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Previous studies have shown that sampling processing and identification methods for neural networks damage identification in multi-channel and multi-source structural dynamic response data exhibit diversity, and the robustness and generalization issues of the model have not been effectively solved. This paper proposes a sample preprocessing technique and mixed training method suitable for multi-channel and multi-source dynamic response data to optimize the current structural damage identification methods based on neural networks. Through multi-dimensional discrete autocorrelation processing and Fourier transform, the preprocessed datasets from multiple sensors with multi-channel can access multi-channel CNN. Furthermore, the measured datasets from the actual structures are mixed with numerical simulation datasets before being used for neural network model training to address the model calibration and the imbalanced sample size under each classification label. The results of extensive model experiments and finite element verification of specimens show that the method performs outstandingly in detecting and identifying damage to simply supported beam structures using multi-channel CNN. The neural network model trained with preprocessed samples exhibits excellent robustness. The model using the mixed training method still performs well in identifying the accuracy of damage location and degree in simply supported beam structures after changing beam section and initial excitation. The method has certain generalization ability in detecting unknown damage in simply supported beam structures. [ABSTRACT FROM AUTHOR]