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Peanuts play a crucial role as an oil crop, serving not only as a primary source of edible oil but also offering ample protein and vitamins for human consumption. The lateral branch angle of peanuts is the angle between the main stem and the first pair of lateral branches, which is an important agronomic trait of peanuts, significantly impacts the peg penetration into the soil, plant growth, and pod yield. It is closely intertwined with planting density, cultivation techniques, andmechanized harvesting methods. Therefore, the lateral branch angle holds substantial importance in enhancing peanut yield and facilitating mechanization. In order to conduct indepth research on the lateral branch angle of peanuts, this research is grounded in the QTL mapping findings, specifically focusing on the QTL qGH associated with the lateral branch angle of peanuts located on chromosome B05 (142610834-146688220). By using Jihua 5 and PZ42 for backcrossing, a BC1F2 population comprising 8000 individual plants was established. Molecular markers were then developed to screen the offspring plants, recombine individual plants, conduct fine mapping. he results showed that using the phenotype and genotype of 464 recombinant individual plants selected from 8000 offspring, narrow down the localization interval to 48kb, and designate it as qLBA. The gene Arahy.C4FM6Y, responsible for the F-Box protein, was identified within qLBA through screening. Real-time quantitative detection of Arahy.C4FM6Y was carried out using M130 and Jihua 5, revealing that the expression level of Arahy.C4FM6Y at the junction of the main stem and the first lateral branch of peanuts was lower in M130 compared to Jihua 5 during the growth period of the first lateral branch from 1 to 10 centimeters. Consequently, Arahy.C4FM6Y emerges as a gene that restrains the increase in the angle of the first lateral branch in peanuts. This investigation offers novel genetic reservoirs for peanut plant type breeding and furnishes a theoretical foundation for molecular marker-assisted peanut breeding. [ABSTRACT FROM AUTHOR]

Peanuts play a crucial role as an oil crop, serving not only as a primary source of edible oil but also offering ample protein and vitamins for human consumption. The lateral branch angle of peanuts is the angle between the main stem and the first pair of lateral branches, which is an important agronomic trait of peanuts, significantly impacts the peg penetration into the soil, plant growth, and pod yield. It is closely intertwined with planting density, cultivation techniques, andmechanized harvesting methods. Therefore, the lateral branch angle holds substantial importance in enhancing peanut yield and facilitating mechanization. In order to conduct indepth research on the lateral branch angle of peanuts, this research is grounded in the QTL mapping findings, specifically focusing on the QTL qGH associated with the lateral branch angle of peanuts located on chromosome B05 (142610834-146688220). By using Jihua 5 and PZ42 for backcrossing, a BC1F2 population comprising 8000 individual plants was established. Molecular markers were then developed to screen the offspring plants, recombine individual plants, conduct fine mapping. he results showed that using the phenotype and genotype of 464 recombinant individual plants selected from 8000 offspring, narrow down the localization interval to 48kb, and designate it as qLBA. The gene Arahy.C4FM6Y, responsible for the F-Box protein, was identified within qLBA through screening. Real-time quantitative detection of Arahy.C4FM6Y was carried out using M130 and Jihua 5, revealing that the expression level of Arahy.C4FM6Y at the junction of the main stem and the first lateral branch of peanuts was lower in M130 compared to Jihua 5 during the growth period of the first lateral branch from 1 to 10 centimeters. Consequently, Arahy.C4FM6Y emerges as a gene that restrains the increase in the angle of the first lateral branch in peanuts. This investigation offers novel genetic reservoirs for peanut plant type breeding and furnishes a theoretical foundation for molecular marker-assisted peanut breeding. [ABSTRACT FROM AUTHOR]

The WRKY transcription factor (TF) belongs to one of the major plant protein superfamilies. The WRKY TF gene family plays an important role in the regulation of transcriptional reprogramming associated with plant stress responses. Change in the expression patterns of WRKY genes or the modifications in their action; participate in the elaboration of numerous signaling pathways and regulatory networks. WRKY proteins contribute to plant growth, for example, gamete formation, seed germination, post-germination growth, stem elongation, root hair growth, leaf senescence, flowering time, and plant height. Moreover, they play a key role in many types of environmental signals, including drought, temperature, salinity, cold, and biotic stresses. This review summarizes the current progress made in unraveling the functions of numerous WRKY TFs under drought, salinity, temperature, and cold stresses as well as their role in plant growth and development. [ABSTRACT FROM AUTHOR]

Despite pitch being considered the primary cue for discriminating lexical tones, there are secondary cues such as loudness contour and duration, which may allow some cochlear implant (CI) tone discrimination even with severely degraded pitch cues. To isolate pitch cues from other cues, we developed a new disyllabic word stimulus set (Di) whose primary (pitch) and secondary (loudness) cue varied independently. This Di set consists of 270 disyllabic words, each having a distinctmeaning depending on the perceived tone. Thus, listeners who hear the primary pitch cue clearly may hear a different meaning from listeners who struggle with the pitch cue and must rely on the secondary loudness contour. A lexical tone recognition experiment was conducted, which compared Di with a monosyllabic set of natural recordings. Seventeen CI users and eight normal-hearing (NH) listeners took part in the experiment. Results showed that CI users had poorer pitch cues encoding and their tone recognition performance was significantly influenced by the “missing” or “confusing” secondary cues with the Di corpus. The pitch-contour-based tone recognition is still far from satisfactory for CI users compared to NH listeners, even if some appear to integratemultiple cues to achieve high scores. This disyllabic corpus could be used to examine the performance of pitch recognition of CI users and the effectiveness of pitch cue enhancement based Mandarin tone enhancement strategies. [ABSTRACT FROM AUTHOR]

The glutathione S-transferase (GST) gene resists stress-induced toxins and is widely expressed in eukaryotes. The role of a novel GST gene (HaGSTp1) in disease resistance in sunflower (Helianthus annuus L.) was investigated using the transcriptome library data of Sclerotina sclerotiorum (Lib.) de Bary-infected sunflower cultivar 'LSK-2' and cloned. The full length of HaGSTp1 is 639 bp. It encodes 212 amino acids, has a molecular weight of 52.4 kDa, has an isoelectric point of 5.16, and is classified into the Phi class of the GST gene. The GSH binding site (G site) and substrate-specific binding site (H site) are located at the N and C terminal domains, respectively. The tissue expression pattern demonstrated that the HaGSTp1 gene is mainly expressed in leaf tissues of sunflower and is induced by S. sclerotiorum, oxalic acid, salicylic acid, abscisic acid, and hydrogen peroxide. Transformation of the HaGSTp1 gene into tobacco (Nicotiana tabacum L.) increased the activity of GST and glutathione peroxidase by approximately twofold. All these data indicated potential enhancement of plant disease resistance potency by the HaGSTp1 gene. [ABSTRACT FROM AUTHOR]

Temporal envelope-based signal processing strategies are widely used in cochlear-implant (CI) systems. It is well recognized that the inability to convey temporal fine structure (TFS) in the stimuli limits CI users' performance, but it is still unclear how to effectively deliver the TFS. A strategy known as the temporal limits encoder (TLE), which employs an approach to derive the amplitude modulator to generate the stimuli coded in an interleaved-sampling strategy, has recently been proposed. The TLE modulator contains information related to the original temporal envelope and a slow-varying TFS from the band signal. In this paper, theoretical analyses are presented to demonstrate the superiority of TLE compared with two existing strategies, the clinically available continuous-interleaved- sampling (CIS) strategy and the experimental harmonic-single-sideband-encoder strategy. Perceptual experiments with vocoder simulations in normal-hearing listeners are conducted to compare the performance of TLE and CIS on two tasks (i.e., Mandarin speech reception in babble noise and tone recognition in quiet). The performance of the TLE modulator is mostly better than (for most tone-band vocoders) or comparable to (for noise-band vocoders) the CIS modulator on both tasks. This work implies that there is some potential for improving the representation of TFS with CIs by using a TLE strategy. [ABSTRACT FROM AUTHOR]

Satellite remote sensing data that lacks spatial resolution and timeliness is of limited ability to access urban thermal environment on a micro scale. This paper presents an unmanned airship low-altitude thermal infrared remote sensing system (UALTIRSS), which is composed of an unmanned airship, an onboard control and navigation subsystem, a task subsystem, a communication subsystem, and a ground-base station. Furthermore, an experimental method and an airborne-field experiment for collecting land surface temperature (LST) were designed and conducted. The LST pattern within 0.8-m spatial resolution and with root mean square error (RMSE) value of 2.63 °C was achieved and analyzed in the study region. Finally, the effects of surface types on the surrounding thermal environment were analyzed by LST profiles. Results show that the high thermal resolution imagery obtained from UALTIRSS can provide more detailed thermal information, which are conducive to classify fine urban material and assess surface urban heat island (SUHI). There is a significant positive correlation between the average LST of profiles and the percent impervious surface area (ISA%) with R² around 0.917. Overall, UALTIRSS and the retrieval method were proved to be low-cost and feasible for studying micro urban thermal environments. [ABSTRACT FROM AUTHOR]

This study investigated a fundamental aspect of thermoelastic martensitic transformations in different shape memory alloys by means of interrupted thermal analysis technique using differential scanning calorimetry (DSC). The objective of this study was to determine the true transformation temperature interval. It also provides the opportunity to further the discussion of time dependence of the transformations. The study applied a technique of thermal arrest amidst phase transformations. The transformation temperature intervals were found to be 8.4 and 12.9 K for the forward and reverse B2↔B19' martensitic transformation in a near-equiatomic Ti-50.2 at.% Ni alloy and 14.7 and 12.8 K in a Ni-rich Ti-50.8 at.% Ni alloy and 7.3 and 9.1 K for the L21↔orthorhombic transformation in a Ni43Co7Mn39In11 alloy. These values were significantly smaller than those commonly reported in the literature. The experimental evidences also demonstrated that the apparent time dependences of the martensitic transformations manifested in DSC analysis were artifacts caused by instrumental thermal inertia. [ABSTRACT FROM AUTHOR]

DNA sequencing by synthesis (SBS) on a solid surface during polymerase reaction can decipher many sequences in parallel. We report here a DNA sequencing method that is a hybrid between the Sanger dideoxynucleotide terminating reaction and SBS. In this approach, four nucleotides, modified as reversible terminators by capping the 3′-OH with a small reversible moiety so that they are still recognized by DNA polymerase as substrates, are combined with four cleavable fluorescent dideoxynucleotides to perform SBS. The ratio of the two sets of nucleotides is adjusted as the extension cycles proceed. Sequences are determined by the unique fluorescence emission of each fluorophore on the DNA products terminated by ddNTPs. On removing the 3′-OH capping group from the DNA products generated by incorporating the 3′-O-modified dNTPs and the fluorophore from the DNA products terminated with the ddNTPs, the polymerase reaction reinitiates to continue the sequence determination. By using an azidomethyl group as a chemically reversible capping moiety in the 3′-O-modified dNTPs, and an azido-based cleavable linker to attach the fluorophores to the ddNTPs, we synthesized four 3′-O-azidomethyl-dNTPs and four ddNTP-azidolinker-fluorophores for the hybrid SBS. After sequence determination by fluorescence imaging, the 3′-O-azidomethyl group and the fluorophore attached to the DNA extension product via the azidolinker are efficiently removed by using Tris(2-carboxyethyl)phosphine in aqueous solution that is compatible with DNA. Various DNA templates, including those with homopolymer regions, were accurately sequenced with a read length of >30 bases by using this hybrid SBS method on a chip and a four-color fluorescence scanner. [ABSTRACT FROM AUTHOR]

Pyrosequencing is a method used to sequence DNA by detecting the pyrophosphate (PPi) group that is generated when a nucleotide is incorporated into the growing DNA strand in polymerase reaction. However, this method has an inherent difficulty in accurately deciphering the homopolymeric regions of the DNA templates. We report here the development of a method to solve this problem by using nucleotide reversible terminators. These nucleotide analogues are modified with a reversible chemical moiety capping the 3′-OH group to temporarily terminate the polymerase reaction. In this way, only one nucleotide is incorporated into the growing DNA strand even in homopolymeric regions. After detection of the PPi for sequence determination, the 3′-OH of the primer extension products is regenerated through different deprotection methods. Using an allyl or a 2-nitrobenzyl group as the reversible moiety to cap the 3′-OH of the four nucleotides, we have synthesized two sets of 3′-O-modified nucleotides, 3′-O-allyl-dNTPs and 3′-O-(2-nitrobenzyl)-dNTPs as reversible terminators for pyrosequencing. The capping moiety on the 3′-OH of the DNA extension product is efficiently removed after PPi detection by either a chemical method or photolysis. To sequence DNA, templates containing homopolymeric regions are immobilized on Sepharose beads, and then extension—signal detection—deprotection cycles are conducted by using the nucleotide reversible terminators on the DNA beads to unambiguously decipher the sequence of DNA templates. Our results establish that this reversible-terminator-pyrosequencing approach can be potentially developed into a powerful methodology to accurately determine DNA sequences. [ABSTRACT FROM AUTHOR]

DNA sequencing by synthesis (SBS) on a solid surface during polymerase reaction offers a paradigm to decipher DNA sequences. We report here the construction of such a DNA sequencing system using molecular engineering approaches. In this approach, four nucleotides (A, C, G, T) are modified as reversible terminators by attaching a cleavable fluorophore to the base and capping the 3′-OH group with a small chemically reversible moiety so that they are still recognized by DNA polymerase as substrates. We found that an allyl moiety can be used successfully as a linker to tether a fluorophore to 3′-O-allyl-modified nucleotides, forming chemically cleavable fluorescent nucleotide reversible terminators, 3′-O-aIlyl-dNTPs-allyl-fluorophore, for application in SBS. The fluorophore and the 3′-O-aIlyl group on a DNA extension product, which is generated by incorporating 3′-O-allyl-dNTPs-allyl-fluorophore in a polymerase reaction, are removed simultaneously in 30 s by Pd-catalyzed deallylation in aqueous buffer solution. This one-step dual-deallylation reaction thus allows the reinitiation of the polymerase reaction and increases the SBS efficiency. DNA templates consisting of homopolymer regions were accurately sequenced by using this class of fluorescent nucleotide analogues on a DNA chip and a four-color fluorescent scanner. [ABSTRACT FROM AUTHOR]

We report four-color DNA sequencing by synthesis (SBS) on a chip, using four photocleavable fluorescent nucleotide analogues (dGTP-PC-Bodipy-FL-510, dUTP-PC-R6G, dATP-PC-ROX, and dCTP- PC-Bodipy-650) (PC, photocleavable; Bodipy, 4,4-difIuoro-4-bora-3α,4α-diaza-s-indacene; ROX, 6-carboxy-X-rhodamine; R6G, 6-carboxyrhodamine-6G). Each nucleotide analogue consists of a different fluorophore attached to the 5 position of the pyrimidines and the 7 position of the purines through a photocleavable 2-nitrobenzyl linker. After verifying that these nucleotides could be successfully incorporated into a growing DNA strand in a solution-phase polymerase reaction and the fluorophore could be cleaved using laser irradiation (≈355 nm) in 10 sec. we then performed an SBS reaction on a chip that contains a self-priming DNA template covalently immobilized by using 1,3-dipolar azide-alkyne cycloaddition. The DNA template was produced by PCR, using an azido-labeled primer, and the self-priming moiety was attached to the immobilized DNA template by enzymatic ligation. Each cycle of SBS consists of the incorporation of the photocleavable fluorescent nucleotide into the DNA, detection of the fluorescent signal, and photocleavage of the fluorophore. The entire process was repeated to identify 12 continuous bases in the DNA template. These results demonstrate that photocleavable fluorescent nucleotide analogues can be incorporated accurately into a growing DNA strand during a polymerase reaction in solution and on a chip. Moreover, all four fluorophores can be detected and then efficiently cleaved using near-UV irradiation, thereby allowing continuous identification of the DNA template sequence. Optimization of the steps involved in this SBS approach will further increase the read-length. [ABSTRACT FROM AUTHOR]

Fusarium head blight (FHB) is a worldwide devastating disease of wheat, caused primarily by species in the Fusarium graminearum (Fg) complex. In this study, we obtained 55 Fusarium isolates from wheat with FHB collected from seven provinces along the north of the Yangtze River. One additional phylogenetic species of Fg complex, Fusarium meridionale, was identified for the first time from China in addition to two known ones, Fusarium asiaticum and F.  graminearum. In addition, Fusarium acuminatum, distantly related to Fg complex, was for the first time identified in Northern China. Sensitivities of these isolates to carbendazim were examined and appeared to vary both within and between species. Mycotoxin genotype analyses indicated that F.  asiaticum isolates were potential 3-AcDON and NIV mycotoxin producers, while all F.  graminearum isolates might be 15-AcDON producers. These findings would provide useful information for developing management strategies for the control of FHB in Northern China. [ABSTRACT FROM AUTHOR]

Joule heating of NiTi shape memory alloy wires is a commonly applied technique for heat treatment and shape setting in many applications. Another innovative use of this method is to produce functionally graded NiTi. In this study, NiTi wires with spatially varied shape memory characteristics along the length were created by electrical resistance over-aging of a Ni-rich superelastic NiTi alloy. The stress–strain behaviour of such wires exhibited some new and unique characteristics during the stress-induced martensitic transformation, including two discrete stress plateaus, stress serration during transition between the two stress plateaus and an arch-shaped stress plateau in the over-aged section. These unique features have direct implications to design using NiTi alloys and the underlying mechanisms are explained in this study. [ABSTRACT FROM AUTHOR]