1. X-ray crystal structure of the light-independent protochlorophyllide reductase
- Author
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Muraki, Norifumi, Nomata, Jiro, Ebata, Kozue, Mizoguchi, Tadashi, Shiba, Tomoo, Tamiaki, Hitoshi, Kurisu, Genji, and Fujita, Yuichi
- Subjects
Gene mutations -- Research ,Crystals -- Structure ,Photosynthesis -- Research ,Proteins -- Research -- Genetic aspects ,Chlorophyll -- Research ,Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
Photosynthetic organisms adopt two different strategies for the reduction of the C17 = C18 double bond of protochlorophyllide (Pchlide) to form chlorophyllide a, the direct precursor of chlorophyll a (refs 1-4). The first involves the activity of the light-dependent Pchlide oxidoreductase (5-9), and the second involves the light-independent (dark-operative) Pchlide oxidoreductase (10) (DPOR). DPOR is a nitrogenase-like enzyme consisting of two components, L-protein (a BchL dimer) and NB-protein (a BchN-BchB heterotetramer), which are structurally related to nitrogenase Fe protein and MoFe protein, respectively (10,11). Here we report the crystal structure of the NB-protein of DPOR from Rhodobacter capsulatus at a resolution of 2.3 Å. As expected, the overall structure is similar to that of nitrogenase MoFe protein: each catalytic BchN-BchB unit contains one Pchlide and one iron-sulphur cluster (NB-cluster) coordinated uniquely by one aspartate and three cysteines. Unique aspartate ligation is not necessarily needed for the cluster assembly but is essential for the catalytic activity. Specific Pchlide-binding accompanies the partial unwinding of an α-helix that belongs to the next catalytic BchN-BchB unit. We propose a unique trans-specific reduction mechanism in which the distorted C17-propionate of Pchlide and an aspartate from BchB serve as proton donors for C18 and C17 of Pchlide, respectively. Intriguingly, the spatial arrangement of the NB-cluster and Pchlide is almost identical to that of the P-cluster and FeMo-cofactor in nitrogenase MoFe-protein, illustrating that a common architecture exists to reduce chemically stable multibonds of porphyrin and dinitrogen., Chlorophylls are tetrapyrrole pigments essential for photosynthesis. An asymmetric conjugated double-bond system of chlorophyll a, crucial for efficient light absorption, is formed in the penultimate step of the biosynthetic pathway [...]
- Published
- 2010
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