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Deep eutectic solvent (DES) pulping is a promising alternative to conventional pulping techniques, mainly owing to the favourable solvent properties and reduced environmental impact. DES lignin, however, still awaits complete structural characterisation, especially in terms of the potential incorporation of DES constituents. Here, we describe the structural modification of lignin during lactic acid : choline chloride DES pulping of Miscanthus biomass in unprecedented detail. We show that DES pulping induces β-O-4 aryl ether cleavage and extensive substitution by DES incorporation. The covalent incorporation of both lactic acid and choline was confirmed through saponification of the precipitated lignin and lignin model compound studies. Detailed multidimensional NMR analysis allowed us to validate aliphatic and benzylic lactic acid esterification as well as benzylic choline and lactic acid etherification of β-O-4 aryl ethers. We demonstrate that these reactions occur in all process phases by comprehensive analysis of the precipitated, residual and solubilised lignin fractions, together comprising 93% w/w of the initial lignin in Miscanthus. Covalent lactic acid and choline incorporation occurs independently of biomass type (grass, hardwood and softwood) and can be modulated by water content, reaction duration and temperature. Going forward, these new insights will offer ample opportunities for producing lignins with unique structural features and ultimately will open up new avenues for specific functional ingredient applications. Our work thus clearly advances the DES biorefinery concept and contributes to the valorisation of lignin in general. [ABSTRACT FROM AUTHOR]

Insoluble fiber degradation by supplemented enzymes was previously shown to improve fermentation in poultry, and has been further postulated to disrupt the cereal cell wall matrix, thus improving nutrient digestion. Here, we characterized insoluble feed-derived polysaccharides and lignin in digesta from broilers fed wheat-soybean and maize-soybean diets without or with xylanase/glucanase supplementation. Enzyme supplementation in wheat-soybean diet increased the yield of water-extractable arabinoxylan (AX) in the ileum. Still, most AX (> 73 %) remained insoluble across wheat-soybean and maize-soybean diets. Analysis of so-far largely ignored lignin demonstrated that a lignin-rich fiber fraction accumulated in the gizzard, while both insoluble AX and lignin reaching the ileum appeared to be excreted unfermented. More than 20 % of water-insoluble AX was extracted by 1 M NaOH and 11–20 % was sequentially extracted by 4 M NaOH, alongside other hemicelluloses, from ileal digesta and excreta across all diets. These findings showed that enzyme-supplementation did not impact AX extractability by alkali, under the current experimental conditions. It is, therefore, suggested that the degradation of insoluble AX by dietary xylanase in vivo mainly results in arabinoxylo-oligosaccharide release, which is not accompanied by a more loose cell wall architecture. [ABSTRACT FROM AUTHOR]

Background: The polyphyletic group of seagrasses shows an evolutionary history from early monocotyledonous land plants to the marine environment. Seagrasses form important coastal ecosystems worldwide and large amounts of seagrass detritus washed on beaches might also be valuable bioeconomical resources. Despite this importance and potential, little is known about adaptation of these angiosperms to the marine environment and their cell walls. Results: We investigated polysaccharide composition of nine seagrass species from the Mediterranean, Red Sea and eastern Indian Ocean. Sequential extraction revealed a similar seagrass cell wall polysaccharide composition to terrestrial angiosperms: arabinogalactans, pectins and different hemicelluloses, especially xylans and/or xyloglucans. However, the pectic fractions were characterized by the monosaccharide apiose, suggesting unusual apiogalacturonans are a common feature of seagrass cell walls. Detailed analyses of four representative species identified differences between organs and species in their constituent monosaccharide composition and lignin content and structure. Rhizomes were richer in glucosyl units compared to leaves and roots. Enhalus had high apiosyl and arabinosyl abundance, while two Australian species of Amphibolis and Posidonia, were characterized by high amounts of xylosyl residues. Interestingly, the latter two species contained appreciable amounts of lignin, especially in roots and rhizomes whereas Zostera and Enhalus were lignin-free. Lignin structure in Amphibolis was characterized by a higher syringyl content compared to that of Posidonia. Conclusions: Our investigations give a first comprehensive overview on cell wall composition across seagrass families, which will help understanding adaptation to a marine environment in the evolutionary context and evaluating the potential of seagrass in biorefinery incentives. [ABSTRACT FROM AUTHOR]

Background: The ascomycete fungus Podospora anserina has been appreciated for its targeted carbohydrate-active enzymatic arsenal. As a late colonizer of herbivorous dung, the fungus acts specifically on the more recalcitrant fraction of lignocellulose and this lignin-rich biotope might have resulted in the evolution of ligninolytic activities. However, the lignin-degrading abilities of the fungus have not been demonstrated by chemical analyses at the molecular level and are, thus far, solely based on genome and secretome predictions. To evaluate whether P. anserina might provide a novel source of lignin-active enzymes to tap into for potential biotechnological applications, we comprehensively mapped wheat straw lignin during fungal growth and characterized the fungal secretome. Results: Quantitative 13C lignin internal standard py-GC–MS analysis showed substantial lignin removal during the 7 days of fungal growth (24% w/w), though carbohydrates were preferably targeted (58% w/w removal). Structural characterization of residual lignin by using py-GC–MS and HSQC NMR analyses demonstrated that Cα-oxidized substructures significantly increased through fungal action, while intact β-O-4′ aryl ether linkages, p-coumarate and ferulate moieties decreased, albeit to lesser extents than observed for the action of basidiomycetes. Proteomic analysis indicated that the presence of lignin induced considerable changes in the secretome of P. anserina. This was particularly reflected in a strong reduction of cellulases and galactomannanases, while H2O2-producing enzymes clearly increased. The latter enzymes, together with laccases, were likely involved in the observed ligninolysis. Conclusions: For the first time, we provide unambiguous evidence for the ligninolytic activity of the ascomycete fungus P. anserina and expand the view on its enzymatic repertoire beyond carbohydrate degradation. Our results can be of significance for the development of biological lignin conversion technologies by contributing to the quest for novel lignin-active enzymes and organisms. [ABSTRACT FROM AUTHOR]

Laccase-mediator systems (LMS) are potential green tools to improve the valorization of lignocellulosic biomass by selective degradation of lignin. Despite extensive attention devoted to lignin degradation by LMS in literature, knowledge on the underlying mechanisms is largely limited to model compound studies. Here, we report a mechanistic study on the delignification of wheat straw (WS) and corn stover (CS) by a laccase/HBT system. Quantitative 13C-IS py-GC-MS analysis revealed that WS and CS were delignified in the range of 28–51% (w/w). Based on a combination of py-GC-MS, 2D NMR, SEC and RP-UHPLC-MS, extensive structural characterization of both residual and solubilized lignin structures was performed, from which we reconstructed the degradation pathway of native lignin by laccase/HBT. For the first time, we show that degradation of native lignin in the plant cell wall matrix by LMS occurs via both Cα–Cβ cleavage and ether cleavage of β-O-4′ aryl ethers, and that the latter primarily occurs via cleavage of the β-O bond. Cγ-Coumaroylated substructures were found to be more recalcitrant towards degradation than non-acylated substructures. In addition to lignin degradation, our results provide evidence for grafting of HBT onto lignin. [ABSTRACT FROM AUTHOR]

Miscanthus is a perennial grass suitable for the production of lignocellulosic biomass on marginal lands. The effects of salt stress on Miscanthus cell wall composition and its consequences on biomass quality have nonetheless received relatively little attention. In this study, we investigated how exposure to moderate (100 mM NaCl) or severe (200 mM NaCl) saline growing conditions altered the composition of both primary and secondary cell wall components in the stems of 15 Miscanthus sinensis genotypes. The exposure to stress drastically impacted biomass yield and cell wall composition in terms of content and structural features. In general, the observed compositional changes were more pronounced under severe stress conditions and were more apparent in genotypes with a higher sensitivity towards stress. Besides a severely reduced cellulose content, salt stress led to increased pectin content, presumably in the form of highly branched rhamnogalacturonan type I. Although salt stress had a limited effect on the total lignin content, the acid‐soluble lignin content was strongly increased in the most sensitive genotypes. This effect was also reflected in substantially altered lignin structures and led to a markedly reduced incorporation of syringyl subunits and p‐coumaric acid moieties. Interestingly, plants that were allowed a recovery period after stress ultimately had a reduced lignin content compared to those continuously grown under control conditions. In addition, the salt stress‐induced cell wall alterations contributed to an improved enzymatic saccharification efficiency. [ABSTRACT FROM AUTHOR]

BACKGROUND: This study investigated the ruminal degradability of various wheat straw types by the white‐rot fungi Ceriporiopsis subvermispora (CS) and Lentinula edodes (LE). Different cultivars (CV) of wheat straw at different maturity stages (MS) were treated with the fungi for 7 weeks and assessed for chemical composition and in vitro gas production (IVGP). RESULTS: Both fungi showed a more pronounced degradation of lignin on a more mature straw (MS3; 89.0%) in comparison with the straw harvested at an earlier stage (MS1; 70.7%). Quantitative pyrolysis coupled to gas chromatography and mass spectrometry, using 13C lignin as an internal standard 13C‐IS Py‐GC/MS revealed that lignin in more mature straw was degraded and modified to a greater extent. In contrast, cellulose was less degraded in MS3, as compared to MS1 (8.3% versus 14.6%). There was no effect of different MS on the IVGP of the fungus‐treated straws. Among the different straw cultivars, the extent of lignin degradation varied greatly (47% to 93.5%). This may explain the significant (P < 0.001) effect of cultivar on the IVGP of the fungal‐treated straws. Regardless of the factors tested, both fungi were very capable of improving the IVGP of all straw types by 15.3% to 47.6%, (as compared to untreated straw), with CS performing better than LE – on different MS (33.6% versus 20.4%) and CVs (43.2% versus 29.1%). CONCLUSION: The extent of lignin degradation caused by fungal treatment was more pronounced on the more mature and lignified straw, while variable results were obtained with different cultivars. Both fungi were capable of improving the IVGP of various straw types. © 2018 The Authors. Journal of the Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. [ABSTRACT FROM AUTHOR]

Plant biomass conversion by saprotrophic fungi plays a pivotal role in terrestrial carbon (C) cycling. The general consensus is that fungi metabolize carbohydrates, while lignin is only degraded and mineralized to CO2. Recent research, however, demonstrated fungal conversion of 13C-monoaromatic compounds into proteinogenic amino acids. To unambiguously prove that polymeric lignin is not merely degraded, but also metabolized, carefully isolated 13C-labeled lignin served as substrate for Agaricus bisporus, the world's most consumed mushroom. The fungus formed a dense mycelial network, secreted lignin-active enzymes, depolymerized, and removed lignin. With a lignin carbon use efficiency of 0.14 (g/g) and fungal biomass enrichment in 13C, we demonstrate that A. bisporus assimilated and further metabolized lignin when offered as C-source. Amino acids were high in 13C-enrichment, while fungal-derived carbohydrates, fatty acids, and ergosterol showed traces of 13C. These results hint at lignin conversion via aromatic ring-cleaved intermediates to central metabolites, underlining lignin's metabolic value for fungi. [ABSTRACT FROM AUTHOR]

Highlights • Pectin and hemicellulose are efficiently extracted by LiCl-DMSO after ball milling. • Solubility of pure pectins in LiCl-DMSO depends on DM. • Solubility of pectin in the cell wall is determined by more factors than DM and DA. • LiCl-DMSO soluble pectin and xyloglucan are highly acetylated. Abstract In order to understand the architecture of the primary plant cell wall, knowledge on its polysaccharides and their interactions is of importance. In this study, further architectural insight was obtained by sequential LiCl-DMSO and buffer extractions after planetary ball milling. After milling, up to 50% of all polysaccharides in the Chelating agent Unextractable Solids (ChUS) from carrot, tomato and strawberry solubilised in LiCl-DMSO without loss of structural information. Approximately 30% of all pectin was LiCl-DMSO insoluble but solubilised in the subsequent buffer extraction, and these populations had higher HG:RG-I ratios than LiCl-DMSO soluble populations. The degree of methyl-esterification (DM) of pure pectins highly determined its solubility in LiCl-DMSO. However, solubility of cell wall pectin was governed by more factors since both soluble and insoluble pectin were substantially methyl-esterified and acetylated. Digestion of LiCl-DMSO soluble and insoluble fractions by pectinases confirmed the presence of acetylated HG-regions for carrot and strawberry pectin. [ABSTRACT FROM AUTHOR]

Understanding the mechanisms underlying plant biomass recalcitrance at the molecular level can only be achieved by accurate analyses of both the content and structural features of the molecules involved. Current quantification of lignin is, however, majorly based on unspecific gravimetric analysis after sulfuric acid hydrolysis. Hence, our research aimed at specific lignin quantification with concurrent characterization of its structural features. Hereto, for the first time, a polymeric 13C lignin was used as internal standard (IS) for lignin quantification via analytical pyrolysis coupled to gas chromatography with mass-spectrometric detection in selected ion monitoring mode (py-GC-SIM-MS). In addition, relative response factors (RRFs) for the various pyrolysis products obtained were determined and applied. First, 12C and 13C lignin were isolated from nonlabeled and uniformly 13C labeled wheat straw, respectively, and characterized by heteronuclear single quantum coherence (HSQC), nuclear magnetic resonance (NMR), and py-GC/MS. The two lignin isolates were found to have identical structures. Second, 13C-IS based lignin quantification by py-GC-SIM-MS was validated in reconstituted biomass model systems with known contents of the 12C lignin analogue and was shown to be extremely accurate (>99.9%, R² > 0.999) and precise (RSD < 1.5%). Third, 13C-IS based lignin quantification was applied to four common poaceous biomass sources (wheat straw, barley straw, corn stover, and sugar cane bagasse), and lignin contents were in good agreement with the total gravimetrically determined lignin contents. Our robust method proves to be a promising alternative for the high-throughput quantification of lignin in milled biomass samples directly and simultaneously provides a direct insight into the structural features of lignin. [ABSTRACT FROM AUTHOR]

Lytic polysaccharide monooxygenases (LPMOs) are able to cleave recalcitrant polysaccharides, such as cellulose, by oxidizing the C1 and/or C4 atoms. The analysis of the resulting products requires a variety of analytical techniques. Up to now, these techniques mainly focused on the identification of non-oxidized and C1-oxidized oligosaccharides. The analysis of C4-oxidized gluco-oligosaccharides is mostly performed by using high pressure anion exchange chromatography (HPAEC). However, the alkaline conditions used during HPAEC analysis lead to tautomerization of C4-oxidized gluco-oligosaccharides, which limits the use of this technique. Here, we describe the use of reverse phase-ultra high performance liquid chromatography (RP-UHPLC) in combination with non-reductive 2-aminobenzamide (2-AB) labeling. Non-reductive 2-AB labeling enabled separation of C4-oxidized gluco-oligosaccharides from their non-oxidized counterparts. Moreover, RP-UHPLC does not require buffered mobile phases, which reduce mass spectrometry (MS) sensitivity. The latter is seen as an advantage over other techniques such as hydrophilic interaction liquid chromatography and porous graphitized carbon coupled to MS. RP-UHPLC coupled to UV detection and mass spectrometry allowed the identification of both labeled non-oxidized and C4-oxidized oligosaccharides. Non-reductive labeling kept the ketone at the C4-position of LPMO oxidized oligosaccharides intact, while selective reducing agents such as sodium triacetoxyborohydride (STAB) reduced this ketone group. Our results show that RP-UHPLC-UV-ESI-MS in combination with non-reductively 2-AB labeling is a suitable technique for the separation and identification of LPMO-generated C4-oxidized gluco-oligosaccharides. [ABSTRACT FROM AUTHOR]

Biological wood oxidation (BWO) is a composting heat recovery system tailored for woody lignocellulose valorization, with the potential to generate sustainable and low-temperature heat. This study investigated the effects of feedstock particle sizing and periodic nutrient supplementation (PNS) on microbial activity and wood decomposition during BWO. Birch wood was processed into sawdust (<5 mm) and cubes of various diameters (5, 10, and 15 mm), incubated in batch-mode BWO reactors for 88 days, and periodically supplemented with a nutrient medium. Sawdust-BWO outperformed cubes-BWO and demonstrated greater sensitivity to PNS, exhibiting in total 207% higher cumulative oxygen consumption, 50%∼ higher nitrogen utilization efficiency, 217% higher wood dry matter (DM) loss, and 101% higher total carbohydrates removal. The use of human urine as a nutrient source, combined with sawdust and PNS, further enhanced the BWO performance and resulted in an unprecedented 34.2% DM loss and 45.5% total carbohydrate removal over a 60-day incubation period. As revealed by an overall energy balance analysis, the process of grinding wood cubes into sawdust consumes around 55–72 kWh/t DM of additional electricity but results in a potentially 10-fold increase in heat output (680.6–719.5 kWh/t DM). Hence, combining fine grinding of wood with PNS emerges as an effective and energy-efficient strategy to elevate the performance and heat generation potential of BWO. • Sawdust-size substrate significantly improved the biological wood oxidation (BWO). • The impact of periodic nutrient addition on BWO varied across substrate sizes. • Periodic human urine supply to sawdust-size BWO achieved 34.2% dry matter loss. • Grinding wood to sawdust may yield a net energy gain for upscaled BWO. [ABSTRACT FROM AUTHOR]

Dye-decolorizing peroxidases are heme peroxidases with a broad range of substrate specificity. Their physiological function is still largely unknown, but a role in the depolymerization of plant cell wall polymers has been widely proposed. Here, a new expression system for bacterial dye-decolorizing peroxidases as well as the activity with previously unexplored plant molecules are reported. The dye-decolorizing peroxidase from Amycolatopsis 75iv2 (DyP2) was heterologously produced in the Gram-positive bacterium Streptomyces lividans TK24 in both intracellular and extracellular forms without external heme supplementation. The enzyme was tested on a series of O-glycosides, which are plant secondary metabolites with a phenyl glycosidic linkage. O-glycosides are of great interest, both for studying the compounds themselves and as potential models for studying specific lignin-carbohydrate complexes. The primary DyP reaction products of salicin, arbutin, fraxin, naringin, rutin, and gossypin were oxidatively coupled oligomers. A cleavage of the glycone moiety upon radical polymerization was observed when using arbutin, fraxin, rutin, and gossypin as substrates. The amount of released glucose from arbutin and fraxin reached 23% and 3% of the total substrate, respectively. The proposed mechanism suggests a destabilization of the ether linkage due to the localization of the radical in the para position. In addition, DyP2 was tested on complex lignocellulosic materials such as wheat straw, spruce, willow, and puri fied water-soluble lignin fractions, but no remarkable changes in the carbohydrate pro file were observed, despite obvious oxidative activity. The exact action of DyP2 on such lignin-carbohydrate complexes therefore remains elusive. [ABSTRACT FROM AUTHOR]

Background: The white-rot fungi Ceriporiopsis subvermispora (Cs), Pleurotus eryngii (Pe), and Lentinula edodes (Le) have been shown to be high-potential species for selective delignification of plant biomass. This delignification improves polysaccharide degradability, which currently limits the efficient lignocellulose conversion into biochemicals, biofuels, and animal feed. Since selectivity and time efficiency of fungal delignification still need optimization, detailed understanding of the underlying mechanisms at molecular level is required. The recently developed methodologies for lignin quantification and characterization now allow for the in-depth mapping of fungal modification and degradation of lignin and, thereby, enable resolving underlying mechanisms. Results: Wheat straw treated by two strains of Cs (Cs1 and Cs12), Pe (Pe3 and Pe6) and Le (Le8 and Le10) was characterized using semi-quantitative py-GC–MS during fungal growth (1, 3, and 7 weeks). The remaining lignin after 7 weeks was quantified and characterized using 13C lignin internal standard based py-GC–MS and whole cell wall HSQC NMR. Strains of the same species showed similar patterns of lignin removal and degradation. Cs and Le outperformed Pe in terms of extent and selectivity of delignification (Cs ≥ Le >> Pe). The highest lignin removal [66% (w/w); Cs1] was obtained after 7 weeks, without extensive carbohydrate degradation (factor 3 increased carbohydrate-to-lignin ratio). Furthermore, though after treatment with Cs and Le comparable amounts of lignin remained, the structure of the residual lignin vastly differed. For example, Cα-oxidized substructures accumulated in Cs treated lignin up to 24% of the total aromatic lignin, a factor two higher than in Le-treated lignin. Contrarily, ferulic acid substructures were preferentially targeted by Le (and Pe). Interestingly, Pe-spent lignin was specifically depleted of tricin (40% reduction). The overall subunit composition (H:G:S) was not affected by fungal treatment. Conclusions: Cs and Le are both able to effectively and selectively delignify wheat straw, though the underlying mechanisms are fundamentally different. We are the first to identify that Cs degrades the major β-O-4 ether linkage in grass lignin mainly via Cβ–O–aryl cleavage, while Cα–Cβ cleavage of inter-unit linkages predominated for Le. Our research provides a new insight on how fungi degrade lignin, which contributes to further optimizing the biological upgrading of lignocellulose. [ABSTRACT FROM AUTHOR]

Highlights • LLA treatment of wheat straw results in high carbohydrate recovery. • LLA treatment of wheat straw decreases relative abundance of hydroxycinnamic acids. • Treatment time, together with NH 3 concentration, affects enzymatic hydrolysis. • Low NH 3 loadings loosen the lignocellulose architecture. Abstract Ammonia treatment of lignocellulose improves carbohydrate degradability, however, low ammonia dose treatment effects and mechanisms are hardly considered. This study describes low dose ammonia treatment of wheat straw in a statistical design of experiments (Taguchi design) to evaluate the effects of ammonia concentration, treatment time and the Solid:Liquid ratio on structure, composition and enzymatic degradability of the residual fractions. The results showed that low ammonia concentration (≤2 w/w % NH 3) resulted in a high carbohydrate recovery (>80%) coupled enzymatic hydrolysis of 50% of xylan and 40% of glucan of the treated material using a (hemi-) cellulase enzyme cocktail. This effect coincidences with the relative decrease in ferulic acid by 10% and coumaric acid by more than 50% analysed via pyrolysis-GC–MS, measured as 4-vinyl-phenol and 4-vinyl-guaiacol, respectively. Our findings show that lowering ammonia concentration increased the effect of treatment time on the enzymatic degradability of the residual fraction. [ABSTRACT FROM AUTHOR]

Fungi are main lignin degraders and the edible white button mushroom, Agaricus bisporus , inhabits lignocellulose-rich environments. Previous research hinted at delignification when A. bisporus colonized pre-composted wheat straw-based substrate in an industrial setting, assumed to aid subsequent release of monosaccharides from (hemi-)cellulose to form fruiting bodies. Yet, structural changes and specific quantification of lignin throughout A. bisporus mycelial growth remain largely unresolved. To elucidate A. bisporus routes of delignification, at six timepoints throughout mycelial growth (15 days), substrate was collected, fractionated, and analyzed by quantitative pyrolysis-GC–MS, 2D-HSQC NMR, and SEC. Lignin decrease was highest between day 6 and day 10 and reached in total 42 % (w/w). The substantial delignification was accompanied by extensive structural changes of residual lignin, including increased syringyl to guaiacyl (S/G) ratios, accumulated oxidized moieties, and depleted intact interunit linkages. Hydroxypropiovanillone and hydroxypropiosyringone (HPV/S) subunits accumulated, which are indicative for β-| O -4′ ether cleavage and imply a laccase-driven ligninolysis. We provide compelling evidence that A. bisporus is capable of extensive lignin removal, have obtained insights into mechanisms at play and susceptibilities of various substructures, thus we were contributing to understanding fungal lignin conversion. [Display omitted] • Agaricus bisporus removes lignin from pre-composted biomass during mycelial growth. • Structural changes indicate laccase-driven delignification. • Agaricus bisporus preferentially cleaves the lignin β- O -4 ether linkage via β- O. [ABSTRACT FROM AUTHOR]

Extraction of polyphenols from Centranthus longiflorus stems was conducted using ultrasound and infrared Ired-Irrad® techniques, and compared to the conventional water bath method. Response surface methodology was used to analyse the effect of time, temperature, and ethanol percentage, as well as to optimize the three extraction methods. The highest phenolic content (81 mg GAE/g DM) and antioxidant activity (76% DPPH inhibition) were recorded with the Ired-Irrad® extract obtained under the optimal conditions: 55 °C, 127 min, 48% (v/v) ethanol. Biological activities (antioxidant, antibacterial and antibiofilm) of the three extracts were assessed. All C. longiflorus stems extracts showed limited antibacterial effects regardless of the extraction method (MIC = 50 mg/mL), whereas Ired-Irrad® extract exhibited the highest biofilm eradication and prevention capacities (93% against Escherichia coli and 97% against Staphylococcus epidermidis, respectively). This bioactivity is likely related to abundant caffeoylquinic acid and quercetin rutinoside, as identified by RP-UHPLC-PDA-MS analysis. The results obtained further promote the effectiveness of Ired-Irrad® as a highly flexible and cost-efficient extraction technique. [ABSTRACT FROM AUTHOR]

[Display omitted] • Sc-CO 2 as pretreatment allows for retention of the lignin chemical structure. • Wheat straw pretreatment with sc-CO 2 enhances mild fractionation strategies. • A lignin solubilization of 91% is achieved with mild organosolv post sc-CO 2 pretreatment. • High conservation of the β-O-4 lignin structure is achieved in consecutive treatments. • Sc-CO 2 pretreatment enhances diluted acid carbohydrate fractionation. The efficient utilization of lignocellulosic biomass in biorefineries is pivotal for the transition to a carbon–neutral society, emphasizing the need for environmentally friendly fractionation techniques. While the extensive use of chemicals in biorefinery operations can yield favorable quantities of specific biomass components, adopting less chemically intense conditions is crucial for holistic methodologies that preserve the inherent potential of all biomass constituents. This study comprehensively investigates the use of supercritical carbon dioxide (sc-CO 2) as a green pretreatment to improve subsequent mild fractionation on wheat straw. Sc-CO 2 at 300 bars, 100 °C and 70% moisture was found to have minimal impact on the chemical composition and the lignin structure, while there were significant morphological changes as heightened surface area and reduced density. Apart from increasing enzymatic saccharification efficiency, the treatment notably enhanced subsequent mild delignification through alkaline and flow-through organosolv extractions. The combination of the pretreatments enhances the lignin solubilization yields from 49 to 79% for alkaline and 74 to 91% for organosolv extractions, while retaining a high β-O-4 conservation of 49 and 59 linkages per 100 aromatic units, respectively. Additionally, the combined use of sc-CO 2 with mild dilute acid pretreatment improved xylose solubilization from 59 to 76 % and enzymatic saccharification from 53 to 90%, albeit with increased lignin condensation. In summary, this study demonstrates the potential of sc-CO 2 pretreatment as a versatile tool for biomass valorization within the evolving bioeconomy, by combining enhanced extraction yields with minimal lignin structural impact. Our work thereby highlights the promise of the use of sc-CO 2 to contribute to the overall economic potential of improved biorefinery processes. [ABSTRACT FROM AUTHOR]

[Display omitted] • Sc-CO 2 as pretreatment allows for retention of the lignin chemical structure. • Wheat straw pretreatment with sc-CO 2 enhances mild fractionation strategies. • A lignin solubilization of 91% is achieved with mild organosolv post sc-CO 2 pretreatment. • High conservation of the β-O-4 lignin structure is achieved in consecutive treatments. • Sc-CO 2 pretreatment enhances diluted acid carbohydrate fractionation. The efficient utilization of lignocellulosic biomass in biorefineries is pivotal for the transition to a carbon–neutral society, emphasizing the need for environmentally friendly fractionation techniques. While the extensive use of chemicals in biorefinery operations can yield favorable quantities of specific biomass components, adopting less chemically intense conditions is crucial for holistic methodologies that preserve the inherent potential of all biomass constituents. This study comprehensively investigates the use of supercritical carbon dioxide (sc-CO 2) as a green pretreatment to improve subsequent mild fractionation on wheat straw. Sc-CO 2 at 300 bars, 100 °C and 70% moisture was found to have minimal impact on the chemical composition and the lignin structure, while there were significant morphological changes as heightened surface area and reduced density. Apart from increasing enzymatic saccharification efficiency, the treatment notably enhanced subsequent mild delignification through alkaline and flow-through organosolv extractions. The combination of the pretreatments enhances the lignin solubilization yields from 49 to 79% for alkaline and 74 to 91% for organosolv extractions, while retaining a high β-O-4 conservation of 49 and 59 linkages per 100 aromatic units, respectively. Additionally, the combined use of sc-CO 2 with mild dilute acid pretreatment improved xylose solubilization from 59 to 76 % and enzymatic saccharification from 53 to 90%, albeit with increased lignin condensation. In summary, this study demonstrates the potential of sc-CO 2 pretreatment as a versatile tool for biomass valorization within the evolving bioeconomy, by combining enhanced extraction yields with minimal lignin structural impact. Our work thereby highlights the promise of the use of sc-CO 2 to contribute to the overall economic potential of improved biorefinery processes. [ABSTRACT FROM AUTHOR]

Lignocellulosic crops are attractive bioresources for energy and chemicals production within a sustainable, carbon circular society. Miscanthus is one of the perennial grasses that exhibits great potential as a dedicated feedstock for conversion to biobased products in integrated biorefineries. The current biorefinery strategies are primarily focused on polysaccharide valorization and require severe pretreatments to overcome the lignin barrier. The need for such pretreatments represents an economic burden and impacts the overall sustainability of the biorefinery. Hence, increasing its efficiency has been a topic of great interest. Inversely, though pretreatment will remain an essential step, there is room to reduce its severity by optimizing the biomass composition rendering it more exploitable. Extensive studies have examined the miscanthus cell wall structures in great detail, and pinpointed those components that affect biomass digestibility under various pretreatments. Although lignin content has been identified as the most important factor limiting cell wall deconstruction, the effect of polysaccharides and interaction between the different constituents play an important role as well. The natural variation that is available within different miscanthus species and increased understanding of biosynthetic cell wall pathways have specified the potential to create novel accessions with improved digestibility through breeding or genetic modification. This review discusses the contribution of the main cell wall components on biomass degradation in relation to hydrothermal, dilute acid and alkaline pretreatments. Furthermore, traits worth advancing through breeding will be discussed in light of past, present and future breeding efforts. [ABSTRACT FROM AUTHOR]

BACKGROUND White rot fungi have been used to improve the nutritive value of lignocellulose for ruminants. In feed analysis, the Van Soest method is widely used to determine the cell wall contents. To assess the reliability of this method (Method A) for determination of cell wall contents in fungal‐treated wheat straw, we compared a combined monosaccharide analysis and pyrolysis coupled to gas chromatography with mass spectrometry (Py‐GC/MS) (Method B). Ruminal digestibility, measured as in vitro gas production (IVGP), was subsequently used to examine which method explains best the effect of fungal pretreatment on the digestibility of wheat straw. RESULTS: Both methods differed considerably in the mass recoveries of the individual cell wall components, which changed on how we assess their degradation characteristics. For example, Method B gave a higher degradation of lignin (61.9%), as compared to Method A (33.2%). Method A, however, showed a better correlation of IVGP with the ratio of lignin to total structural carbohydrates, as compared to Method B (Pearson's r of −0.84 versus −0.69). Nevertheless, Method B provides a more accurate quantification of lignin, reflecting its actual modification and degradation. With the information on the lignin structural features, Method B presents a substantial advantage in understanding the underlying mechanisms of lignin breakdown. Both methods, however, could not accurately quantify the cellulose contents – among others, due to interference of fungal biomass. CONCLUSION: Method A only accounts for the recalcitrant residue and therefore is more suitable for evaluating ruminal digestibility. Method B allows a more accurate quantification of cell wall, required to understand and better explains the actual modification of the cell wall. The suitability of both methods, therefore, depends on their intended purposes. © 2019 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. [ABSTRACT FROM AUTHOR]

• Techno-economic parameters of this pretreatment are presented. • Plant cell wall and composition of biomass are shown. • Environmental aspects of sustainability for hydrothermal are discuses. • Process design integration for hydrothermal pretreatment is presented. The development and sustainability of second-generation biorefineries are essential for the production of high added value compounds and biofuels and their application at the industrial level. Pretreatment is one of the most critical stages in biomass processing. In this specific case, hydrothermal pretreatments (liquid hot water [LHW] and steam explosion [SE]) are considered the most promising process for the fractionation, hydrolysis and structural modifications of biomass. This review focuses on architecture of the plant cell wall and composition, fundamentals of hydrothermal pretreatment, process design integration, the techno-economic parameters of the solubilization of lignocellulosic biomass (LCB) focused on the operational costs for large-scale process implementation and the global manufacturing cost. In addition, profitability indicators are evaluated between the value-added products generated during hydrothermal pretreatment, advocating a biorefinery implementation in a circular economy framework. In addition, this review includes an analysis of environmental aspects of sustainability involved in hydrothermal pretreatments. [ABSTRACT FROM AUTHOR]

• LPMO-generated C1- and C4-oxidised cello-oligomers have distinct MS/MS patterns. • C4-oxidised cello-oligomers showed B-/Y- and X-type fragments at the oxidised end. • Diagnostic 2,4X n fragments were obtained for C4-oxidised cello-oligomers. • Extensive A-type cleavage was typical for C1-oxidised cello-oligomers. • Reduced and non-reduced cello-oligomers yield distinct fragmentation behaviours. Lytic polysaccharide monooxygenases (LPMOs) are powerful enzymes that degrade recalcitrant polysaccharides, such as cellulose. However, the identification of LPMO-generated C1- and/or C4-oxidised oligosaccharides is far from straightforward. In particular, their fragmentation patterns have not been well established when using mass spectrometry. Hence, we studied the fragmentation behaviours of non-, C1- and C4-oxidised cello-oligosaccharides, including their sodium borodeuteride-reduced forms, by using hydrophilic interaction chromatography and negative ion mode collision induced dissociation - mass spectrometry. Non-oxidised cello-oligosaccharides showed predominantly C- and A-type cleavages. In comparison, C4-oxidised ones underwent B-/Y- and X-cleavage close to the oxidised non-reducing end, while closer to the reducing end C-/Z- and A-fragmentation predominated. C1-oxidised cello-oligosaccharides showed extensively A-cleavage. Reduced oligosaccharides showed predominant glycosidic bond cleavage, both B-/Y- and C-/Z-, close to the non-reducing end. Our findings provide signature mass spectrometric fragmentation patterns to unambiguously elucidate the catalytic behaviour and classification of LPMOs. [ABSTRACT FROM AUTHOR]