutes are supplied at realistic soil concentrations and when other forms of N are available. We suggest that it may be necessary to reconsider which forms of soil N are important in the terrestrial N cycle. [ABSTRACT FROM AUTHOR]

We have measured total soil organic carbon (SOC), dissolved organic carbon (DOC), and microbial lipid contents (as indices of microbial biomass and community structure), and their distributions to 60 cm depth in soils from replicated medium-term (2003-2008) experimental arable plots subject to different tillage regimes in Scotland. The treatments were zero tillage (ZT), minimum tillage (MT; cultivation to 7 cm), the conventional tillage (CT) practice of ploughing to 20 cm, and deep ploughing (DP) to 40 cm depth. In the 0-30 cm depth range, SOC content (corrected for bulk density differences between tillage treatments) was greatest under ZT and MT, but over 0-60 cm depth the SOC contents of these treatments were similar to the CT and DP treatments. DOC concentrations declined with increasing depth in ZT and MT above 20 cm, but there were no significant differences with depth in the CT and DP treatments. Beneath 20 cm, there was little change in DOC concentration with depth for all treatments, although for the MT treatment, there was less DOC beneath the depth of cultivation. The total microbial biomass decreased with increasing depth over the 0-60 cm range in the ZT and MT treatments, whereas it decreased with depth only below 30-40 cm in the CT and DP treatments. The microbial biomass was significantly different only between 0-5 cm in the ZT, CT and DP treatments, but not for other depths between all treatments. The bacterial biomass was greater in the ZT treatment than in MT, CT and DP near the soil surface, but not significantly different over the whole profile (0-60 cm). The fungal biomass decreased with depth in the ZT and MT treatments over the whole 0-60 cm depth range, whereas it decreased with depth only below 20 cm in the CT and DP treatments. [ABSTRACT FROM AUTHOR]

Abstract: Despite its harsh environmental conditions, terrestrial Antarctica contains a relatively large microbial biomass. Natural abundance carbon and nitrogen stable isotope signatures of organic materials in the dry valleys indicate mixed provenance of the soil organic matter (SOM) with varying proportions of contributions from lichens, mosses, lake-derived algae and cyanobacteria. Here we employed two complementary analytical techniques, biomarker measurements by gas chromatography/mass spectrometry and solution-state 1H nuclear magnetic resonance spectroscopy, to provide further information at a molecular-level about the composition and possible source of SOM in the Garwood Valley, Antarctica. The predominance of branched alkanes and short-chain lipids in the solvent extracts indicates that the primary contribution to the SOM was microbial-derived. Chemical structures in the NaOH extracts from soils were also dominated by amide, peptides, and a CH3-dominating aliphatic region that were characteristic of microbial signatures. Furthermore, the SOM in the Garwood Valley contained compounds that were different from those in the cyanobacteria-dominated mat from a nearby lake (including monoethyl alkanes and enriched side-chain protons). This observation suggests that easily degradable carbon sources from the nearby lake did not dominate the SOM, which is consistent with a fast turnover of the mat-derived organic matter found in the valley. This study highlights the important role of native soil microbes in the carbon transformation and biogeochemistry in terrestrial Antarctica. [ABSTRACT FROM AUTHOR]

Global environmental change, related to climate change and the deposition of airborne N-containing contaminants, has already resulted in shifts in plant community composition among plant functional types in Arctic and temperate alpine regions. In this paper, we review how key ecosystem processes will be altered by these transformations, the complex biological cascades and feedbacks that might result, and some of the potential broader consequences for the earth system. Firstly, we consider how patterns of growth and allocation, and nutrient uptake, will be altered by the shifts in plant dominance. The ways in which these changes may disproportionately affect the consumer communities, and rates of decomposition, are then discussed. We show that the occurrence of a broad spectrum of plant growth forms in these regions (from cryptogams to deciduous and evergreen dwarf shrubs, graminoids and forbs), together with hypothesized low functional redundancy, will mean that shifts in plant dominance result in a complex series of biotic cascades, couplings and feedbacks which are supplemental to the direct responses of ecosystem components to the primary global change drivers. The nature of these complex interactions is highlighted using the example of the climate-driven increase in shrub cover in low-Arctic tundra, and the contrasting transformations in plant functional composition in mid-latitude alpine systems. Finally, the potential effects of the transformations on ecosystem properties and processes that link with the earth system are reviewed. We conclude that the effects of global change on these ecosystems, and potential climate-change feedbacks, cannot be predicted from simple empirical relationships between processes and driving variables. Rather, the effects of changes in species distributions and dominances on key ecosystem processes and properties must also be considered, based upon best estimates of the trajectories of key transformations, their magnitude and rates of change. [ABSTRACT FROM AUTHOR]

Mass populations of toxin-producing cyanobacteria commonly develop in fresh-, brackish- and marine waters and effective strategies for monitoring and managing cyanobacterial health risks are required to safeguard animal and human health. A multi-interdisciplinary study, including two UK freshwaters with a history of toxic cyanobacterial blooms, was undertaken to explore different approaches for the identification, monitoring and management of potentially-toxic cyanobacteria and their associated risks. The results demonstrate that (i) cyanobacterial bloom occurrence can be predicted at a local- and national-scale using process-based and statistical models; (ii) cyanobacterial concentration and distribution in waterbodies can be monitored using remote sensing, but minimum detection limits need to be evaluated; (iii) cyanotoxins may be transferred to spray-irrigated root crops; and (iv) attitudes and perceptions towards risks influence the public's preferences and willingness-to-pay for cyanobacterial health risk reductions in recreational waters. [ABSTRACT FROM AUTHOR]

Nostoc commune Vaucher (a cyanobacterium) is a very conspicuous terrestrial primary producer in Victoria Land, continental Antarctica. Because polar ecosystems are considered to be especially sensitive to environmental changes, understanding the environmental constraints on net carbon (C) fixation by N. commune is necessary to determine the effects of environmental changes on the ecological functioning of ice-free areas of the continent. A model describing net C fixation in terrestrial populations of N. commune in an Antarctic dry valley was constructed using field and laboratory measurements in which N. commune colonies were exposed to different combinations of incident irradiance (400–700 nm), temperature, and degree of desiccation. For desiccated N. commune mats with water content ≤ 30% saturation, net C fixation was highly variable between replicates and could not be modelled. However, for colonies at > 30% saturation, rates of net C fixation and dark respiration depended strongly on irradiance and temperature. Net C fixation reached a maximum rate of 21.6 μg C m− 2 s− 1 at irradiance of approximately 250 μmol m− 2 s− 1 and the optimum temperature of 20.5 °C. Agreement between predicted short-term net C fixation and field and laboratory measurements allowed estimation of total seasonal fixation, using previously published environmental data. Annual net C fixation was estimated in the range 14.5–21.0 g C fixed m− 2 Nostoc mat, depending on year/season. Estimates for different seasons correlated with thermal time (accumulated hours above 0 °C during the year) rather than irradiance, in contrast to communities in local lacustrine environments, where irradiance is the main driver of primary productivity. In the terrestrial habitat, N. commune appears to compromise between an ability to capitalize on short periods of higher temperature and efficient utilization of lower irradiance at low temperature. The relationship between thermal time and net annual C fixation by N. commune is strongly linear. [ABSTRACT FROM AUTHOR]

Lignin is a major determinant of the decomposition of plant materials in soils. Advances in transgenic technology have led to the possibility of modifying lignin to improve the pulping properties of plant materials for papermaking. Previous studies have shown that lignin modifications also affect the rate of plant material decay in soil. The aim of this work was to investigate short-term changes in soil microbial community structures when tobacco residues with reduced activity of enzymes in the monolignol pathway decompose. The residues from lignin-modified plants all decomposed faster than unmodified plant materials. The relative proportions of some of the structural groups of microbial phospholipid fatty acids were affected by genetic modifications, especially the proportion of double unsaturated chain fatty acids, indicative of fungi. [ABSTRACT FROM AUTHOR]

The diversity and phylogenetic relationships of fungi obtained from Antarctic soils were analysed using molecular techniques. Direct extraction of soil community DNA from two locations, Fossil Bluff (FB) and Jane Col (JC), was supplemented with isolation studies. Nucleic acids from both the community DNA and the colony extracts were PCR amplified using primers specific for the 18S rRNA gene (18S rDNA). Amplicons were separated in denaturant gels (DGGE) or following endonuclease digestion (ARDRA). Clones presenting unique ARDRA banding patterns and unique DGGE bands were sequenced. Comparison of the experimental sequences from the different techniques employed with those held online resulted in the repeated recovery of a limited range of related organisms indicating low species diversity of microfungi in these soils. A total of 102 fungal sequences were obtained from FB (37 sequences) and JC (65 sequences) that together were distributed among the Basidiomycota (48 sequences), Ascomycota (48 sequences) and Zygomycota (6 sequences). Sequences of the latter were only recovered from the JC soils. Phylogenetic comparisons of the experimental sequences with those held online have shown high rRNA gene relatedness with those obtained from other, less extreme, environments. [ABSTRACT FROM AUTHOR]

The relationships between the fluxes of nitrous oxide (N2O) and carbon dioxide (CO2), and their concentrations in the soil air, three different measures of potential denitrification, soil moisture, soil temperature and precipitation were investigated in soils from beneath ryegrass (Lolium multiflorum Lam.), red clover (Trifolium pratense L.) and mixture of ryegrass–red clover stands on a gleic cambisol. Investigations were carried out in order to test the hypothesis that the measure(s) of potential denitrification are good predictor(s) of N2O fluxes and thus may be used in empirical models of N2O emission. Potential denitrification characteristics used in this study involved (i) short-term denitrifying enzyme activity (DEA), (ii) long-term denitrification potential (DP), both determined in soils amended with nitrate and glucose, and (iii) denitrification rate (DR) measured using intact soil cores. Flux measurements were made using cylindrical chambers (internal diameter 31 cm, volume 0.015 m3). The fluxes of N2O and CO2 and many other characteristics showed large spatial and temporal variability. Emissions of N2O from the grass plots were closely related to N2O concentrations in the soil atmosphere at 22.5 cm depth. Most soil properties did not correlate with N2O fluxes. It was concluded that DP was not a good predictor for N2O flux. DEA did not show significant relationship with N2O flux, but it is suggested that if determined in representative, large soil samples, DEA could be a predictor of N2O fluxes; this assumption needs, however, verification. The only potential denitrification characteristic which was significantly related to N2O emission both in grass and clover treatments was DR, which was determined in soil cores. [Copyright &y& Elsevier]

The agronomic and pulping performance of transgenic trees with altered lignin has been evaluated in duplicated, long-term field trials. Poplars expressing cinnamyl alcohol dehydrogenase (CAD) or caffeate/5-hydroxyferulate O-methyltransferase (COMT) antisense transgenes were grown for four years at two sites, in France and England. The trees remained healthy throughout the trial. Growth indicators and interactions with insects were normal. No changes in soil microbial communities were detected beneath the transgenic trees. The expected modifications to lignin were maintained in the transgenics over four years, at both sites. Kraft pulping of tree trunks showed that the reduced-CAD lines had improved characteristics, allowing easier delignification, using smaller amounts of chemicals, while yielding more high-quality pulp. This work highlights the potential of engineering wood quality for more environmentally benign papermaking without interfering with tree growth or fitness. [ABSTRACT FROM AUTHOR]

Abiotic factors are major determinants of soil animal distributions and their dominant role is pronounced in extreme ecosystems, with biotic interactions seemingly playing a minor role. We modelled co-occurrence and distribution of the three nematode species that dominate the soil food web of the McMurdo Dry Valleys (Antarctica). Abiotic factors, other biotic groups, and autocorrelation all contributed to structuring nematode species distributions. However, after removing their effects, we found that the presence of the most abundant nematode species greatly, and negatively, affected the probability of detecting one of the other two species. We observed similar patterns in relative abundances for two out of three pairs of species. Harsh abiotic conditions alone are insufficient to explain contemporary nematode distributions whereas the role of negative biotic interactions has been largely underestimated in soil. The future challenge is to understand how the effects of global change on biotic interactions will alter species coexistence. Tancredi Caruso et al. analyze biodiversity survey data from the McMurdo Dry Valleys, an extreme desert ecosystem in Antarctica in which abiotic factors are thought to determine species distributions. Focusing on three nematode species, they find that abiotic factors alone cannot explain the data and interaction between species have been historically underestimated. [ABSTRACT FROM AUTHOR]

Abiotic and biotic factors control ecosystem biodiversity, but their relative contributions remain unclear. The ultraoligotrophic ecosystem of the Antarctic Dry Valleys, a simple yet highly heterogeneous ecosystem, is a natural laboratory well-suited for resolving the abiotic and biotic controls of community structure. We undertook a multidisciplinary investigation to capture ecologically relevant biotic and abiotic attributes of more than 500 sites in the Dry Valleys, encompassing observed landscape heterogeneities across more than 200 km2. Using richness of autotrophic and heterotrophic taxa as a proxy for functional complexity, we linked measured variables in a parsimonious yet comprehensive structural equation model that explained significant variations in biological complexity and identified landscape-scale and fine-scale abiotic factors as the primary drivers of diversity. However, the inclusion of linkages among functional groups was essential for constructing the best-fitting model. Our findings support the notion that biotic interactions make crucial contributions even in an extremely simple ecosystem. Charles Lee, Daniel Laughlin et al. use structural equation modeling to analyze ecological data from more than 500 sites in the Antarctic Dry Valleys. They find that although abiotic factors are the primary drivers of biodiversity variation, biotic interactions are needed to explain the data fully and may play previously underestimated roles. [ABSTRACT FROM AUTHOR]