1. Emticicia fluvialis sp. nov., a potential hormone-degrading bacterium isolated from Nakdong River, Republic of Korea.
- Author
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Baek, Hyun-Sun, Guan, Yong, Kim, Min-Ju, Jiang, Yue, Lee, Mi-Kyung, Kim, Ki-Hyun, Lee, Jaeyoon, Shin, Yuna, Kang, Yoon-Ho, and Li, Zhun
- Abstract
A novel species of the genus Emticicia, designated BHSR1
T , was isolated from a water sample that was collected from the Nakdong River, Republic of Korea, and its taxonomic affiliation was studied using a polyphasic approach. This bacterium was Gram-stain-negative, non-motile, aerobic, curved, rod-shaped, and oxidase- and catalase-negative. The bacterium grew optimally at 37 °C, pH 7.5 and 0% (w/v) NaCl. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain BHSR1T should be affiliated with the genus Emticicia, with a high similarity to Emticicia fontis KCTC 52248T (98.10%). Phylogenomic analysis also suggested that the strain represents a novel species in the genus Emticicia. The genomic G + C content was 41.9%. The average nucleotide identity, average amino acid identity and digital DNA–DNA hybridization between strain BHSR1T and its closely related relatives in the genus Emticicia were in ranges of 71.1–75.8%, 69.4–77.5% and 18.6–19.9%, respectively. The gene cluster within BHSR1T contained genes encoding enzymes that could be involved in hormone degradation. The major cellular fatty acids (> 10%) were summed feature 3 (comprising C16:1 ω6c and/or C16:1 ω7c) and iso-C15:0 . With regards to the polar lipid profile, phosphatidylethanolamine (PE), two unidentified aminolipids and three unidentified lipids were identified as the major compounds. The major respiratory quinone was menaquinone (MK)-7. Based on its phylogenetic, phenotypic, chemotaxonomic, and genomic features, strain BHSR1T should be considered a novel species in the genus Emticicia of the family Spirosomaceae, for which the name Emticicia fluvialis sp. nov. is proposed. The type strain was considered BHSR1T (= KCTC 92622T = GDMCC 1.3740T ). [ABSTRACT FROM AUTHOR]- Published
- 2023
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