1. Topological control in the hydrogen bond-directed self-assembly of ortho-, meta-, and para-phenylene-substituted dioxamic acid diethyl estersCCDC reference numbers 762570and 762571. For crystallographic data in CIF or other electronic format see DOI: 10.1039/c001682a
- Author
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M. Carmen Muñoz, Gonzalo Blay, Isabel Fernández, José R. Pedro, Rosa Carrasco, María Castellano, Rafael Ruiz-García, and Joan Cano
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HYDROGEN bonding , *MOLECULAR self-assembly , *X-ray diffraction , *DENSITY functionals , *DIETHYL sulfate , *CHEMICAL structure , *AMIDES , *TOPOLOGY - Abstract
The structures of the series of N,N′-1,n-phenylenebis(oxamic acid ethyl ester) molecules with n= 2 (H2Et2opba, 1), 3 (H2Et2mpba, 2), and 4 (H2Et2ppba, 3) have been determined by single-crystal X-ray diffraction (XRD) methods. Density functional (DF) calculations have been performed on the simplest model system N-phenyloxamic acid methyl ester (HMepma). Compounds 1–3have either folded (H2Et2opba), bent (H2Et2mpba), or linear (H2Et2ppba) almost planar (periplanar) molecular configurations with the two oxalamide moieties being slightly tilted up and down, respectively, with respect to the benzene ring. The energy calculations as a function of the torsion angle () around the N(amide)–C(benzene) bond for HMepma reveal that the minimum energy synand antiperiplanar conformations of the carboxamide functions are more stable than the corresponding synand antiplanar ones (= 0 and 180°) by 0.18 and 0.13 kcal mol−1, respectively. The calculated values for the synand antiperiplanar minimized conformers of HMepma are 16.0 and 200.0°, respectively, in reasonable agreement with the experimental values for 1–3[= 39.0(4) and 225.0(3) (H2Et2opba), 32.6(5) (H2Et2mpba), and 34.7(2)° (H2Et2ppba)]. This situation likely minimizes the forced repulsive interactions between the amide hydrogen and the nearest benzene hydrogen atoms while it maximizes the attractive interactions between the carbonyl amide oxygen and the nearest benzene hydrogen atoms, which are then implicated in a relatively weak, intramolecular C–H(benzene)OC(amide) hydrogen bond [d(HO) = 2.45(2)–2.57(2) Å]. A supramolecular aggregation of molecules into either a duplex (H2Et2opba) or a brick-wall sheet (H2Et2ppba) occurs for 1and 3, respectively, through moderately strong, intermolecular N–H(amide)OC(amide) hydrogen bonds [d′(HO) = 2.17(2)–2.37(2) Å]. By contrast, moderately weak, intermolecular N–H(amide)OC(ester) hydrogen bonds between the H2Et2mpba molecules are involved in 2to give a meso-helical chain with a unique hydrogen-bonded oxalamide acid ester dimeric unit. The energy calculations as a function of the intermolecular N–H(amide)OC(ester) hydrogen bond distance (d′) for the {HMepma}2dimer show an energy minimum at 2.37 Å, in excellent agreement with the experimental value of 2[d′(HO) = 2.42(4) Å]. The calculated value of the hydrogen bond energy for {HMepma}2(EHB= 4.83 kcal mol−1) is consistent with a partially covalent nature of the interaction between the amide hydrogen and the carbonyl ester oxygen atoms, as confirmed by the existence of a significant electron density delocalization within the resulting four-center H2O2diamond core. [ABSTRACT FROM AUTHOR]
- Published
- 2010