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The snow leopard, Panthera uncia, is an elusive high-altitude specialist that inhabits vast, inaccessible habitat across Asia. We conducted the first range-wide genetic assessment of snow leopards based on noninvasive scat surveys. Thirty-three microsatellites were genotyped and a total of 683 bp of mitochondrial DNA sequenced in 70 individuals. Snow leopards exhibited low genetic diversity at microsatellites (AN = 5.8, HO = 0.433, HE = 0.568), virtually no mtDNA variation, and underwent a bottleneck in the Holocene (~8000 years ago) coinciding with increased temperatures, precipitation, and upward treeline shift in the Tibetan Plateau. Multiple analyses supported 3 primary genetic clusters: (1) Northern (the Altai region), (2) Central (core Himalaya and Tibetan Plateau), and (3) Western (Tian Shan, Pamir, trans-Himalaya regions). Accordingly, we recognize 3 subspecies, Panthera uncia irbis (Northern group), Panthera uncia uncia (Western group), and Panthera uncia uncioides (Central group) based upon genetic distinctness, low levels of admixture, unambiguous population assignment, and geographic separation. The patterns of variation were consistent with desert-basin "barrier effects" of the Gobi isolating the northern subspecies (Mongolia), and the trans-Himalaya dividing the central (Qinghai, Tibet, Bhutan, and Nepal) and western subspecies (India, Pakistan, Tajikistan, and Kyrgyzstan). Hierarchical Bayesian clustering analysis revealed additional subdivision into a minimum of 6 proposed management units: western Mongolia, southern Mongolia, Tian Shan, Pamir-Himalaya, Tibet-Himalaya, and Qinghai, with spatial autocorrelation suggesting potential connectivity by dispersing individuals up to ~400 km. We provide a foundation for global conservation of snow leopard subspecies, and set the stage for in-depth landscape genetics and genomic studies. [ABSTRACT FROM AUTHOR]

Taxus chinensis is a rare and endangered shrub, highly sensitive to temperature changes and widely known for its potential in cancer treatment. How gene expression of T. chinensis responds to low temperature is still unknown. To investigate cold response of the genus Taxus, we obtained the transcriptome profiles of T. chinensis grown under normal and low temperature (cold stress, 0°C) conditions using Illumina Miseq sequencing. A transcriptome including 83,963 transcripts and 62,654 genes were assembled from 4.16 Gb of reads data. Comparative transcriptomic analysis identified 2,025 differently expressed (DE) isoforms at p < 0.05, of which 1,437 were up-regulated by cold stress and 588 were down-regulated. Annotation of DE isoforms indicated that transcription factors (TFs) in the MAPK signaling pathway and TF families of NAC, WRKY, bZIP, MYB, and ERF were transcriptionally activated. This might have been caused by the accumulation of secondary messengers, such as reactive oxygen species (ROS) and Ca2+. While accumulation of ROS will have caused damages to cells, our results indicated that to adapt to low temperatures T. chinensis employed a series of mechanisms to minimize these damages. The mechanisms included: (i) cold-enhanced expression of ROS deoxidant systems, such as peroxidase and phospholipid hydroperoxide glutathione peroxidase, to remove ROS. This was further confirmed by analyses showing increased activity of POD, SOD, and CAT under cold stress. (ii) Activation of starch and sucrose metabolism, thiamine metabolism, and purine metabolism by cold-stress to produce metabolites which either protect cell organelles or lower the ROS content in cells. These processes are regulated by ROS signaling, as the "feedback" toward ROS accumulation. [ABSTRACT FROM AUTHOR]

The dhole ( Cuon alpinus), a canid, is categorized as Endangered (EN) on the IUCN Red List and is listed as a category II protected species in China. Presence-absence data are extremely rare in western China, and possible existence of remnant populations of dholes is not clear. Here, we document new records of dhole in a protected area in an arid region of the Altun Mountains in Xinjiang Autonomous Region in western China. From a total of 4517 camera-trap days at ten water sites between 2011 and 2013, we obtained seven independent records of dhole at three sites. Additionally, another reserve in Gansu Province which is located near Altun Mountains also recorded the species through camera-trap surveys. Our results indicate that dhole populations exist in the vast arid region of the Altun Mountains, and the current distribution of the dhole might be widespread in western China. We suggest that conservation efforts in this region should focus on minimizing the persecution and poaching of both dholes and their prey. [ABSTRACT FROM AUTHOR]

Background: Tropical rainforests cover over 50 % of all known plant and animal species and provide a variety of key resources and ecosystem services to humans, largely mediated by metabolic activities of soil microbial communities. A deep analysis of soil microbial communities and their roles in ecological processes would improve our understanding on biogeochemical elemental cycles. However, soil microbial functional gene diversity in tropical rainforests and causative factors remain unclear. GeoChip, contained almost all of the key functional genes related to biogeochemical cycles, could be used as a specific and sensitive tool for studying microbial gene diversity and metabolic potential. In this study, soil microbial functional gene diversity in tropical rainforest was analyzed by using GeoChip technology. Results: Gene categories detected in the tropical rainforest soils were related to different biogeochemical processes, such as carbon (C), nitrogen (N) and phosphorus (P) cycling. The relative abundance of genes related to C and P cycling detected mostly derived from the cultured bacteria. C degradation gene categories for substrates ranging from labile C to recalcitrant C were all detected, and gene abundances involved in many recalcitrant C degradation gene categories were significantly (P < 0.05) different among three sampling sites. The relative abundance of genes related to N cycling detected was significantly (P < 0.05) different, mostly derived from the uncultured bacteria. The gene categories related to ammonification had a high relative abundance. Both canonical correspondence analysis and multivariate regression tree analysis showed that soil available N was the most correlated with soil microbial functional gene structure. Conclusions: Overall high microbial functional gene diversity and different soil microbial metabolic potential for different biogeochemical processes were considered to exist in tropical rainforest. Soil available N could be the key factor in shaping the soil microbial functional gene structure and metabolic potential. [ABSTRACT FROM AUTHOR]

There are significant gaps in our knowledge of wild camel ecology; especially the activity patterns that allow them to adapt to desert environments. The wild Bactrian camel (Camelus bactrianus) is a critically endangered species that survives in the extreme desert conditions of Central Asia. We conducted camera trapping surveys at seven watering sites in the northern piedmont of the Altun Mountains from 2010 to 2012. We analyzed the frequency of photo-captures to elucidate the wild camels' diel activity patterns, and the seasonal variation in their activity at watering sites. We found that these wild camels were predominantly diurnal at watering sites, with an increase in relative activity from sunrise, reaching a peak toward midday, and then gradually decreasing in activity until sunset. The camels visited watering sites more often in winter than in summer. These results provide a guide for water development in the conservation of ungulates in arid areas. [ABSTRACT FROM AUTHOR]

Cornus elliptica is a species of the Cornus, an evergreen tree endemic to China. Here, we report a complete chloroplast genome sequence of C. elliptica. The chloroplast genome was found to be 157,400bp in length, and G-C contents were 38.1%. The sequence contained 115 unique genes, including 31 tRNA, 4 rRNA, and 80 protein-coding genes. Phylogenetic framework of Cornus is consistent with previous studies. [ABSTRACT FROM AUTHOR]

Background: GeoChip 3.0, a microbial functional gene array, containing ~28,000 oligonucleotide probes and targeting ~57,000 sequences from 292 functional gene families, provided a powerful tool for researching microbial community structure in natural environments. The alpine meadow is a dominant plant community in the Qinghai- Tibetan plateau, hence it is important to profile the unique geographical flora and assess the response of the microbial communities to environmental variables. In this study, Geochip 3.0 was employed to understand the microbial functional gene diversity and structure, and metabolic potential and the major environmental factors in shaping microbial communities structure of alpine meadow soil in Qinghai-Tibetan Plateau. Results: A total of 6143 microbial functional genes involved in carbon degradation, carbon fixation, methane oxidation and production, nitrogen cycling, phosphorus utilization, sulphur cycling, organic remediation, metal resistance, energy process and other category were detected in six soil samples and high diversity was observed. Interestingly, most of the detected genes associated with carbon degradation were derived from cultivated organisms. To identify major environmental factors in shaping microbial communities, Mantel test and CCA Statistical analyses were performed. The results indicated that altitude, C/N, pH and soil organic carbon were significantly (P < 0.05) correlated with the microbial functional structure and a total of 80.97% of the variation was significantly explained by altitude, C/N and pH. The C/N contributed 38.2% to microbial functional gene variation, which is in accordance with the hierarchical clustering of overall microbial functional genes. Conclusions: High overall functional genes and phylogenetic diversity of the alpine meadow soil microbial communities existed in the Qinghai-Tibetan Plateau. Most of the genes involved in carbon degradation were derived from characterized microbial groups. Microbial composition and structures variation were significantly impacted by local environmental conditions, and soil C/N is the most important factor to impact the microbial structure in alpine meadow in Qinghai-Tibetan plateau [ABSTRACT FROM AUTHOR]

Presents information on a study which determined the causes of the population decline of Przewalski's gazelle in Qinghai Lake, China. History of the discovery of Przewalski's gazelle; Methodology; Comparison of several gazelle populations around Qinghai Lake.

The article analyzes the genetic structure and phylogenetics of Alpha-synuclein as well as the factors for gene mutations, variable splicing to synuclein protein hydrophobicity and hydrophilicity, spatial structure and aggregation. Alpha-synuclein is predominantly expressed in brain tissues as a major component of Lewy bodies, the hallmark of Parkinson's disease. The article suggests that alpha-synuclein may contribute to Parkinson's disease formation and progression and its structure is influenced genetically and cytologically.