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Photorespiration (PR) is the pathway that detoxifies the product of the oxygenation reaction of Rubisco. It has been hypothesized that in dynamic light environments, PR provides a photoprotective function. To test this hypothesis, we characterized plants with varying PR enzyme activities under fluctuating and non-fluctuating light conditions. Contrasting our expectations, growth of mutants with decreased PR enzyme levels was least affected in fluctuating light compared with wild type. Results for growth, photosynthesis and metabolites combined with thermodynamics-based flux analysis revealed two main causal factors for this unanticipated finding: reduced rates of photosynthesis in fluctuating light and complex re-routing of metabolic fluxes. Only in non-fluctuating light, mutants lacking the glutamate:glyoxylate aminotransferase 1 re-routed glycolate processing to the chloroplast, resulting in photooxidative damage through H2O2 production. Our results reveal that dynamic light environments buffer plant growth and metabolism against photorespiratory perturbations. The detoxification pathway photorespiration has been thought to be photoprotective in dynamic light. The authors report that, instead, growth in dynamic light buffers plants against photorespiratory lesions by reducing photosynthesis and inducing metabolite re-routing. [ABSTRACT FROM AUTHOR]

Identical location transmission electron microscopy (IL-TEM) is a powerful technique that has previously been used to study degradation of catalyst materials for proton exchange membrane fuel cells (PEMFCs) in half-cell environments. Here, we demonstrate that IL-TEM can be used to follow degradation at the top of the catalytic Pt/C layer in a real PEMFC on the atomic scale under operation. We find that during an accelerated stress test (AST), mimicking normal operation, Pt nanoparticles grow mainly by Ostwald ripening, while the carbon support is stable. Under AST mimicking start-up/shutdown conditions, the carbon support degrades mainly by loss of volume and collapse, which forces the Pt nanoparticles closer, promoting additional particle growth. The observed degradation correlates with the measured decrease in electrochemical performance for the respective AST. The results show the feasibility of performing IL-TEM imaging in PEMFCs under real-operating conditions, opening up the possibility for similar studies in other fully operational systems. [ABSTRACT FROM AUTHOR]

Metabolite-level regulation of enzyme activity is important for microbes to cope with environmental shifts. Knowledge of such regulations can also guide strain engineering for biotechnology. Here we apply limited proteolysis-small molecule mapping (LiP-SMap) to identify and compare metabolite-protein interactions in the proteomes of two cyanobacteria and two lithoautotrophic bacteria that fix CO2 using the Calvin cycle. Clustering analysis of the hundreds of detected interactions shows that some metabolites interact in a species-specific manner. We estimate that approximately 35% of interacting metabolites affect enzyme activity in vitro, and the effect is often minor. Using LiP-SMap data as a guide, we find that the Calvin cycle intermediate glyceraldehyde-3-phosphate enhances activity of fructose-1,6/sedoheptulose-1,7-bisphosphatase (F/SBPase) from Synechocystis sp. PCC 6803 and Cupriavidus necator in reducing conditions, suggesting a convergent feed-forward activation of the cycle. In oxidizing conditions, glyceraldehyde-3-phosphate inhibits Synechocystis F/SBPase by promoting enzyme aggregation. In contrast, the glycolytic intermediate glucose-6-phosphate activates F/SBPase from Cupriavidus necator but not F/SBPase from Synechocystis. Thus, metabolite-level regulation of the Calvin cycle is more prevalent than previously appreciated. A proteolysis-coupled mass spectrometry analysis is used to examine metabolite-protein interaction in cyanobacteria and finds that the regulation exerted by metabolites on the Calvin cycle is more numerous than previously thought. [ABSTRACT FROM AUTHOR]

Palladium supported on ceria (Pd/CeO2) has recently raised strong interest as an alternative catalyst to platinum on the anode electrode in anion exchange membrane fuel cells. Herein, we provide new insight into the enhanced activity of Pd/CeO2 in hydrogen oxidation reaction (HOR) in alkaline media. Using well-defined model thin films, we show that Pd/CeO2 thin films lead to enhanced activity in HOR compared to pure Pd thin films. In situ characterization using electrochemical quartz crystal microbalance provide in-depth understanding of the role of CeO2. CeO2 leads to fundamental differences in adsorption and absorption of key reaction intermediates during HOR. In combination with characterization and theoretical calculations, Pd atoms embedded in CeO2 are shown to be present on the prepared thin films and active for hydrogen activation but are not able to bind CO during CO-stripping characterization. Finally, an estimation of the source of hydroxyl intermediates provided by CeO2 – which could be directly participating in the reaction – is presented herein. Fundamental understanding of the Pd–CeO2 interface in HOR opens new ways to reduce the amount of noble metals in alkaline fuel cells. [ABSTRACT FROM AUTHOR]

Platinum (Pt) is a widely used electrocatalyst material in fuel cells and electrolysers. Proton exchange membrane (PEM) fuel cells and electrolysis operate under highly acidic conditions whereas the more recently developed anion exchange membrane (AEM) processes take place under alkaline conditions. Pt dissolution and Pt oxidation during operation and varying potentials has been studied mainly for the acidic PEM and less for the alkaline AEM. This study presents a comparison of Pt dissolution and Pt oxidation in 0.5 M H2SO4 and 1 M KOH using electrochemical quartz crystal microbalance (EQCM) on Pt thin films. Physical characterisation using electron microscopy and atomic force microscopy (AFM) revealed small, yet significant differences in the Pt film surface structure, which is related to differences in measured electrochemical surface area (ECSA). The mass increase from adsorption of oxygenated species and Pt oxidation is higher in alkaline conditions compared to in acid while dissolution of Pt is similar. [ABSTRACT FROM AUTHOR]

Secrets of secreted proteins: Although proteins that are actively secreted from cells constitute a large proportion of the targets of pharmaceutical drugs, we lack a complete understanding of the size and composition of this group of proteins, collectively referred to as the human "secretome." Uhlén et al. analyzed the genes of the Human Protein Atlas that encode proteins that are predicted to be secreted and combined this with data derived from antibody- and mass spectrometry–based analyses of the relative abundances, sites of origin, and final locations of proteins within the body. Their analysis suggests that many proteins that were thought to be secreted are retained intracellularly, and that another group of secreted proteins are retained locally rather than being released into the blood. These data serve as a resource for future research on this important class of proteins. The proteins secreted by human cells (collectively referred to as the secretome) are important not only for the basic understanding of human biology but also for the identification of potential targets for future diagnostics and therapies. Here, we present a comprehensive analysis of proteins predicted to be secreted in human cells, which provides information about their final localization in the human body, including the proteins actively secreted to peripheral blood. The analysis suggests that a large number of the proteins of the secretome are not secreted out of the cell, but instead are retained intracellularly, whereas another large group of proteins were identified that are predicted to be retained locally at the tissue of expression and not secreted into the blood. Proteins detected in the human blood by mass spectrometry–based proteomics and antibody-based immunoassays are also presented with estimates of their concentrations in the blood. The results are presented in an updated version 19 of the Human Protein Atlas in which each gene encoding a secretome protein is annotated to provide an open-access knowledge resource of the human secretome, including body-wide expression data, spatial localization data down to the single-cell and subcellular levels, and data about the presence of proteins that are detectable in the blood. [ABSTRACT FROM AUTHOR]

Electrochemical quartz-crystal microbalance, Electrochemistry, Platinum, Platinum dissolution, Platinum oxide growth Keywords: Electrochemical quartz-crystal microbalance; Electrochemistry; Platinum; Platinum dissolution; Platinum oxide growth EN Electrochemical quartz-crystal microbalance Electrochemistry Platinum Platinum dissolution Platinum oxide growth 1 1 1 11/29/22 20221125 NES 221125 B The Cover Feature b illustrates the mass change of a Pt thin film measured during oxygen adsorption/desorption and Pt dissolution during electrochemical cycling in alkaline conditions. [Extracted from the article]

Simple Summary: Pyruvate kinase muscle type (PKM) is a key enzyme in glycolysis and is a mediator of the Warburg effect in tumors. The association of PKM with survival of cancer patients is controversial. In this study, we investigated the associations of the alternatively spliced transcripts of PKM with cancer patients' survival outcomes and explained the conflicts in previous studies. We discovered three poorly studied alternatively spliced PKM transcripts that exhibited opposite prognostic indications in different human cancers based on integrative systems analysis. We also detected their protein products and explored their potential biological functions based on in-vitro experiments. Our analysis demonstrated that alternatively spliced transcripts of not only PKM but also other genes should be considered in cancer studies, since it may enable the discovery and targeting of the right protein product for development of the efficient treatment strategies. Pyruvate kinase muscle type (PKM) is a key enzyme in glycolysis and plays an important oncological role in cancer. However, the association of PKM expression and the survival outcome of patients with different cancers is controversial. We employed systems biology methods to reveal prognostic value and potential biological functions of PKM transcripts in different human cancers. Protein products of transcripts were shown and detected by western blot and mass spectrometry analysis. We focused on different transcripts of PKM and investigated the associations between their mRNA expression and the clinical survival of the patients in 25 different cancers. We find that the transcripts encoding PKM2 and three previously unstudied transcripts, namely ENST00000389093, ENST00000568883, and ENST00000561609, exhibited opposite prognostic indications in different cancers. Moreover, we validated the prognostic effect of these transcripts in an independent kidney cancer cohort. Finally, we revealed that ENST00000389093 and ENST00000568883 possess pyruvate kinase enzymatic activity and may have functional roles in metabolism, cell invasion, and hypoxia response in cancer cells. Our study provided a potential explanation to the controversial prognostic indication of PKM, and could invoke future studies focusing on revealing the biological and oncological roles of these alternative spliced variants of PKM. [ABSTRACT FROM AUTHOR]