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The diversity and abundance of fish inhabiting complex reef habitats poses some challenges to surveys based on optical techniques, especially for schooling fish which are difficult to enumerate with such methods. Acoustic surveys are often used effectively to estimate the abundance and distribution of schooling fish but suffer from boundary effects and limited species discrimination.To reconcile these drawbacks, we present an integrated acoustic–optical survey method, to estimate the abundance of fishes in a subtropical reef habitat in Shark Bay, Western Australia, exploiting the unique benefits of each method.Acoustic backscatter attributed to multi‐species groups was partitioned to species with the help of concurrent unbaited remote underwater video. This allowed estimation of the abundance of the important fishery sparid, Chrysophrys auratus, as well as 17 other members of the diverse fish community.The study addresses some of the challenges of assessing abundance of fish species that may be aggregated, but sparsely distributed, associated with a structured habitat, and mixed within a diverse assemblage of other aggregating or solitary fishes in an area where direct capture fisheries survey gears cannot be used.Synthesis and applications. The acoustic–optical survey method provides data that are vital for the assessment of fish species in ecosystems which are difficult, or impossible for certain species, to survey with existing methods. These assessments are, in turn, essential for either ecosystem‐based fishery management or multiple single‐species quota management, which allow for the sustainable management of the associated fisheries. [ABSTRACT FROM AUTHOR]

Identification of the potential habitat of European anchovy ( Engraulis encrasicolus) at different life stages in relation to environmental conditions is an interesting subject from both ecological and management points of view. For this purpose, acoustic data from different seasons and different parts of the Mediterranean Sea along with satellite environmental and bathymetry data were modelled using generalized additive models. Similarly, egg distribution data from summer ichthyoplankton surveys were used to model potential spawning habitat. Selected models were used to produce maps presenting the probability of anchovy presence (adults, juveniles and eggs) in the entire Mediterranean basin, as a measure of habitat adequacy. Bottom depth and sea surface chlorophyll concentration were the variables found important in all models. Potential anchovy habitats were located over the continental shelf for all life stages examined. An expansion of the potential habitat from the peak spawning (early summer) to the late spawning season (early autumn) was observed. However, the most suitable areas for the presence of anchovy spawners seem to maintain the same size between seasons. Potential juvenile habitats were associated with highly productive inshore waters, being less extended and closer to coast during winter than late autumn. Potential spawning habitat in June and July based on ichthyoplankton surveys overlapped but were wider in extent compared with adult potential habitat from acoustics in the same season. Similarities and dissimilarities between the anchovy habitats as well as comparisons with sardine habitats in the oligotrophic Mediterranean Sea and other ecosystems with higher productivity are discussed. [ABSTRACT FROM AUTHOR]