7 results on '"S, Sandy"'
Search Results
2. Association between ADIPOQ SNPs with plasma adiponectin and glucose homeostasis and adiposity phenotypes in the IRAS Family Study
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An, S. Sandy, Hanley, Anthony J.G., Ziegler, Julie T., Brown, W. Mark, Haffner, Steven M., Norris, Jill M., Rotter, Jerome I., Guo, Xiuqing, Chen, Y.-D. Ida, Wagenknecht, Lynne E., Langefeld, Carl D., Bowden, Donald W., and Palmer, Nicholette D.
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SINGLE nucleotide polymorphisms , *ADIPONECTIN , *BLOOD proteins , *HOMEOSTASIS , *BLOOD sugar , *OBESITY , *PHENOTYPES , *ADIPOKINES - Abstract
Abstract: Context: Adiponectin is an adipocytokine associated with a variety of metabolic traits. These associations in human studies, in conjunction with functional studies in model systems, have implicated adiponectin in multiple metabolic processes. Objective: We hypothesize that genetic variants associated with plasma adiponectin would also be associated with glucose homeostasis and adiposity phenotypes. Design and Setting: The Insulin Resistance Atherosclerosis Family Study was designed to identify the genetic and environmental basis of insulin resistance and adiposity in the Hispanic- (n =1,424) and African-American (n =604) population. Main Outcome Measures: High quality metabolic phenotypes, e.g. insulin sensitivity (SI), acute insulin response (AIR), disposition index (DI), fasting glucose, body mass index (BMI), visceral adipose tissue (VAT), subcutaneous adipose tissue (SAT), and waist circumference, were explored. Results: Based on association analysis of more than 40 genetic polymorphisms in the adiponectin gene (ADIPOQ), we found no consistent association of ADIPOQ variants with plasma adiponectin levels and adiposity phenotypes. However, there were two promoter variants, rs17300539 and rs822387, associated with plasma adiponectin levels (P =0.0079 and 0.021, respectively) in the Hispanic-American cohort that were also associated with SI (P =0.0067 and 0.013, respectively). In contrast, there was only a single promoter SNP, rs17300539, associated with plasma adiponectin levels (P =0.0018) and fasting glucose (P =0.042) in the African-American cohort. Strikingly, high impact coding variants did not show evidence of association. Conclusions: The lack of consistent patterns of association between variants, adiponectin levels, glucose homeostasis, and adiposity phenotypes suggests a reassessment of the influence of adiponectin in these pathways. [Copyright &y& Elsevier]
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- 2012
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3. Resequencing and Analysis of Variation in the TCF7L2 Gene in African Americans Suggests That SNP rs7903146 Is the Causal Diabetes Susceptibility Variant.
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Palmer, Nicholette D., Hester, Jessica M., An, S. Sandy, Adeyemo, Adebowale, Rotimi, Charles, Langefeld, Carl D., Freedman, Barry I., Ng, Maggie C. Y., and Bowden, Donald W.
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TRANSCRIPTION factors , *TYPE 2 diabetes , *HEALTH of African Americans , *DISEASE susceptibility , *GENETIC polymorphisms , *HUMAN genetic variation , *MICROSATELLITE repeats - Abstract
OBJECTIVE--Variation in the transcription factor 7-like 2 (TCF7L2) locus is associated with type 2 diabetes across multiple ethnicities. The aim of this study was to elucidate which variant in TCF7L2 confers diabetes susceptibility in African Americans. RESEARCH DESIGN AND METHODS--Through the evaluation of tagging single nucleotide polymorphisms (SNPs), type 2 diabetes susceptibility was limited to a 4.3-kb interval, which contains the YRI (African) linkage disequilibrium (LD) block containing rs7903146. To better define the relationship between type 2 diabetes risk and genetic variation we resequenced this 4.3-kb region in 96 African American DNAs. Thirty-three novel and 13 known SNPs were identified: 20 with minor allele frequencies (MAF) >0.05 and 12 with MAF >0.10. These polymorphisms and the previously identified DG10S478 microsatellite were evaluated in African American type 2 diabetic cases (n = 1,033) and controls (n = 1,106). RESULTS--Variants identified from direct sequencing and databases were genotyped or imputed. Fifteen SNPs showed association with type 2 diabetes (P < 0.05) with rs7903146 being the most significant (P = 6.32 X 10-6). Results of imputation, hap-lotype, and conditional analysis of SNPs were consistent with rs7903146 being the trait-defining SNP. Analysis of the DG10S478 microsatellite, which is outside the 4.3-kb LD block, revealed consistent association of risk allele 8 with type 2 diabetes (odds ratio [OR] = 1.33; P = 0.022) as reported in European populations; however, allele 16 (MAF = 0.016 cases and 0.032 controls) was strongly associated with reduced risk (OR = 0.39; P = 5.02 X 10-5) in contrast with previous studies. CONCLUSIONS--In African Americans, these observations suggest that rs7903146 is the trait-defining polymorphism associated with type 2 diabetes risk. Collectively, these results support ethnic differences in type 2 diabetes associations. [ABSTRACT FROM AUTHOR]
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- 2011
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4. Genetic risk assessment of type 2 diabetes-associated polymorphisms in African Americans.
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Cooke JN, Ng MC, Palmer ND, An SS, Hester JM, Freedman BI, Langefeld CD, Bowden DW, Cooke, Jessica N, Ng, Maggie C Y, Palmer, Nicholette D, An, S Sandy, Hester, Jessica M, Freedman, Barry I, Langefeld, Carl D, and Bowden, Donald W
- Abstract
Objective: Multiple single nucleotide polymorphisms (SNPs) associated with type 2 diabetes (T2D) susceptibility have been identified in predominantly European-derived populations. These SNPs have not been extensively investigated for individual and cumulative effects on T2D risk in African Americans.Research Design and Methods: Seventeen index T2D risk variants were genotyped in 2,652 African American case subjects with T2D and 1,393 nondiabetic control subjects. Individual SNPs and cumulative risk allele loads were assessed for association with risk for T2D. Cumulative risk was assessed by counting risk alleles and evaluating the difference in cumulative risk scores between case subjects and control subjects. A second analysis weighted risk scores (ln [OR]) based on previously reported European-derived effect sizes.Results: Frequencies of risk alleles ranged from 8.6 to 99.9%. Eleven SNPs had ORs >1, and 5 from ADAMTS9, WFS1, CDKAL1, JAZF1, and TCF7L2 trended or had nominally significant evidence of T2D association (P < 0.05). Individuals carried between 13 and 29 risk alleles. Association was observed between T2D and increase in risk allele load (unweighted OR 1.04 [95% CI 1.01-1.08], P = 0.010; weighted 1.06 [1.03-1.10], P = 8.10 × 10(-5)). When TCF7L2 SNP rs7903146 was included as a covariate, the risk score was no longer associated with T2D in either model (unweighted 1.02 [0.98-1.05], P = 0.33; weighted 1.02 [0.98-1.06], P = 0.40).Conclusions: The trend of increase in risk for T2D with increasing risk allele load is similar to observations in European-derived populations; however, these analyses indicate that T2D genetic risk is primarily mediated through the effect of TCF7L2 in African Americans. [ABSTRACT FROM AUTHOR]- Published
- 2012
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5. Genetic Risk Assessment of Type 2 Diabetes--Associated Polymorphisms in African Americans.
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Cooke, Jessica N., Ng, Maggie C.Y., Palmer, Nicholette D., An, S. Sandy, Hester, Jessica M., Freedman, Barry I., Langefeld, Carl D., and Bowden, Donald W.
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GENETICS of type 2 diabetes , *GENETIC polymorphisms , *DISEASES in African Americans , *SINGLE nucleotide polymorphisms , *DISEASE susceptibility - Abstract
OBJECTIVE--Multiple single nucleotide polymorphisms (SNPs) associated with type 2 diabetes (T2D) susceptibility have been identified in predominantly European-derived populations. These SNPs have not been extensively investigated for individual and cumulative effects on T2D risk in African Americans. RESEARCH DESIGN AND METHODS--Seventeen index T2D risk variants were genotyped in 2,652 African American case subjects with T2D and 1,393 nondiabetic control subjects. Individual SNPs and cumulative risk allele loads were assessed for association with risk for T2D. Cumulative risk was assessed by counting risk alleles and evaluating the difference in cumulative risk scores between case subjects and control subjects. A second analysis weighted risk scores (ln [OR]) based on previously reported European-derived effect sizes. RESULTS--Frequencies of risk alleles ranged from 8.6 to 99.9%. Eleven SNPs had ORs >1 and 5 from ADAMTS9, WFS1, CDKAL1JAZF1, and TCF7L2 trended or had nominally significant evidence of T2D association (P < 0.05). Individuals carried between 13 and 29 risk alleles. Association was observed between T2D and increase in risk allele load (unweighted OR 1.04 [95% CI 1.01-1.08], P = 0.010; weighted 1.06 [1.03-1.10], P = 8.10 3 1025). When TCF7L2 SNP rs7903146 was included as a covariate, the risk score was no longer associated with T2D in either model (unweighted 1.02 [0.98-1.05], P = 0.33; weighted 1.02 [0.98-1.06], P = 0.40). CONCLUSIONS--The trend of increase in risk for T2D with increasing risk allele load is similar to observations in European-derived populations; however, these analyses indicate that T2D genetic risk is primarily mediated through the effect of TCF7L2 in African Americans. [ABSTRACT FROM AUTHOR]
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- 2012
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6. A Genome-Wide Association Search for Type 2 Diabetes Genes in African Americans.
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Palmer, Nicholette D., McDonough, Caitrin W., Hicks, Pamela J., Roh, Bong H., Wing, Maria R., An, S. Sandy, Hester, Jessica M., Cooke, Jessica N., Bostrom, Meredith A., Rudock, Megan E., Talbert, Matthew E., Lewis, Joshua P., Ferrara, Assiamira, Lingyi Lu, Ziegler, Julie T., Sale, Michele M., Divers, Jasmin, Shriner, Daniel, Adeyemo, Adebowale, and Rotimi, Charles N.
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TYPE 2 diabetes , *AFRICAN Americans , *DIABETES , *GENOMES , *META-analysis , *KIDNEY diseases - Abstract
African Americans are disproportionately affected by type 2 diabetes (T2DM) yet few studies have examined T2DM using genome-wide association approaches in this ethnicity. The aim of this study was to identify genes associated with T2DM in the African American population. We performed a Genome Wide Association Study (GWAS) using the Affymetrix 6.0 array in 965 African-American cases with T2DM and end-stage renal disease (T2DM-ESRD) and 1029 population-based controls. The most significant SNPs (n = 550 independent loci) were genotyped in a replication cohort and 122 SNPs (n = 98 independent loci) were further tested through genotyping three additional validation cohorts followed by meta-analysis in all five cohorts totaling 3,132 cases and 3,317 controls. Twelve SNPs had evidence of association in the GWAS (P<0.0071), were directionally consistent in the Replication cohort and were associated with T2DM in subjects without nephropathy (P<0.05). Meta-analysis in all cases and controls revealed a single SNP reaching genome-wide significance (P<2.5 × 10-8). SNP rs7560163 (P=7.0 × 10-9, OR (95% CI) = 0.75 (0.67-0.84)) is located intergenically between RND3 and RBM43. Four additional loci (rs7542900, rs4659485, rs2722769 and rs7107217) were associated with T2DM (P<0.05) and reached more nominal levels of significance (P<2.5 × 10-5) in the overall analysis and may represent novel loci that contribute to T2DM. We have identified novel T2DM-susceptibility variants in the African-American population. Notably, T2DM risk was associated with the major allele and implies an interesting genetic architecture in this population. These results suggest that multiple loci underlie T2DM susceptibility in the African-American population and that these loci are distinct from those identified in other ethnic populations. [ABSTRACT FROM AUTHOR]
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- 2012
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7. A genome-wide association study for diabetic nephropathy genes in African Americans.
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McDonough, Caitrin W., Palmer, Nicholette D., Hicks, Pamela J., Roh, Bong H., An, S Sandy, Cooke, Jessica N., Hester, Jessica M., Wing, Maria R., Bostrom, Meredith A., Rudock, Megan E., Lewis, Joshua P., Talbert, Matthew E., Blevins, Rebecca A, Lu, Lingyi, Ng, Maggie C. Y, Sale, Michele M., Divers, Jasmin, Langefeld, Carl D., Freedman, Barry I., and Bowden, Donald W.
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DIABETIC nephropathies , *GENOMES , *GENES , *DISEASES in African Americans , *CHRONIC kidney failure , *TYPE 2 diabetes , *PATIENTS , *GENETICS - Abstract
A genome-wide association study was performed using the Affymetrix 6.0 chip to identify genes associated with diabetic nephropathy in African Americans. Association analysis was performed adjusting for admixture in 965 type 2 diabetic African American patients with end-stage renal disease (ESRD) and in 1029 African Americans without type 2 diabetes or kidney disease as controls. The top 724 single nucleotide polymorphisms (SNPs) with evidence of association to diabetic nephropathy were then genotyped in a replication sample of an additional 709 type 2 diabetes-ESRD patients and 690 controls. SNPs with evidence of association in both the original and replication studies were tested in additional African American cohorts consisting of 1246 patients with type 2 diabetes without kidney disease and 1216 with non-diabetic ESRD to differentiate candidate loci for type 2 diabetes-ESRD, type 2 diabetes, and/or all-cause ESRD. Twenty-five SNPs were significantly associated with type 2 diabetes-ESRD in the genome-wide association and initial replication. Although genome-wide significance with type 2 diabetes was not found for any of these 25 SNPs, several genes, including RPS12, LIMK2, and SFI1 are strong candidates for diabetic nephropathy. A combined analysis of all 2890 patients with ESRD showed significant association SNPs in LIMK2 and SFI1 suggesting that they also contribute to all-cause ESRD. Thus, our results suggest that multiple loci underlie susceptibility to kidney disease in African Americans with type 2 diabetes and some may also contribute to all-cause ESRD. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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