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Abstract Soil microbial growth, a vital biogeochemical process, governs both the accrual and loss of soil carbon. Here, we investigate the biogeography of soil microbiome potential growth rates and show that microbiomes in resource-rich (high organic matter and nutrients) and acid-neutral soils from cold and humid regions exhibit high potential growth. Conversely, in resource-poor, dry, hot, and hypersaline soils, soil microbiomes display lower potential growth rates, suggesting trade-offs between growth and resource acquisition or stress tolerance. In addition, the potential growth rates of soil microbiomes positively correlates with genome size and the number of ribosomal RNA operons but negatively correlates with optimum temperature, biomass carbon-to-phosphorus and nitrogen-to-phosphorus ratios. The spatial variation of microbial potential growth rates aligns with several macroecological theories. These findings not only enhance our understanding of microbial adaptation to diverse environments but also aid in realistically parameterizing microbial physiology in soil carbon cycling models.

Abstract Understanding the large-scale pattern of soil microbial carbon use efficiency (CUE) and its temperature sensitivity (CUET) is critical for understanding soil carbon–climate feedback. We used the 18O-H2O tracer method to quantify CUE and CUET along a north-south forest transect. Climate was the primary factor that affected CUE and CUET, predominantly through direct pathways, then by altering soil properties, carbon fractions, microbial structure and functions. Negative CUET (CUE decreases with measuring temperature) in cold forests (mean annual temperature lower than 10 °C) and positive CUET (CUE increases with measuring temperature) in warm forests (mean annual temperature greater than 10 °C) suggest that microbial CUE optimally operates at their adapted temperature. Overall, the plasticity of microbial CUE and its temperature sensitivity alter the feedback of soil carbon to climate warming; that is, a climate-adaptive microbial community has the capacity to reduce carbon loss from soil matrices under corresponding favorable climate conditions.

Abstract Soil organic carbon (SOC) persistence is predominantly governed by mineral protection, consequently, soil mineral-associated (MAOC) and particulate organic carbon (POC) turnovers have different impacts on the vulnerability of SOC to climate change. Here, we generate the global MAOC and POC maps using 8341 observations and then infer the turnover times of MAOC and POC by a data-model integration approach. Global MAOC and POC storages are $${975}_{964}^{987}$$ 975 964 987 Pg C (mean with 5% and 95% quantiles) and $${330}_{323}^{337}$$ 330 323 337 Pg C, while global mean MAOC and POC turnover times are $${129}_{45}^{383}$$ 129 45 383 yr and $${23}_{5}^{82}$$ 23 5 82 yr in the top meter, respectively. Climate warming-induced acceleration of MAOC and POC decomposition is greater in subsoil than that in topsoil. Overall, the global atlas of MAOC and POC turnover, together with the global distributions of MAOC and POC stocks, provide a benchmark for Earth system models to diagnose SOC-climate change feedback.

The life strategies of bacterial communities determine their structure and function and are an important driver of biogeochemical cycling. However, the variations in these strategies under different soil resource conditions remain largely unknown. We explored the bacterial life strategies and changes in structure and functions between Antarctic soils and forest (temperate, subtropical, and tropical) soils. The results showed that the weighted mean rRNA operon copy number in temperate soils was 19.5% lower than that in Antarctic soils, whereas no significant differences were observed among Antarctic, subtropical, and tropical soils. An unexpected result was that bacterial communities in Antarctic soils tended to be copiotrophs, such as Actinobacteriota and Bacteroidota, whereas those in temperate soils tended to be oligotrophs, such as Acidobacteriota and Chloroflexi. Functional predictions showed that in comparison to copiotrophs in Antarctic soils, temperate-inhabiting oligotrophic bacteria exhibited an 84.2–91.1% lower abundance of labile C decomposition genes (hemicellulose, cellulose, monosaccharides, and disaccharides), whereas a 74.4% higher abundance of stable C decomposition (lignin). Genes involved in N cycling (nitrogen fixation, assimilatory nitrate reduction, and denitrification) were 24.3–64.4% lower in temperate soils than in Antarctic soils. Collectively, our study provides a framework for describing the life strategies of soil bacteria, which are crucial to global biogeochemical cycles.

IntroductionMicroorganisms regulate soil nitrogen (N) cycling in cropping systems. However, how soil microbial functional genes involved in soil N cycling respond to mulching practices is not well known.MethodsWe collected soil samples from a spring maize field mulched with crop straw (SM) and plastic film (FM) for 10-year and with no mulching (CK) in the Loess Plateau. Microbial functional genes involved in soil N cycling were quantified using metagenomic sequencing. We collected soil samples from a spring maize field mulched with crop straw (SM) and plastic film (FM) for 10-year and with no mulching (CK) in the Loess Plateau. Microbial functional genes involved in soil N cycling were quantified using metagenomic sequencing.ResultsCompared to that in CK, the total abundance of genes involved in soil N cycling increased in SM but had no significant changes in FM. Specifically, SM increased the abundances of functional genes that involved in dissimilatory nitrate reduction to ammonium (nirB, napA, and nrfA), while FM decreased the abundances of functional genes that involved in ammonification (ureC and ureA) in comparison with CK. Other genes involved in assimilatory nitrate reduction, denitrification, and ammonia assimilation, however, were not significantly changed with mulching practices. The nirB and napA were derived from Proteobacteria (mainly Sorangium), and the ureC was derived from Actinobacteria (mainly Streptomyces). Mental test showed that the abundance of functional genes that involved in dissimilatory nitrate reduction was positively correlated with the contents of soil microbial biomass N, potential N mineralization, particulate organic N, and C fractions, while ammonification related gene abundance was positively correlated with soil pH, microbial biomass C and N, and mineral N contents.DiscussionOverall, this study showed that SM could improve soil N availability and promote the soil N cycling by increasing the abundance of functional genes that involved in DNRA, while FM reduced the abundance of functional genes that involved in ammonification and inhibited soil N cycling.

Summary: Microbes play an integral role in forest soil phosphorus (P) cycling. However, the variation of microbial P-cycling functional genes and their controlling factors in forest soils is unclearly. We used metagenomics to investigate changes in the abundance of genes involved in P-starvation response regulation, P-uptake and transport, and P-solubilization and mineralization along the five elevational gradients. Our results showed the abundance of three P cycling gene groups increasing along the elevational gradient. Acidobacteria and Proteobacteria were the dominant microbial phyla determining the turnover of soil P-solubilization and immobilization. Along the elevational gradient, soil substrates are the major factor explaining variation in P-starvation response regulation genes. Soil environment is the main driver of P-uptake and transport and P-solubilization and mineralization genes. This study provided insights into the regulation of P-cycling from a microbial functional profile perspective, highlighting the importance of substrate and environmental factors for P-cycling genes in forest soils.

Soil nitrogen cycling microbial communities and functional gene α−diversity indicate soil nitrogen cycling ecological functions and potentials. Crop rotation plans affect soil nitrogen fractions and these indicators. We sequenced soil samples from four crop rotation plans (fallow, winter wheat monoculture, pea-winter wheat-winter wheat-millet rotation, and corn-wheat-wheat-millet rotation) in a long-term field experiment. We examined how microbial communities and functional gene α−diversity changed with soil nitrogen fractions and how nitrogen fractions regulated them. Planting crops increased the abundance and richness of nitrogen cycling key functional genes and bacterial communities compared with fallow. The abundance and richness correlated positively with nitrogen fractions, while Shannon index did not. The abundance increased with soil total nitrogen (STN) and potential nitrogen mineralization (PNM), while Shannon index showed that nitrogen cycling key functional genes increased and then decreased with increasing STN and PON. Introducing legumes into the rotation improved the α−diversity of nitrogen cycling key functional genes. These results can guide sustainable agriculture in the Loess Plateau and clarify the relationship between nitrogen fractions and nitrogen cycling key functional genes.

Fertilizer sources may have variable effects on soil aggregation, aggregated-associated C and N, and wheat yield. A 34-year field experiment was performed to evaluate the influences of chemical and organic fertilization on soil aggregates and associated carbon and nitrogen under winter wheat in a Cumulic Haplustoll of the Loess Plateau, China. Treatments included unfertilized control (CK), inorganic N fertilizer (NF), inorganic P fertilizer (PF), inorganic N and P fertilizer (NP), organic manure (M), inorganic N fertilizer plus manure (NM), inorganic P fertilizer plus manure (PM), and inorganic N plus P fertilizers plus manure (NPM). Compared to CK, long-term fertilization significantly increased the proportion of soil macro-aggregates, mean weight diameter (MWD), and geometric mean diameter (GMD), but decreased the proportion of micro-aggregates and fractal dimension, especially fertilizer plus manure. Compared to CK, manure treatments (M, NM, PM, and NPM) had a better improvement on soil organic carbon (SOC), soil total nitrogen (STN), particle organic C, and microbial biomass C in all aggregates than the fertilizer alone. The SOC in different aggregates increased with the increased aggregate size, which was because the larger aggregates formed by the binding of the smaller aggregates and organic matter. PON increased in NM and NPM, and MBN was more sensitive to N fertilizer. The C/N ratio in bulk soil and aggregates decreased with fertilization, especially in fertilizer with manure and in macro-aggregates. The improved soil structure was related to the increased SOC and STN, which was proved by the positive correlations among SOC and STN with macro-aggregates and MWD. A correlation analysis also showed that the contribution rate of SOC and STN in macro-aggregates was positively associated with the macro-aggregate and stability. Therefore, the sequestration of C and N in soil was related to aggregate size and was mainly affected by larger aggregates. The results demonstrated that fertilizer with manure improved the soil structure and fertility better than fertilizer alone, thus increasing crop yield.

Fertilization changes nitrogen (N)-cycling processes and associated microbial communities in agricultural ecosystems. However, the long-term responses of N-cycling potential and microbial functional genes to different fertilization sources remain unclear. Soil samples were collected to a depth of 20 cm under winter wheat applied annually with N fertilizer (NF), organic manure (OM), N fertilizer plus organic manure (NM), and a control without fertilization (CK) for 35 yr, and they were analyzed for microbial functional genes involved in soil N cycling using metagenome sequencing in the Loess Plateau of China. Soil N fractions were greater with OM and NM than NF and CK. The total abundances of N-cycling genes were 9.3% (p < 0.05) greater with NM than CK, and 8.2% (p < 0.05) and 12.2% (p < 0.01) higher with OM and NM than NF, respectively. Compared to CK, OM and NM increased the abundance of genes associated with nitrification, denitrification, dissimilatory nitrate reduction, and assimilatory nitrate reduction, but decreased the abundance of genes related to organic N metabolism. However, NF increased the abundance of genes involved in nitrification. Both OM and NM also enhanced the relative abundance of Proteobacteria carrying N-cycling genes but reduced those of Firmicutes and Cyanobacteria. Soil organic carbon, total N, and potential carbon mineralization were the dominant factors affecting the abundances of N-cycling genes. Long-term application of OM and NM can promote N cycling by enhancing gene abundance due to increased soil organic matter and microbial biomass compared to NF and CK.

The stoichiometry of efficient soil microbial carbon use is a sensitive index for measuring changes in soil quality and plays a crucial role in research on ecological stoichiometry in the soil nutrient cycle. To further understand the effect of feldspathic sandstone and sand compound ratios on microbial carbon use efficiency (CUE), we simulated the field conditions of the feldspathic sandstone-sand compound layer in the Mu Us sandy land and analyzed the soil C:N:P ratio, microbial biomass, extracellular enzyme activity, and microbial carbon use efficiency in soils with different compound ratios. The results demonstrated that an increase in the feldspathic sandstone content had insignificant effects on the soil C:N:P ratio. The maximum values for microbial biomass nitrogen (MBN) and microbial biomass phosphorus (MBP) were observed at compound ratios of 1:5 and 1:2, respectively. Calculations of microbial carbon use efficiency and vector analysis revealed that the microbial carbon use efficiency increased as the feldspathic sandstone content increased, P limitation existed in all compound soils, and soil with a 1:1 compound ratio may be substantially less limited. In conclusion, our research indicated that adding feldspathic sandstone to sand improved soil quality, and the compound ratio affected soil microorganisms; nevertheless, it did not significantly change soil nutrient restriction. Our study provides a theoretical basis for the development and utilization of desert land resources.

Elevational gradients strongly affect microbial biodiversity in bulk soil through altering plant and soil properties, but the effects on rhizosphere microbial patterns remain unclear, especially at large spatial scales. We therefore designed an elevational gradient experiment to examine rhizosphere microbial (bacteria, fungi and arbuscular mycorrhizal fungi) diversity and composition using Illumina sequencing of the 16S rRNA and ITS genes for comparison to plant and soil properties. Our results showed that bacterial and fungal alpha diversity was significantly higher at mid-elevation, while AMF alpha diversity decreased monotonically. The beta diversities of the three groups were significantly affected by elevational gradients, but the effect on bacterial beta diversity was larger than on fungal and AMF beta diversity. Proteobacteria, the dominant phyla of bacteria, was significantly higher at the mid-elevation, while Acidobacteria and Actinobacteria significantly decreased as elevation increased. The main fungal taxa, Basidiomycota, significantly decreased with elevation, and Ascomycota significantly increased with elevation. Glomeromycota, the dominant AMF phyla, responded insignificantly to the elevational gradients. The responses of bacterial and fungal alpha diversity were mostly associated with tree diversity and organic carbon, whereas AMF alpha diversity mainly depended on litter N and P. Changes in bacterial community composition along the elevational gradient were explained primarily by litter N and P, and litter P was the main driver of fungal and AMF community composition. Overall, our results suggest that plant litter, particularly litter N and P, were the main source of external carbon input and drove the observed differences in rhizosphere microbial diversity and community composition. Our results highlight the importance of litter nutrition in structuring rhizosphere microbial communities in mountain ecosystems.

Straw mulching has been widely adopted in dryland cropping but its effect on soil respiration and microbial communities under warming are not well understood. Soil samples were collected from a corn field with straw mulching (SM) for nine years and without straw mulching (CK), and incubated at 15°C, 25°C, and 35°C for 60 days. Soil respiration, C fractions and bacterial and fungal community structure were measured SM had greater soil organic carbon and potential C mineralization and a similar microbial biomass carbon throughout the incubation when compared with CK. Soil respiration increased with increasing temperature and its temperature sensitivity (Q10) was lower with SM than CK. Similar microbial community composition was found in the soils with SM and CK before incubation. However, SM had a greater bacterial richness and the relative abundances of Proteobacteria, Acidobacteria, Nitrospirae, Planctomycetes, Bacteroidetes, and Basidiomycota, but lower relative abundances of Actinobacteria, Chloroflexi, and Ascomycota than CK after incubation. Bacterial richness and diversity were greater at 15°C and 25°C than 35°C, but there was no difference in fungal richness and diversity among the incubation temperatures. As temperature increased, the relative abundances of Chloroflexi, Acidobacteria, and Bacteroidetes decreased, but Gemmatimonadetes and Ascomycota increased, and were significantly correlated with soil C fractions and respiration. These findings indicated that the effect of straw mulching on soil C cycling and microbial community structure can be highly modified by increasing temperature.

Microbial biomass, extracellular enzyme activity, and their stoichiometry in soil play an important role in ecosystem dynamics and functioning. To better understand the improvement of sand soil quality and the limitation of soil nutrients after adding feldspathic sandstone, we investigated changes in soil microbial activity after 10 months of mixing feldspathic sandstone and sand, and compared the dynamics with soil properties. We used fumigation extraction to determine soil microbial biomass carbon (MBC), nitrogen (MBN), phosphorus (MBP), and microplate fluorometric techniques to measure soil β-1,4-glucosidase (BG), β-1,4-xylosidase (BX), β-D-cellobiohydrolase (CBH), N-acetyl-β-glucosaminidase (NAG), and Alkaline phosphatase (AKP). We also measured soil organic carbon (SOC), pH, electrical conductivity (EC), soil inorganic carbon (SIC), and soil water content (SWC). Our results showed that the soil microbial biomass C, N, P, and individual extracellular enzyme activities significantly increased in mixed soil. Similarly, the soil microbial biomass C:N, C:P, N:P, MBC:SOC, and BG:NAG significantly increased by 54.3%, 106.3%, 33.1%, 23.0%, and 65.4%, respectively. However, BG:AKP and NAG:AKP decreased by 19.0% and 50.3%, respectively. Additionally, redundancy analysis (RDA) and Pearson’s correlation analysis showed that SWC, SOC, porosity and field capacity were significantly associated with soil microbial biomass indices (i.e., C, N, P, C:N, C:P, N:P in microbial biomass, and MBC:SOC) and extracellular enzyme activity metrics (i.e., individual enzyme activity, ecoenzymatic stoichiometry, and vector characteristics of enzyme activity), while pH, EC, and SIC had no correlation with these indices and metrics. These results indicated that mixing feldspathic sandstone and sand is highly susceptible to changes in soil microbial activity, and the soil N limitation decreased while P became more limited. In summary, our research showed that adding feldspathic sandstone into sand can significantly improve soil quality and provide a theoretical basis for the development of desertified land resources.

Variability in soil enzyme activity may have important implications for the knowledge of underground ecosystem functions driven by soil extracellular enzymes. To illustrate the temporal variation in soil enzyme activity after afforestation, we collected soil samples during different vegetative growth periods in three Caragana korshinskii Kom. stands of different ages (20, 30, and 40 years) and in a slope cropland in the Loess Plateau. These samples were used to analyze the catalase, sucrase, urease and alkaline phosphatase activities, the soil water content and the available soil nutrients (i.e., dissolved organic carbon, dissolved organic nitrogen, and available phosphorus). The results illustrated that the soil enzyme activities significantly increased following afforestation and varied with temporal variation. Overall, soil enzyme activities were higher in June and August, particularly, and both alkaline phosphatase and sucrase were more sensitive to temporal variation than the other two enzymes. In addition, redundancy analysis showed that soil enzyme activities were greatly correlated with soil nutrients, especially for dissolved organic carbon and dissolved organic nitrogen. Therefore, the results highlighted the importance of soil enzyme activities to soil nutrients under temporal variation following afforestation in the Loess Plateau, which may have practical significance for forest managers’ fertilization management of plantation in different seasons and different stand ages.

In the Loess Hilly Region of China, the widespread conversion of cropland to forestland and grassland has resulted in great increased in organic carbon (C), nitrogen (N) and phosphorus (P) stocks in the shallow soil layers. However, knowledge regarding changes in C, N, and P in deep soil is still limited. To elucidate the responses of deep soil C, N, and P stocks and stoichiometry in response to changes in land use, the soil from a 0-200 cm soil profile was collected from the following three typical land use patterns in the heartland of the region: forestland, grassland, and cropland. Compared with cropland, forestland and grassland had improved soil organic carbon (SOC) and total nitrogen (TN) contents and stocks at most soil depths but decreased total phosphorus (TP) contents and stocks. At soil depths of 0-200 cm in the forestland and grassland, the cumulative SOC stocks were improved by 34.97% and 7.61%, respectively, and the TN stocks were improved by 54.54% and 12.47%, respectively. The forestland had higher SOC, TN and TP contents and stocks compared to the grassland in almost all soil layers. The soil depths of 100-200 cm contained the highest percentages of SOC, TN and TP stocks (47.80%-49.93%, 46.08%-50.05% and 49.09%-52.98%, respectively). Additionally, the forestland and grassland showed enhanced soil C:P, N:P and C:N:P ratios, and the forestland had higher C:P, N:P and C:N:P ratios compared to the grassland. Furthermore, the SOC and TN stocks had significant impacts on the soil C:N, C:P and N:P ratios. It was concluded that afforestation was the best choice for soil nutrient restoration of degraded land, and deep soil provided an extremely important resource for evaluating soil C, N and P pools and cycling.

Artificial vegetation restoration can induce variations in accumulation and distribution of soil carbon (C), nitrogen (N) and phosphorus (P). However, little is known about variations in soil C, N and P nutrient fraction stratification following artificial vegetation in Loess Plateau China. Based on the hypothesis that re-vegetated can improve soil quality and stratification ratios (SR) can be used as an indicator to evaluate soil quality. This study measured contents and storages of soil organic carbon (SOC), total nitrogen (TN), total phosphorus (TP) and their SRs in topsoil (0-20 cm) and subsoil (20-60 cm) in three 30-year re-vegetated lands that had been converted from arable land (Robinia pseudoacacia L., Caragana Korshinskii Kom. and abandoned cropland with low interferences and few management measures) and one slope cropland (SC) as a control for three soil profiles(0-20 cm, 20-40 cm and 40-60 cm) from June 2009 to June 2013. The results showed that the contents and storages of SOC, TN and TP in re-vegetated land were significantly higher than those in the SC in both topsoil and subsoil. The storages of SOC, TN and TP in the topsoil (0-20 cm) of the re-vegetated lands increased by 16.2%-26.4%, 12.7%-28.4% and 16.5%-20.9%, respectively, and increased by smaller but significant amounts in subsoil from 2009 to 2013. The SRs for SOC, TN and TP in the re-vegetated lands were mostly >2 (either for 0-20:20-40 cm or 0-20:40-60 cm) and greater than that in the SC. The SRs showed an increasing trend with increasing restoration age. The results also showed that the land use type and soil depth were the most influential factors for the SRs and storages, and the SRs of SOC and TN had significantly positive correlations with their storages. The SRs were concluded to be a good indicator for evaluating the soil quality, which can be significantly enhanced through vegetation restoration. Moreover, vegetation restoration can significantly enhance SOC, TN and TP accumulation in both topsoil and subsoil.

Conversion of slope cropland to perennial vegetation has a significant impact on soil organic carbon (SOC) stock in A horizon. However, the impact on SOC and its fraction stratification is still poorly understood in deep soil in Loess Hilly Region (LHR) of China. Samples were collected from three typical conversion lands, Robinia psendoacacia (RP), Caragana Korshinskii Kom (CK), and abandoned land (AB), which have been converted from slope croplands (SC) for 30 years in LHR. Contents of SOC, total nitrogen (TN), particulate organic carbon (POC), and labile organic carbon (LOC), and their stratification ratios (SR) and carbon management indexes (CMI) were determined on soil profiles from 0 to 200 cm. Results showed that the SOC, TN, POC and LOC stocks of RP were significantly higher than that of SC in soil layers of 0-10, 10-40, 40-100 and 100-200 cm (P2.0 in most cases of RP, CK and AB. Moreover, CMI values of RP, CK, and AB increased by 11.61-61.53% in soil layer of 100-200 cm compared with SC. Significant positive correlations between SOC stocks and CMI or SR values of both surface soil and deep soil layers indicated that they were suitable indicators for soil quality and carbon changes evaluation. The Grain-to-Green Program (GTGP) had strong influence on improving quantity and activity of SOC pool through all soil layers of converted lands, and deep soil organic carbon should be considered in C cycle induced by GTGP. It was concluded that converting slope croplands to RP forestlands was the most efficient way for sequestering C in LHR soils.