1. Investigating Genetic Variants in Patients with Left Ventricular Assist Devices for Nonischemic Cardiomyopathy.
- Author
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Scott, C., Posey, J., Butac, A., Lamba, H., Oberton, S., Shafii, A., Liao, K., Loor, G., George, J., Simpson, L., Delgado, R., Civitello, A., and Nair, A.
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HEART assist devices , *GENETIC variation , *CARDIOMYOPATHIES , *GENETIC testing , *DILATED cardiomyopathy , *GENETIC mutation - Abstract
To investigate genetic mutations in patients with dilated nonischemic cardiomyopathy (NICM) and history of left ventricular assist device (LVAD) implant. 76 patients were included in this retrospective study. Clinical data was obtained to determine environmental exposures (i.e. infectious, chemotherapy, pregnancy, significant alcohol and drug use), family history, native heart function, and the attributed etiology of their cardiomyopathy as determined by each patient's cardiologist. Genetic testing was obtained using a third-party 168-gene cardiomyopathy panel. Variants were classified into five categories: pathogenic, likely pathogenic, variant of uncertain significance (VUS), likely benign, or benign. The VUS were investigated with population allele frequencies from Gnomad or Varsome databases and two modeling scores, Rare Exome Variant Ensemble Learner (Revel) and Combined Annotation Dependent Depletion (CADD), to investigate the likely pathogenicity. The patients were majority male (68%) and racially diverse, with 59% Black, 21% Hispanic, 17% White, and 3% Asian. Family history of heart failure was positive in 29% of the sample. The possible etiology of heart failure was 16% environmental, 8% familial, and 75% idiopathic or unknown. Regarding genetic testing results, 67 (88%) patients had variants identified; the remaining 9 patients (12%) had negative results. There were a total 170 variants for those 67 patients, with an average of 2.6 variants per patient. Of the 170 variants, 14 (8%) were pathogenic/likely pathogenic and 7 of these were titin (TTN) mutations. 151 (89%) of variants were VUS. Allele frequencies were not found for 17% of the VUS, and the remaining variants had total population and race-specific allele frequencies less than 1%. 83 (55%) of VUS were among the top 1% deleterious substitutions by CADD scores, and 27 (18%) of VUS had a Revel score > 0.5, on a scale of 0 to 1, suggesting more likely pathogenic variants. Patients with end-stage dilated NICM undergoing LVAD are likely to have genetic variants. The most frequent pathogenic variants were in TTN but most results are VUS. Due to the high frequency of VUS, augmenting genetic testing in this population may contribute to identification of additional pathogenic variants. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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