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The polarimetry of the light scattered by planetary surfaces is a powerful tool to provide constraints on their microstructure. To improve the interpretation of polarimetric data from icy surfaces, we have developed the POLarimeter for ICE Samples complementing the measurement facilities of the Ice Laboratory at the University of Bern. The new setup uses a high precision Stokes polarimeter to measure the degree of polarization in the visible light scattered by surfaces at moderate phase angles (from 1.5° to 30°). We present the photometric and polarimetric phase curves measured on various surfaces made of pure water ice particles having well‐controlled size and shape (spherical, crushed, and frost). The results show how the amplitude and the shape of the negative polarization branch change with the particles sizes and the degree of metamorphism of the ice. We found that fresh frost formed by water condensation on cold surfaces has a phase curve characterized by resonances (Mie oscillations) indicating that frost embryos are transparent micrometer‐sized particles with a narrow size distribution and spherical shape. Comparisons of these measurements with polarimetric observations of the icy satellites of the Solar System suggest that Europa is possibly covered by relatively coarser (~40–400 μm) and more sintered grains than Enceladus and Rhea, more likely covered by frost‐like particles of few micrometers in average. The great sensitivity of polarization to grain size and degree of sintering makes it an ideal tool to detect hints of ongoing processes on icy planetary surfaces, such as cryovolcanism. Plain Language Summary: Light can be considered as an oscillating wave that propagates in space. When the light from the Sun is reflected by a planetary surface, the direction of its oscillation partially changes. The information about the direction of the oscillation is known as the polarization of the light. In this study, we show how the polarization of the visible light reflected by surfaces made of water ice grains changes with the size of these grains and the freshness of the ice surfaces. By comparing our results to astronomical observations, we find that the surface of Jupiter's moon Europa is possibly made of much larger ice grains (table salt size‐like) than the surfaces of Saturn's moons Enceladus and Rhea (finer than icing sugar). This striking difference is probably due to different environmental conditions transforming these surfaces. Key Points: Phase curves of the scattered light and degree of linear polarization were measured on surfaces of well‐characterized water ice particlesInfluences of ice particles size and degree of metamorphism on the phase curves are described; frost shows resonances (Mie oscillations)The laboratory data suggest average icy grains diameters possibly ~40–400 μm on Europa but only few micrometers on Enceladus and Rhea [ABSTRACT FROM AUTHOR]

Thanks to the availability of computational grids and their middleware, a seamless access to computation and storage resources is provided to application developers and scientists. The Décrypthon project is one example of such a high performance platform. In this paper, we present the architecture of the platform, the middleware developed to facilitate access to several servers deployed in France, and the data center for integrating large biological datasets over multiple sites, supported by a new query language and integration of various tools. The SM2PH project represents an example of a biological application that exploits the capacities of the Décrypthon grid. The goal of SM2PH is a better understanding of mutations involved in human monogenic diseases, their impact on the 3D structure of the protein and the subsequent consequences for the pathological phenotypes. [ABSTRACT FROM AUTHOR]

Rod-derived cone viability factor (RdCVF) is a thioredoxin-like protein, which has therapeutic potential for rod-cone dystrophies such as retinitis pigmentosa (RP). Cone loss in rodent models of RP is effectively reduced by RdCVF treatment. In this study, we investigate the physiological role of RdCVF in the retina by analyzing the phenotype of the mouse lacking the RdCVF gene, Nxnl1. Although the mice do not show an obvious developmental defect, an age-related reduction of both cone and rod function and a delay in the dark-adaptation of the retina are recorded by electroretinogram (ERG). This functional change is accompanied by a 17% reduction in cone density and a 20% reduction in thickness of the outer nuclear layer. The transcriptome of the retina reveals early changes in the expression of genes involved in programmed cell death, stress-response and redox-signaling, which is followed by a generalized injury response with increased microglial activation, GFAP, FGF2 and lipid peroxidation levels. Furthermore, cones of the mice lacking Nxnl1 are more sensitive to oxidative stress with a reduction of 65% in the cone flicker ERG amplitude measured under hyperoxic conditions. We show here that the RdCVF gene, in addition to therapeutic properties, has an essential role in photoreceptor maintenance and resistance to retinal oxidative stress. [ABSTRACT FROM AUTHOR]

Addiction develops from the gradual adaptation of the brain to chronic drug exposure, and involves genetic reprogramming of neuronal function. The central extended amygdala (EAc) is a network formed by the central amygdala and the bed nucleus of the stria terminalis. This key site controls drug craving and seeking behaviors, and has not been investigated at the gene regulation level. We used Affymetrix microarrays to analyze transcriptional activity in the murine EAc, with a focus on mu-opioid receptor-associated events because these receptors mediate drug reward and dependence. We identified 132 genes whose expression is regulated by a chronic escalating morphine regimen in the EAc from wild-type but not mu-opioid receptor knockout mice. These modifications are mostly EAc-specific. Gene ontology analysis reveals an overrepresentation of neurogenesis, cell growth and signaling protein categories. A separate quantitative PCR analysis of genes in the last of these groups confirms the dysregulation of both orphan ( Gpr88) and known ( DrD1A, Adora2A, Cnr1, Grm5, Gpr6) G protein-coupled receptors, scaffolding ( PSD95, Homer1) and signaling ( Sgk, Cap1) proteins, and neuropeptides ( CCK, galanin). These transcriptional modifications do not occur following a single morphine injection, and hence result from long-term adaptation to excessive mu receptor activation. Proteins encoded by these genes are classically associated with spine modules function in other brain areas, and therefore our data suggest a remodeling of EAc circuits at sites where glutamatergic and monoaminergic afferences interact. Together, mu receptor-dependent genes identified in this study potentially contribute to drug-induced neural plasticity, and provide a unique molecular repertoire towards understanding drug craving and relapse. [ABSTRACT FROM AUTHOR]

The lateral hypothalamus (LH) is a brain structure that controls hedonic properties of both natural rewards and drugs of abuse. Mu opioid receptors are known to mediate drug reward, but whether overstimulation of these receptors impacts on LH function has not been studied. Here we have used a genome-wide microarray approach to identify LH responses to chronic mu opioid receptor activation at the transcriptional level. We have subjected wild-type and mu opioid receptor knockout mice to an escalating morphine regimen, which produces severe physical dependence in wild-type but not mutant animals. We have analyzed gene profiles in LH samples using the 430A.2 Affymetrix array and identified a set of 25 genes whose expression is altered by morphine in wild-type mice only. The regulation was confirmed for a subset of these genes using real-time quantitative PCR on samples from independent treatments. Altered expression of aquaporin 4, apolipoprotein D, and prostaglandin synthase is indicative of modified LH physiology. The regulation of two signaling genes (the serum glucocorticoid kinase and the regulator of G protein signaling 4) suggests that neurotransmission is altered in LH circuitry. Finally, the downregulation of apelin may indicate a potential role for this neuropeptide in opioid signaling and hedonic homeostasis. Altogether, our study shows that chronic mu opioid receptor stimulation induces gene expression plasticity in the LH and provides a unique collection of mu opioid receptor-dependent genes that potentially contribute to alter reward processes in addictive diseases. [ABSTRACT FROM AUTHOR]

Head and neck squamous cell carcinoma (HNSCC) is common worldwide and is associated with a poor rate of survival. Identification of new markers and therapeutic targets, and understanding the complex transformation process, will require a comprehensive description of genome expression, that can only be achieved by combining different methodologies. We report here the HNSCC transcriptome that was determined by exhaustive differential display (DD) analysis coupled with validation by different methods on the same patient samples. The resulting 820 nonredundant sequences were analysed by high throughput bioinformatics analysis. Human proteins were identified for 73% (596) of the DD sequences. A large proportion (>50%) of the remaining unassigned sequences match ESTs (expressed sequence tags) from human tumours. For the functionally annotated proteins, there is significant enrichment for relevant biological processes, including cell motility, protein biosynthesis, stress and immune responses, cell death, cell cycle, cell proliferation and/or maintenance and transport. Three of the novel proteins (TMEM16A, PHLDB2 and ARHGAP21) were analysed further to show that they have the potential to be developed as therapeutic targets.Oncogene (2006) 25, 1821–1831. doi:10.1038/sj.onc.1209203; published online 31 October 2005 [ABSTRACT FROM AUTHOR]

PIAS proteins, cytokine-dependent STAT-associated repressors, exhibit intrinsic E3-type SUMO ligase activities and form a family of transcriptional modulators. Three conserved domains have been identified so far in this protein family, the SAP box, the MIZ-Zn finger/RING module and the acidic C-terminal domain, which are essential for protein interactions, DNA binding or SUMO ligase activity. We have identified a novel conserved domain of 180 residues in PIAS proteins and shown that its ‘PINIT’ motif as well as other conserved motifs (in the SAP box and in the RING domain) are independently involved in nuclear retention of PIAS3L, the long form of PIAS3, that we have characterized in mouse embryonic stem cells. [Copyright &y& Elsevier]

Due to its abundance and unique properties, water is a major actor in the formation and evolution of many planetary surfaces as well as a sensitive and reliable tracer of past geologic and climatic processes. Water ice is found in variable abundance at the surfaces of many Solar System objects, from the floor of permanently shadowed craters at the poles of Mercury to large fractions of the surfaces of several trans-Neptunian objects. With few exceptions, water is not found in pure form but associated to contaminants of various nature and concentration. These associations and the nature of the mixing and segregation processes that affect and control them are key for our understanding of some of the most important aspects of planetary evolution processes. The observation and characterization of water ice at the surface of Solar System objects is therefore among the primary scientific objectives of many space missions. The quantitative interpretation of remote sensing data in terms of surface composition and physical properties requires the use of complex physical models that rely on experimental data in two different ways. First, the models require as inputs the fundamental properties of the pure materials, such as the optical or dielectric constant. Second, the models can only be fully tested if their results are confronted to actual measurements performed on samples whose complexity comes close to the one encountered on natural planetary surfaces but which are nevertheless well-enough characterized to serve as reference. Such measurements are challenging as macroscopic ice-rich samples prepared as analogues of icy planetary surfaces tend to be unstable, the ice component being prone to metamorphism and phase change. The questions of the reproducibility of the samples and the relevance of the measurements are therefore critical. The Ice Laboratory at the University of Bern has been set up in 2010 to overcome some of these difficulties. We have developed protocols to prepare, store, handle and characterize various associations of ice with mineral and organics contaminants as analogues of different types of icy Solar System surfaces. The aims of this article are to present the context and background for our investigations, describe these protocols and associated hardware in a comprehensive way, provide quantitative characterization of the samples obtained using these protocols and summarize the main results obtained so far by experimenting with these samples. The current state and possible future evolutions of this project are then discussed in the context of the next generation of space missions to visit icy objects in the Solar System and longer term perspectives on future observations of protoplanetary discs and exoplanetary systems. [ABSTRACT FROM AUTHOR]