1. BAT2 and BAT3 polymorphisms as novel genetic risk factors for rejection after HLA-related SCT.
- Author
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Piras, I S, Angius, A, Andreani, M, Testi, M, Lucarelli, G, Floris, M, Marktel, S, Ciceri, F, Nasa, G La, Fleischhauer, K, Roncarolo, M G, Bulfone, A, Gregori, S, and Bacchetta, R
- Subjects
SINGLE nucleotide polymorphisms ,GRAFT rejection ,HEMATOPOIETIC stem cell transplantation ,HLA histocompatibility antigens ,IMMUNOGENETICS - Abstract
The genetic background of donor and recipient is an important factor determining the outcome of allogeneic hematopoietic SCT (allo-HSCT). We applied whole-genome analysis to investigate genetic variants-other than HLA class I and II-associated with negative outcome after HLA-identical sibling allo-HSCT in a cohort of 110 β-Thalassemic patients. We identified two single-nucleotide polymorphisms (SNPs) in BAT2 (A/G) and BAT3 (T/C) genes, SNP rs11538264 and SNP rs10484558, both located in the HLA class III region, in strong linkage disequilibrium between each other (R
2 =0.92). When considered as single SNP, none of them reached a significant association with graft rejection (nominal P<0.00001 for BAT2 SNP rs11538264, and P<0.0001 for BAT3 SNP rs10484558), whereas the BAT2/BAT3 A/C haplotype was present at significantly higher frequency in patients who rejected as compared to those with functional graft (30.0% vs 2.6%, nominal P=1.15 × 10−8 ; and adjusted P=0.0071). The BAT2/BAT3 polymorphisms and specifically the A/C haplotype may represent a novel immunogenetic factor associated with graft rejection in patients undergoing allo-HSCT. [ABSTRACT FROM AUTHOR]- Published
- 2014
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