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Chordopoxvirinae is a diverse subfamily of viruses V_/within Poxviridae. These geographically widespread viruses infect birds, reptiles, and mammals, and many are zoonotic (1). The increasing use of molecular methods has [...]

Once encompassing as many as 9 species of pocket gophers spread across most of the Mexican Altiplano, the genus Pappogeomys is now restricted to a single species, P. bulleri, occupying the mountains, tablelands, and coastal plains near the western end of the Trans-Mexican Volcanic Belt in west-central Mexico. Herein, we review the taxonomic history of Pappogeomys and examine relationships among populations of P. bulleri from throughout the geographic range of the species based on analyses of nonpreferentially stained karyotypes and mitochondrial and nuclear sequence data. Results of these analyses are concordant and reveal 3 major clades of P. bulleri that are separated by major physiographic features of the region, including the Sierra Madre del Sur and drainages of the Rio Grande de Santiago, Rio Ameca, Rio Ayuquila, and Rio Armeria. We reduce the number of subspecies of P. bulleri from 9 to 5 valid forms and provide a revised synonymy of the species. Key words: chromosomes, mitochondrial DNA, nuclear DNA, Pappogeomys, pocket gophers, systematics

The New World rodent family Heteromyidae shows a marvelous array of ecomorphological types, from bipedal, arid-adapted forms to scansorial, tropical-adapted forms. Although recent studies have resolved most of the phylogenetic relationships among heteromyids at the shallower taxonomic levels, fundamental questions at the deeper taxonomic levels remain unresolved. This study relies on DNA sequence information from 3 relatively slowly evolving mitochondrial genes, cytochrome c oxidase subunit I, 12S, and 16S, to examine basal patterns of phylogenesis in the Heteromyidae. Because slowly evolving mitochondrial genes evolve and coalesce more rapidly than most nuclear genes, they may be superior to nuclear genes for resolving short, basal branches. Our molecular data (2,381 base pairs for the 3-gene data set) affirm the monophyly of the family and resolve the major basal clades in the family. Alternative phylogenetic hypotheses of subfamilial relationships are examined statistically and the Perognathinae and Heteromyinae are found to represent sister clades relative to the Dipodomyinae. The 3 traditional subfamilial groupings are supported; the controversial placement of Microdipodops as a sister clade to Dipodomys in the Dipodomyinae is affirmed, Perognathus and Chaetodipus are distinct sister clades within the Perognathinae, and species of Liomys and Heteromys form the resolved clade Heteromyinae. However, Liomys is found to be paraphyletic relative to Heteromys and, given that this finding corroborates earlier studies, we present a formal taxonomy of Heteromys wherein we place Liomys in synonymy. Semiparametric and parametric methods are used to estimate divergence times from our molecular data and a chronogram of the Heteromyidae, calibrated by the oldest known fossils of Dipodomys and Perognathus, is presented. Our time estimates reveal subfamilial differentiation in the early Miocene (22.3-21.8 million years ago) and pose testable times of divergence for the basal heteromyid nodes. With the basal heteromyid clades resolved and cladogenic events positioned in a time framework, we review the major geological and paleoecological events of the Oligocene and Miocene associated with the early historical biogeography of the family. Key words: Chaetodipus, Dipodomys, Heteromyidae, Heteromys, historical biogeography, Liomys, Microdipodops, mitochondrial DNA, Perognathus, phylogenetics

A study of chromosomal variation in the Mexican pocket gopher Cratogeomys merriami revealed differences in diploid number that correspond to 3 major genetic and morphological clades within the species. Each of these 3 clades is diagnosable based on multiple characters, including chromosomal diploid number, quantitative and qualitative morphological characters, and mitochondrial DNA. Accordingly, we restrict the name C. merriami (Thomas) to include only pocket gophers of this genus from the states of Mexico, Mexico D.F., northern Morelos, and west-central Puebla. We resurrect the species name C. fulvescens Merriam to represent members of this genus from southern Tlaxcala, east-central Puebla, and parts of west-central Veracruz. Finally, we resurrect the species name C. perotensis Merriam to represent members of this genus from southern Hidalgo, northern Tlaxcala, north-central Puebla, and parts of west-central Veracruz. Based on the observation that differences in diploid number usually signal reproductive isolation between populations of pocket gophers, we hypothesize that C. merriami, C. fulvescens, and C. perotensis are reproductively incompatible. We provide synonymies and descriptions for these 3 species, along with a key to the C. castanops species group to which these species belong. Key words: chromosomes, Cratogeomys, mitochondrial DNA, morphology, nuclear DNA, pocket gophers, systematics

The genus Cratogeomys, particularly members of the Cratogeomys gymnurus species group, account for much of the high species diversity of pocket gophers in the Trans-Mexican Volcanic Belt. Recent molecular studies of this species group have shown strong discordance between genetically defined clades and current species taxonomy. Accordingly, we investigated relationships among the 5 species in the C. gymnurus species group using mitochondrial and nuclear DNA, chromosomes, and morphological characters. Although quantitative morphometrics provided little discrimination among species or clades within this group, the molecular data sets were consistent in identifying 5 allopatric clades, none of which corresponded to any of the 5 currently recognized species. Four of these 5 genetically defined clades lack clear diagnosability, and so are grouped into the single polytypic species, C. fumosus. The fifth clade is diagnosable based on multiple characters, including nuclear genotype, chromosomal diploid number, parasite fauna, and qualitative morphological characters. Accordingly, we resurrect Merriam's (1895) species planiceps to represent members of this clade, which occurs in the Volcan de Toluca and Valle de Bravo regions of central Mexico. Based on the observation that differences in diploid number usually signal reproductive isolation between populations of pocket gophers, we hypothesize that C. fumosus and C. planiceps are reproductively incompatible. We provide synonymies and descriptions for these 2 species, along with a key to this species group, which is now called the C. fumosus species group. Key words: chromosomes, Cratogeomys, mitochondrial DNA, morphology, nuclear DNA, pocket gophers, systematics

Pappogeomys alcorni is a peripherally isolated species that currently is designated as a rare species in Mexico. There are only 4 known museum specimens, all collected between the years 1950 and 1966, and recent attempts have failed to locate individuals in the wild. Although only 1 new specimen (skin only) has been collected since the original systematic work on P. alcorni, new analytical methods permit reexamination of existing specimens. DNA was isolated from a 48-year-old museum skin to investigate the phylogenetic relationship of this rare taxon to other species of Pappogeomys and Cratogeomys. Phylogenetic analysis based on 424 base pairs of the mitochondrial cytochrome-b gene and morphometric analysis of 101 individuals of Pappogeomys indicate that P. alcorni is a geographically disjunct subspecies of P. buUeri rather than a monotypic species. Key words: ancient DNA, morphometrics, mtDNA, Pappogeomvs, pocket gopher