1. Crystallographic Study of a Novel Subnanomolar Inhibitor Provides Insight on the Binding Interactions of Alkenyldiarylmethanes with Human Immunodeficiency Virus-1 Reverse Transcriptase.
- Author
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Matthew D. Cullen, William C. Ho, Joseph D. Bauman, Kalyan Das, Eddy Arnold, Tracy L. Hartman, Karen M. Watson, Robert W. Buckheit, Christophe Pannecouque, Erik De Clercq, and Mark Cushman
- Subjects
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ENZYME inhibitors , *REVERSE transcriptase , *BINDING sites , *HYDROPHOBIC surfaces , *POLYMERASE chain reaction , *HYDROGEN bonding , *CRYSTALLOGRAPHY , *HIV - Abstract
Two crystal structures have been solved for separate complexes of alkenyldiarylmethane (ADAM) nonnucleoside reverse transcriptase inhibitors (NNRTI) 3and 4with HIV-1 reverse transcriptase (RT). The structures reveal inhibitor binding is exclusively hydrophobic in nature and the shape of the inhibitor-bound NNRTI binding pocket is unique among other reported inhibitorâRT crystal structures. Primarily, ADAMs 3and 4protrude from a large gap in the back side of the binding pocket, placing portions of the inhibitors unusually close to the polymerase active site and allowing 3to form a weak hydrogen bond with Lys223. The lack of additional stabilizing interactions, beyond the observed hydrophobic surface contacts, between 4and RT is quite perplexing given the extreme potency of the compound (IC50⤠1 nM). ADAM 4was designed to be hydrolytically stable in blood plasma, and an investigation of its hydrolysis in rat plasma demonstrated it has a significantly prolonged half-life in comparison to ADAM lead compounds 1and 2. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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