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Trachurus trachurus and Trachurus mediterraneus play an important role in the marine ecosystem and represent an important source of income for local economies related to fishery. This study aimed to improve the knowledge on the spatial distribution and habitat requirements of these two horse mackerels in the south-central Mediterranean Sea (Strait of Sicily) by applying specie distribution models. Species’ biomass HotSpots, areas where the highest abundances are concentrated, were modelled as a function of physical and oceanographic parameters. Predictive distribution maps were produced to identify species-specific spatial patterns and possible overlapping in the distribution areas of the two congeneric species. Depth, bottom salinity, bottom sea temperature, sea surface temperature variation and slope were the main drivers for horse mackerels habitat suitability. Predictive distribution maps revealed a clear spatial segregation between biomass HotSpots of the two species, which depends on complex abiotic and biotic relationships. Since horse mackerels are the main component of discards produced by deep rose shrimp fishery in the Strait of Sicily and due to the importance of discard reduction in the current fishery policies, the results can provide important information for setting up spatial-based management strategies for the Strait of Sicily fisheries aimed in particular at minimizing unwanted by-catches. [ABSTRACT FROM AUTHOR]