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Using airborne drones to monitor water quality in inland, transitional or coastal surface waters is an emerging research field. Airborne drones can fly under clouds at preferred times, capturing data at cm resolution, filling a significant gap between existing in situ, airborne and satellite remote sensing capabilities. Suitable drones and lightweight cameras are readily available on the market, whereas deriving water quality products from the captured image is not straightforward; vignetting effects, georeferencing, the dynamic nature and high light absorption efficiency of water, sun glint and sky glint effects require careful data processing. This paper presents the data processing workflow behind MapEO water, an end-to-end cloud-based solution that deals with the complexities of observing water surfaces and retrieves water-leaving reflectance and water quality products like turbidity and chlorophyll-a (Chl-a) concentration. MapEO water supports common camera types and performs a geometric and radiometric correction and subsequent conversion to reflectance and water quality products. This study shows validation results of water-leaving reflectance, turbidity and Chl-a maps derived using DJI Phantom 4 pro and MicaSense cameras for several lakes across Europe. Coefficients of determination values of 0.71 and 0.93 are obtained for turbidity and Chl-a, respectively. We conclude that airborne drone data has major potential to be embedded in operational monitoring programmes and can form useful links between satellite and in situ observations. [ABSTRACT FROM AUTHOR]

This study assesses the ability of a new active fluorometer, the LabSTAF, to diagnostically assess the physiology of freshwater cyanobacteria in a reservoir exhibiting annual blooms. Specifically, we analyse the correlation of relative cyanobacteria abundance with photosynthetic parameters derived from fluorescence light curves (FLCs) obtained using several combinations of excitation wavebands, photosystem II (PSII) excitation spectra and the emission ratio of 730 over 685 nm (Fo(730/685)) using excitation protocols with varying degrees of sensitivity to cyanobacteria and algae. FLCs using blue excitation (B) and green–orange–red (GOR) excitation wavebands capture physiology parameters of algae and cyanobacteria, respectively. The green–orange (GO) protocol, expected to have the best diagnostic properties for cyanobacteria, did not guarantee PSII saturation. PSII excitation spectra showed distinct response from cyanobacteria and algae, depending on spectral optimisation of the light dose. Fo(730/685), obtained using a combination of GOR excitation wavebands, Fo(GOR, 730/685), showed a significant correlation with the relative abundance of cyanobacteria (linear regression, p-value < 0.01, adjusted R2 = 0.42). We recommend using, in parallel, Fo(GOR, 730/685), PSII excitation spectra (appropriately optimised for cyanobacteria versus algae), and physiological parameters derived from the FLCs obtained with GOR and B protocols to assess the physiology of cyanobacteria and to ultimately predict their growth. Higher intensity LEDs (G and O) should be considered to reach PSII saturation to further increase diagnostic sensitivity to the cyanobacteria component of the community. [ABSTRACT FROM AUTHOR]

Water hyacinth (Pontederia crassipes, also known as Eichhornia crassipes) is a highly invasive aquatic macrophyte species, indigenous to Amazonia, Brazil and tropical South America. It was introduced to India in 1896 and has now become an environmental and social challenge throughout the country in community ponds, freshwater lakes, irrigation channels, rivers and most other surface waterbodies. Considering its large speed of propagation on the water surface under conducive conditions and the adverse impact the infesting weed has, constant monitoring is needed to aid civic bodies, governments and policy makers involved in remedial measures. The synoptic coverage provided by satellite imaging and other remote sensing practices make it convenient to find a solution using this type of data. While there is an established background for the practice of remote sensing in the detection of aquatic plants, the use of Synthetic Aperture Radar (SAR) has yet to be fully exploited in the detection of water hyacinth. This research focusses on detecting water hyacinth within Vembanad Lake, Kuttanad, India. Here, results show that the monitoring of water hyacinth has proven to be possible using Sentinel-1 SAR data. A quantitative analysis of detection performance is presented using traditional and state-of-the-art change detectors. Analysis of these more powerful detectors showed true positive detection ratings of ~95% with 0.1% false alarm, showing significantly greater positive detection ratings when compared to the more traditional detectors. We are therefore confident that water hyacinth can be monitored using SAR data provided the extent of the infestation is significantly larger than the resolution cell (bigger than a quarter of a hectare). [ABSTRACT FROM AUTHOR]

Compared to other methods to monitor and detect cyanobacteria in phytoplankton populations, fluorometry gives rapid, robust and reproducible results and can be used in situ. Fluorometers capable of providing biomass estimates and physiological information are not commonly optimized to target cyanobacteria. This study provides a detailed overview of the fluorescence kinetics of algal and cyanobacterial cultures to determine optimal optical configurations to target fluorescence mechanisms that are either common to all phytoplankton or diagnostic to cyanobacteria. We confirm that fluorescence excitation channels targeting both phycocyanin and chlorophyll a associated to the Photosystem II are required to induce the fluorescence responses of cyanobacteria. In addition, emission channels centered at 660, 685 and 730 nm allow better differentiation of the fluorescence response between algal and cyanobacterial cultures. Blue-green actinic light does not yield a robust fluorescence response in the cyanobacterial cultures and broadband actinic light should be preferred to assess the relation between ambient light and photosynthesis. Significant variability was observed in the fluorescence response from cyanobacteria to the intensity and duration of actinic light exposure, which needs to be taken into consideration in field measurements. [ABSTRACT FROM AUTHOR]

Cyanobacterial blooms are an increasing threat to water quality and global water security caused by the nutrient enrichment of freshwaters. There is also a broad consensus that blooms are increasing with global warming, but the impacts of other concomitant environmental changes, such as an increase in extreme rainfall events, may affect this response. One of the potential effects of high rainfall events on phytoplankton communities is greater loss of biomass through hydraulic flushing. Here we used a shallow lake mesocosm experiment to test the combined effects of: warming (ambient vs. +4°C increase), high rainfall (flushing) events (no events vs. seasonal events) and nutrient loading (eutrophic vs. hypertrophic) on total phytoplankton chlorophyll‐a and cyanobacterial abundance and composition. Our hypotheses were that: (a) total phytoplankton and cyanobacterial abundance would be higher in heated mesocosms; (b) the stimulatory effects of warming on cyanobacterial abundance would be enhanced in higher nutrient mesocosms, resulting in a synergistic interaction; (c) the recovery of biomass from flushing induced losses would be quicker in heated and nutrient‐enriched treatments, and during the growing season. The results supported the first and, in part, the third hypotheses: total phytoplankton and cyanobacterial abundance increased in heated mesocosms with an increase in common bloom‐forming taxa—Microcystis spp. and Dolichospermum spp. Recovery from flushing was slowest in the winter, but unaffected by warming or higher nutrient loading. Contrary to the second hypothesis, an antagonistic interaction between warming and nutrient enrichment was detected for both cyanobacteria and chlorophyll‐a demonstrating that ecological surprises can occur, dependent on the environmental context. While this study highlights the clear need to mitigate against global warming, oversimplification of global change effects on cyanobacteria should be avoided; stressor gradients and seasonal effects should be considered as important factors shaping the response. [ABSTRACT FROM AUTHOR]

Aim: The factors controlling macrophyte (aquatic plant) composition are complex, recent research having shown that the well‐studied effects of lake environmental factors (the so‐called "environmental filter") can be constrained by hydrological and landscape factors. We investigated the factors determining macrophyte composition in lakes over water body and catchment scales and the transferability of this pattern across lake types. Location: Almost 1,000 lakes distributed across Britain. Taxon: Lake macrophytes. Methods: Lakes were partitioned into five types based on subdivision of alkalinity and elevation gradients. Data from botanical surveys were used to compare the spatial turnover and nestedness components of beta diversity between lake types. The relative importance of lake environment (based on local physicochemical data), hydrology (e.g. lake and stream density), landscape (e.g. fragmentation indices, land cover) and spatial autocorrelation in explaining variation in macrophyte composition were derived from variance partitioning. Results: Species composition showed strong spatial structuring, suggestive of overland dispersal, enhanced by spatially correlated abiotic factors such as alkalinity and elevation. Catchment‐scale factors (e.g. land use, connectivity) promoted the establishment of different communities (more or less diverse, or differing in composition) but were of secondary importance. Turnover in composition between upland lakes was lower than in other lake types, reflecting a more specialist flora and increased potential for propagule exchange due to spatial aggregation and higher hydrological connectivity. Main conclusions: Vegetation composition in lakes is more spatially structured than previously appreciated, consistent with the importance of dispersal limitation, but this does not apply evenly to all lakes, being most acute in lowland high alkalinity lakes. Thus, spatially structured abiotic factors, such as alkalinity, influence macrophyte composition most (suggestive of niche filtering) in high alkalinity lakes where human impacts tend to be greatest, although nestedness was also lowest in such lakes. By contrast, hydrological connectivity has a proportionally stronger structuring role in upland lakes. [ABSTRACT FROM AUTHOR]

Abstract: Inland and coastal waterbodies are critical components of the global biosphere. Timely monitoring is necessary to enhance our understanding of their functions, the drivers impacting on these functions and to deliver more effective management. The ability to observe waterbodies from space has led to Earth observation (EO) becoming established as an important source of information on water quality and ecosystem condition. However, progress toward a globally valid EO approach is still largely hampered by inconsistences over temporally and spatially variable in‐water optical conditions. In this study, a comprehensive dataset from more than 250 aquatic systems, representing a wide range of conditions, was analyzed in order to develop a typology of optical water types (OWTs) for inland and coastal waters. We introduce a novel approach for clustering in situ hyperspectral water reflectance measurements (n = 4045) from multiple sources based on a functional data analysis. The resulting classification algorithm identified 13 spectrally distinct clusters of measurements in inland waters, and a further nine clusters from the marine environment. The distinction and characterization of OWTs was supported by the availability of a wide range of coincident data on biogeochemical and inherent optical properties from inland waters. Phylogenetic trees based on the shapes of cluster means were constructed to identify similarities among the derived clusters with respect to spectral diversity. This typification provides a valuable framework for a globally applicable EO scheme and the design of future EO missions. [ABSTRACT FROM AUTHOR]

Atmospheric correction of remotely sensed imagery of inland water bodies is essential to interpret water-leaving radiance signals and for the accurate retrieval of water quality variables. Atmospheric correction is particularly challenging over inhomogeneous water bodies surrounded by comparatively bright land surface. We present results of AisaFENIX airborne hyperspectral imagery collected over a small inland water body under changing cloud cover, presenting challenging but common conditions for atmospheric correction. This is the first evaluation of the performance of the FENIX sensor over water bodies. ATCOR4, which is not specifically designed for atmospheric correction over water and does not make any assumptions on water type, was used to obtain atmospherically corrected reflectance values, which were compared to in situ water-leaving reflectance collected at six stations. Three different atmospheric correction strategies in ATCOR4 was tested. The strategy using fully image-derived and spatially varying atmospheric parameters produced a reflectance accuracy of ±0.002, i.e., a difference of less than 15% compared to the in situ reference reflectance. Amplitude and shape of the remotely sensed reflectance spectra were in general accordance with the in situ data. The spectral angle was better than 4.1° for the best cases, in the spectral range of 450-750 nm. The retrieval of chlorophyll-a (Chl-a) concentration using a popular semi-analytical band ratio algorithm for turbid inland waters gave an accuracy of ~16% or 4.4 mg/m³ compared to retrieval of Chl-a from reflectance measured in situ. Using fixed ATCOR4 processing parameters for whole images improved Chl-a retrieval results from ~6 mg/m3 difference to reference to approximately 2 mg/m³. We conclude that the AisaFENIX sensor, in combination with ATCOR4 in image-driven parametrization, can be successfully used for inland water quality observations. This implies that the need for in situ reference measurements is not as strict as has been assumed and a high degree of automation in processing is possible. [ABSTRACT FROM AUTHOR]

Monitoring strategic agricultural crops in terms of crop growth performance, by accurate cost-effective and quick tools is crucially important in site-specific management to avoid crop reductions. The availability of commercial high resolution satellite images with high resolution (spatial and spectral) as well as in situ spectra measurements can help decision takers to have deep insight on crop stress in a certain region. The research attempts to examine remote sensing dataset for forecasting wheat crop (Sakha 61) characteristics including the leaf area index (LAI), plant height (plant-h), above ground biomass (AGB) and Soil Plant Analysis Development (SPAD) value of wheat across non-stress, drought and salinity-induced stress in the Nile Delta region. In this context, the ability of in situ spectroradiometry measurements and QuickBird high resolution images was evaluated in our research. The efficiency of Random Forest (RF) and Artificial Neural Network (ANN), mathematical models was assessed to estimate the four measured wheat characteristics based on vegetation spectral reflectance indices (V-SRIs) extracted from both approaches and their interactions. Field surveys were carried out to collect in situ spectroradiometry measurements concomitant with the acquisition of QuickBird imagery. The results demonstrated that several V-SRIs extracted from in situ spectroradiometry data and the QuickBird image correlated with the LAI, plant-h, AGB, and SPAD value of wheat crop across the study site. The determination coefficient (R2) values of the association between V-SRIs of in situ spectroradiometry data and various determined wheat characteristics varied from 0.26 to 0.85. The ANN-GSIs-3 was found to be the optimum predictive model, demonstrating a greater relationship between the advanced features and LAI. The three features of V-SRIs comprised in this model were strongly significant for the prediction of LAI. The attained results indicated high R2 values of 0.94 and 0.86 for the training and validation phases. The ANN-GSIs-3 model constructed for the determination of chlorophyll in the plant which had higher performance expectations (R2 = 0.96 and 0.92 for training and validation datasets, respectively). In conclusion, the results of our study revealed that high resolution remote sensing images such as QuickBird or similar imagery, and in situ spectroradiometry measurements have the feasibility of providing necessary crop monitoring data across non-stressed and stressed (drought and salinity) conditions when integrating V-SRIs with ANN and RF algorithms. [ABSTRACT FROM AUTHOR]

Mass populations of toxin-producing cyanobacteria commonly develop in fresh-, brackish- and marine waters and effective strategies for monitoring and managing cyanobacterial health risks are required to safeguard animal and human health. A multi-interdisciplinary study, including two UK freshwaters with a history of toxic cyanobacterial blooms, was undertaken to explore different approaches for the identification, monitoring and management of potentially-toxic cyanobacteria and their associated risks. The results demonstrate that (i) cyanobacterial bloom occurrence can be predicted at a local- and national-scale using process-based and statistical models; (ii) cyanobacterial concentration and distribution in waterbodies can be monitored using remote sensing, but minimum detection limits need to be evaluated; (iii) cyanotoxins may be transferred to spray-irrigated root crops; and (iv) attitudes and perceptions towards risks influence the public's preferences and willingness-to-pay for cyanobacterial health risk reductions in recreational waters. [ABSTRACT FROM AUTHOR]

Water quality measures for inland and coastal waters are available as discrete samples from professional and volunteer water quality monitoring programs and higher-frequency, near-continuous data from automated in situ sensors. Water quality parameters also are estimated from model outputs and remote sensing. The integration of these data, via data assimilation, can result in a more holistic characterization of these highly dynamic ecosystems, and consequently improve water resource management. It is becoming common to see combinations of these data applied to answer relevant scientific questions. Yet, methods for scaling water quality data across regions and beyond, to provide actionable knowledge for stakeholders, have emerged only recently, particularly with the availability of satellite data now providing global coverage at high spatial resolution. In this paper, data sources and existing data integration frameworks are reviewed to give an overview of the present status and identify the gaps in existing frameworks. We propose an integration framework to provide information to user communities through the the Group on Earth Observations (GEO) AquaWatch Initiative. This aims to develop and build the global capacity and utility of water quality data, products, and information to support equitable and inclusive access for water resource management, policy and decision making. [ABSTRACT FROM AUTHOR]

To date, several algorithms for the retrieval of cyanobacterial phycocyanin (PC) from ocean colour sensors have been presented for inland waters, all of which claim to be robust models. To address this, we conducted a comprehensive comparison to identify the optimal algorithm for retrieval of PC concentrations in the highly optically complex waters of Lake Balaton (Hungary). MEdium Resolution Imaging Spectrometer (MERIS) top-of-atmosphere radiances were first atmospherically corrected using the Self-Contained Atmospheric Parameters Estimation for MERIS data v.B2 (SCAPE-M_B2). Overall, the Simis05 semi-analytical algorithm outperformed more complex inversion algorithms, providing accurate estimates of PC up to ±7 days from the time of satellite overpass during summer cyanobacteria blooms (RMSElog < 0.33). Same-day retrieval of PC also showed good agreement with cyanobacteria biomass (R2 > 0.66, p < 0.001). In-depth analysis of the Simis05 algorithm using in situ measurements of inherent optical properties (IOPs) revealed that the Simis05 model overestimated the phytoplankton absorption coefficient [aph(λ)] by a factor of ~2. However, these errors were compensated for by underestimation of the mass-specific chlorophyll absorption coefficient [a*chla(λ)]. This study reinforces the need for further validation of algorithms over a range of optical water types in the context of the recently launched Ocean Land Colour Instrument (OLCI) onboard Sentinel-3. [ABSTRACT FROM AUTHOR]