1. From proteome to candidate vaccines: target discovery and molecular dynamics-guided multi-epitope vaccine engineering against kissing bug.
- Author
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Albaqami FF, Altharawi A, Althurwi HN, and Alharthy KM
- Subjects
- Humans, Animals, Immunodominant Epitopes immunology, Proteomics methods, Antigens, Protozoan immunology, Antigens, Protozoan chemistry, Antibodies, Protozoan immunology, Protozoan Proteins immunology, Protozoan Proteins chemistry, Vaccine Development, Epitopes, T-Lymphocyte immunology, Epitopes, T-Lymphocyte chemistry, Trypanosoma cruzi immunology, Molecular Dynamics Simulation, Chagas Disease immunology, Chagas Disease prevention & control, Proteome immunology, Toll-Like Receptor 4 immunology, Toll-Like Receptor 4 metabolism, Toll-Like Receptor 4 chemistry, Protozoan Vaccines immunology, Molecular Docking Simulation
- Abstract
Introduction: Trypanosoma cruzi is a protozoan parasite that causes the tropical ailment known as Chagas disease, which has its origins in South America. Globally, it has a major impact on health and is transported by insect vector that serves as a parasite. Given the scarcity of vaccines and the limited treatment choices, we conducted a comprehensive investigation of core proteomics to explore a potential reverse vaccine candidate with high antigenicity., Methods: To identify the immunodominant epitopes, T. cruzi core proteomics was initially explored. Consequently, the vaccine sequence was engineered to possess characteristics of non-allergenicity, antigenicity, immunogenicity, and enhanced solubility. After modeling the tertiary structure of the human TLR4 receptor, the binding affinities were assessed employing molecular docking and molecular dynamics simulations (MDS)., Results: Docking of the final vaccine design with TLR4 receptors revealed substantial hydrogen bond interactions. A server-based methodology for immunological simulation was developed to forecast the effectiveness against antibodies (IgM + IgG) and interferons (IFN-g). The MDS analysis revealed notable levels of structural compactness and binding stability with average RMSD of 5.03 Aring;, beta-factor 1.09e+5 Å, Rg is 44.7 Aring; and RMSF of 49.50 Aring;. This is followed by binding free energies calculation. The system stability was compromised by the complexes, as evidenced by their corresponding Gibbs free energies of -54.6 kcal/mol., Discussion: Subtractive proteomics approach was applied to determine the antigenic regions of the T cruzi. Our study utilized computational techniques to identify B- and T-cell epitopes in the T. cruzi core proteome. In current study the developed vaccine candidate exhibits immunodominant features. Our findings suggest that formulating a vaccine targeting the causative agent of Chagas disease should be the initial step in its development., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Albaqami, Altharawi, Althurwi and Alharthy.)
- Published
- 2024
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