29 results on '"Chow BL"'
Search Results
2. Serum anion gap revisited: a verified reference interval for contemporary use.
- Author
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Chionh CY, Poh CB, Roy DM, Koduri S, Chow BL, Tan PT, Tin AS, Kam JW, Lau CS, Hoo SP, Phua SK, and Aw TC
- Subjects
- Adult, Electrolytes, Humans, Reference Values, Serum Albumin analysis, Acid-Base Equilibrium, Acidosis
- Abstract
Background: The anion gap (AG) is often used to evaluate acid-base disorders. The reference interval for normal AG is used to differentiate between raised (gap) or normal AG (non-gap) acidosis. Historically accepted AG values may not be valid with the evolution of modern analytical techniques and the reference interval requires revalidation., Aims: To determine the reference interval for AG based on current laboratory techniques., Methods: During a health-screening exercise, 284 participants with no major illnesses volunteered surplus blood for analysis. The samples were tested in an internationally accredited clinical laboratory. AG was calculated by [Na
+ ] - [Cl- ] - [HCO3 - ] and AGK by [Na+ ] + [K+ ] - [Cl- ] - [HCO3 - ]. The reference interval was determined at 2.5th-97.5th percentiles. Analysis was further undertaken for a subcohort of 156 individuals with no suboptimal health indicators., Results: Median age was 35 years, body mass index 23.4 kg/m2 and the glomerular filtration rate was 106 mL/min/1.73 m2 . Median AG was 13 mmol/L and the reference interval for normal AG is 10-18 mmol/L with a 99% level of confidence. Statistically significant differences in AG were detected for sex, race, obesity and serum albumin, but the difference was 1 mmol/L between subgroups. The reference interval was the same for the sub-cohort of 156 individuals. Median AGK was 17.7 mmol/L and reference interval was 14.6-22.5 mmol/L., Conclusions: The AG reference interval of 10-18 mmol/L is valid for laboratories with similar reference intervals for electrolytes. Lower values expected with current laboratory techniques were not observed. The median AG of 13 mmol/L may be used to differentiate gap acidosis, non-gap acidosis or mixed acid-base disorders., (© 2021 Royal Australasian College of Physicians.)- Published
- 2022
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3. Weight-Based Assessment of Fluid Overload in Patients with Acute Kidney Injury.
- Author
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Chow BL, Poh CB, and Chionh CY
- Subjects
- Acute Kidney Injury therapy, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Pilot Projects, Prognosis, Prospective Studies, Renal Dialysis, Water-Electrolyte Imbalance, Acute Kidney Injury pathology, Body Weight, Fluid Therapy adverse effects
- Abstract
Introduction: Acute kidney injury (AKI) with fluid overload is associated with poor outcomes. While percentage fluid overload (PFO) using intake/output charts (PFOi/o) has been validated as a marker of overload, accurate PFOi/o measurements may not be possible in a general ward. We propose an alternative weight-based PFO calculation: PFOw = [(maximum weight - baseline weight) ÷ baseline weight] × 100%., Methods: This is a prospective, observational pilot study on general ward inpatients with AKI who were referred for nephrology consult. PFOw was compared with PFOi/o, and both were evaluated for associations with dialysis requirement, AKI stage 2 or 3, and 90-day mortality., Results: Fifty-eight patients with a median age of 67.5 years (interquartile range 18.0) were recruited. Of which, 33 (56.9%) were males and 41 (70.7%) had preexisting CKD 3 or higher. We found no correlation between PFOi/o and PFOw (R2 = 0.015, p = 0.531). A higher PFOw was observed in AKI stage 2 or 3 (p = 0.005) and in patients requiring dialysis (p = 0.001). On multivariate analysis, each percentage increase in PFOw was associated with increased odds of AKI stage 2 or 3 (odds ratio 1.37 [95% CI 1.05-1.78], p = 0.020) and dialysis need (odds ratio 1.69 [95% CI 1.20-2.39], p = 0.003). Twenty-nine patients had complete quantitative data to calculate PFOi/o. Multivariate analysis of these 29 patients showed that PFOw correlated with AKI stage 2 or 3 and dialysis requirement, while PFOi/o had no correlation with these events. The area under the curve receiver operating characteristics of PFOw was 0.706 for AKI stage 2 or 3 and 0.819 for AKI requiring dialysis. The optimal PFOw cutoff was determined at ≥1%. Three deaths occurred within 90 days, and all had PFOw ≥ 1%, although the log-rank test did not achieve statistical significance (p = 0.050)., Conclusion: The proposed PFOw is a potential prognostic indicator for general ward patients with AKI. PFOw ≥ 1% is associated with poor renal outcomes., (© 2020 S. Karger AG, Basel.)
- Published
- 2020
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4. Postcolonoscopy splenic rupture: the under-reporting of an unpropitious phenomena?
- Author
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Chow BL and Zia K
- Subjects
- Aged, Humans, Incidence, Male, Wounds and Injuries diagnosis, Colonoscopy adverse effects, Spleen injuries, Wounds and Injuries epidemiology, Wounds and Injuries etiology
- Abstract
Splenic rupture secondary to colonoscopy is a rare but potentially fatal complication. Given the disparity between the small number of case reports with the incidence reported by some investigators, we contend that the former is not representative of the true extent of this sequela. We present a case report of postcolonoscopy splenic rupture, where the patient had a bizarre initial presentation of chest pain and collapse; and only developed haemodynamic instability and abdominal pain on day 2 postprocedure. Diagnosis was made with a CT scan, and resolution of symptoms was achieved with a splenectomy., Competing Interests: Competing interests: None declared., (© BMJ Publishing Group Limited 2019. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2019
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5. The curious case of biliary emesis and bowel obstruction from Bouveret syndrome.
- Author
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Chow BL, Zia K, Scott S, and Pathmarajah M
- Subjects
- Aged, Biliary Fistula complications, Duodenal Obstruction diagnostic imaging, Duodenum diagnostic imaging, Endoscopy, Digestive System methods, Gallstones complications, Gallstones surgery, Gastric Outlet Obstruction surgery, Humans, Laparotomy methods, Male, Stomach pathology, Syndrome, Treatment Outcome, Biliary Tract pathology, Duodenal Obstruction etiology, Gastric Outlet Obstruction etiology, Stomach surgery, Vomiting etiology
- Abstract
Bouveret syndrome is a rare complication of biliary lithiasis. This sequela is caused by the passage of the gallstone via a bilioenteric fistula, resulting in an impacted gallstone in the duodenum or stomach. The common presentation of non-specific symptoms contributes to the diagnostic uncertainty and delay, which is strongly associated with adverse outcomes. We report an uncomplicated stone extraction via open gastrotomy in an elderly man afflicted with bowel obstruction and biliary vomit secondary to Bouveret syndrome., Competing Interests: Competing interests: None declared., (© BMJ Publishing Group Limited 2019. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2019
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6. Toxicological findings in fatal motor vehicle collisions in ontario, Canada: a one-year study.
- Author
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Woodall KL, Chow BL, Lauwers A, and Cass D
- Abstract
Drug-impaired driving is a complex area of forensic toxicology due in part to limited data concerning the type of drugs involved and the concentrations detected. This study analyzed toxicological findings in drivers from fatal motor vehicle collisions (FMVCs) in Ontario, Canada, over a one-year period using a standardized protocol. Of the 229 cases included in the study, 56% were positive for alcohol and/or drugs. After alcohol, cannabis was the most frequently encountered substance (27%), followed by benzodiazepines (17%) and antidepressants (17%). There were differences in drugs detected by age but no marked difference in drugs detected between single and multiple FMVC's. Not all drugs detected were considered impairing either due to drug type, concentration or case history. The findings indicate the importance of comprehensive drug testing in FMVCs and highlight the need to consider a variety of factors, in addition to drug type and concentration, when assessing the role of drugs in driving impairment., (© 2015 American Academy of Forensic Sciences.)
- Published
- 2015
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7. Evaluation of automated repetitive-sequence-based PCR (DiversiLab) compared to PCR ribotyping for rapid molecular typing of community- and nosocomial-acquired Clostridium difficile.
- Author
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Church DL, Chow BL, Lloyd T, and Gregson DB
- Subjects
- Automation methods, Bacterial Typing Techniques economics, Cluster Analysis, Genotype, Humans, Polymerase Chain Reaction economics, Quebec, Repetitive Sequences, Nucleic Acid genetics, Reproducibility of Results, Bacterial Typing Techniques methods, Clostridioides difficile classification, Clostridioides difficile genetics, Clostridium Infections microbiology, Community-Acquired Infections microbiology, Cross Infection microbiology, Polymerase Chain Reaction methods
- Abstract
Automated repetitive PCR (rep-PCR; DiversiLab) was compared to PCR ribotyping of the 16S-23S RNA intergenic spacer of Clostridium difficile (CD) as the "gold standard" method for CD typing. PCR products were separated on DiversiLab LabChips (bioMérieux, St. Laurent, Quebec, Canada) utilizing a 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA) operating the DiversiLab v1.4 assay. Bioanalyzer data were exported to a secure DiversiLab website and analyzed with DiversiLab v3.4 software. Replicability of each method was verified by confirming that the 5 CD reference strains (RS) formed distinct clusters (CD4, CD6, VL0047, VL0013 [ribotype 027], VL0018 [ribotype 001]) by both typing methods. Ninety randomly selected clinical isolates (CS) were analyzed by both methods: 49 from community-acquired and 41 from hospital-acquired cases. A similarity index (SI) of ≥90% was used to define clusters when comparing the known RS cluster to the PCR ribotyping and rep-PCR patterns of CS. Fourteen different PCR-ribotype clusters were identified, but most CS formed 4 major clusters (i.e., CD4 [15/90; 17%], CD6 [17%], 027 [12%], and 001 [9%]). A total of 7 rep-PCR types were identified, but most CS formed 2 major rep-PCR clusters (i.e., CD4 [29/90; 32%] and CD6 [23%]); several PCR ribotypes occurred within a single rep-PCR cluster. Rep-PCR did not distinguish 027 or 001 isolates; i) 027 RS strain did not cluster, ii) eleven 027 CS strains clustered as CD4, iii) no 027 CS strains clustered with the 027 RS, and iv) only 2 001 CS clustered with the RS. Agreement between the PCR-ribotype and rep-PCR clusters only occurred for 35/90 (39%) of the CS using a rep-PCR SI of ≥90%. Rep-PCR time to results was similar, but the annual costs of routinely using this method are 32% higher than PCR ribotyping. Routine use of rep-PCR for CD typing is limited by its lack of definitive separation of the hypertoxigenic 027 or 001 outbreak CD strains., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
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8. Comparison of automated repetitive-sequence-based polymerase chain reaction and spa typing versus pulsed-field gel electrophoresis for molecular typing of methicillin-resistant Staphylococcus aureus.
- Author
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Church DL, Chow BL, Lloyd T, and Gregson DB
- Subjects
- Cluster Analysis, Electrophoresis, Gel, Pulsed-Field economics, Genotype, Humans, Molecular Epidemiology economics, Molecular Epidemiology methods, Molecular Typing economics, Polymerase Chain Reaction economics, Repetitive Sequences, Nucleic Acid, Staphylococcal Infections epidemiology, Staphylococcal Infections microbiology, Time Factors, Electrophoresis, Gel, Pulsed-Field methods, Methicillin-Resistant Staphylococcus aureus classification, Methicillin-Resistant Staphylococcus aureus genetics, Molecular Typing methods, Polymerase Chain Reaction methods
- Abstract
Automated repetitive polymerase chain reaction (PCR) (DiversiLab, bioMérieux, St. Laurent, Quebec, Canada) and single locus sequence typing of the Staphylococcus protein A (spa) gene with spa-type assignment by StaphType RIDOM software were compared to pulsed-field gel electrophoresis (PFGE) as the "gold standard" method for methicillin-resistant Staphylococcus aureus (MRSA) typing. Fifty-four MRSA isolates were typed by all methods: 10 of known PFGE CMRSA type and 44 clinical isolates. Correct assignment of CMRSA type or cluster occurred for 47 of 54 (87%) of the isolates when using a rep-PCR similarity index (SI) of ≥95%. Rep-PCR gave 7 discordant results [CMRSA1 (3), CMRSA2 (1), CMRSA4 (1), and CMRSA10 (2)], and some CMRSA clusters were not distinguished (CMRSA10/5/9, CMRSA 7/8, and CMRSA3/6). Several spa types occurred within a single PFGE or repetitive PCR types among the 19 different spa types found. spa type t037 was shared by CMRSA3 and CMRSA6 strains, and CMRSA9 and most CMRSA10 strains shared spa type t008. Time to results for PFGE, repetitive PCR, and spa typing was 3-4 days, 24 h, and 48 h, respectively. The annual costs of using spa or repetitive PCR were 2.4× and 1.9× higher, respectively, than PFGE but routine use of spa typing would lower annual labor costs by 0.10 full-time equivalents compared to PFGE. Repetitive PCR is a good method for rapid outbreak screening, but MRSA isolates that share the same repetitive PCR or PFGE patterns can be distinguished by spa typing., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
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9. Metallo-beta-lactamase-producing Pseudomonas aeruginosa isolated from a large tertiary centre in Kenya.
- Author
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Pitout JD, Revathi G, Chow BL, Kabera B, Kariuki S, Nordmann P, and Poirel L
- Subjects
- Anti-Bacterial Agents pharmacology, Carbapenems pharmacology, Electrophoresis, Gel, Pulsed-Field, Humans, Integrons genetics, Kenya epidemiology, Microbial Sensitivity Tests, Polymerase Chain Reaction, Pseudomonas Infections microbiology, Pseudomonas aeruginosa enzymology, Pseudomonas aeruginosa genetics, Sequence Analysis, DNA, beta-Lactam Resistance genetics, beta-Lactamases genetics, Hospitals, University, Pseudomonas Infections epidemiology, Pseudomonas aeruginosa drug effects, Pseudomonas aeruginosa isolation & purification, beta-Lactamases biosynthesis
- Abstract
This study was designed to characterize the beta-lactamase content of carbapenem-resistant Pseudomonas aeruginosa isolates recovered during 2006 and 2007 in a large tertiary-care centre in Nairobi, Kenya. Molecular characterization was done using PCR and sequencing, and typing was performed using pulsed-field gel electrophoresis (PFGE). In total, 416 P. aeruginosa isolates were obtained during that period, of which 57 (13.7%) were resistant to carbapenems. All carbapenem-resistant isolates tested positive for metallo-beta-lactamase (MBL) production. All MBL isolates produced VIM-2 with two types of integron structures. PFGE identified three clonally related groups of VIM-2-producing P. aeruginosa, including a pan-resistant clone that was responsible for nosocomial outbreaks during 2006 and 2007 in the intensive-care unit. These findings suggest that continuous molecular surveillance needs to be performed to monitor the spread within the hospital of this pan-resistant strain. This study is the first report of VIM-2-producing P. aeruginosa from the African continent.
- Published
- 2008
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10. Molecular epidemiology of CTX-M-producing Escherichia coli in the Calgary Health Region: emergence of CTX-M-15-producing isolates.
- Author
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Pitout JD, Church DL, Gregson DB, Chow BL, McCracken M, Mulvey MR, and Laupland KB
- Subjects
- Canada epidemiology, Escherichia coli drug effects, Escherichia coli isolation & purification, Escherichia coli Infections microbiology, Humans, Microbial Sensitivity Tests, beta-Lactamases biosynthesis, Escherichia coli enzymology, Escherichia coli Infections epidemiology, Molecular Epidemiology, beta-Lactam Resistance genetics, beta-Lactamases genetics
- Abstract
A study was designed to describe the molecular epidemiology of CTX-M-producing Escherichia coli over a 6-year period (2000 to 2005) in a large well-defined Canadian region with a centralized laboratory system. Molecular characterization was done by isoelectric focusing, PCR, and automated sequencing, while genetic relatedness was determined by pulsed-field gel electrophoresis with XbaI. Of the 552 viable extended-spectrum beta-lactamase-producing E. coli isolates isolated, 354 (64%) were positive for blaCTX-M genes associated with ISEcp1; 211 produced CTX-M-14, 128 produced CTX-M-15, 5 produced CTX-M-2, 4 produced CTX-M-3, 4 produced CTX-M-24, and 2 produced CTX-M-27. CTX-M-positive isolates were significantly more resistant to the fluoroquinolones than CTX-M-negative isolates, while CTX-M-15 producers were more likely to be resistant to gentamicin and tobramycin. There was a predominance of CTX-M-14 during the first 4 years of the study period, with community outbreaks associated with cluster 14A during 2000, 2001, and 2003. A substantial increase in CTX-M-15 producers occurred during the last 18 months and was due to clusters 15A and 15AR (where AR indicates related to A) in the hospital and nursing home sectors. Our results demonstrate that the persistence and dissemination of CTX-M genes among E. coli populations in larger geographic health care regions is dynamic, with the continuous emergence of clonally related CTX-M-15. This study illustrates the importance of molecular surveillance in tracking CTX-M-producing E. coli strains in the community and investigating their influx into hospitals.
- Published
- 2007
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11. Molecular epidemiology of metallo-beta-lactamase-producing Pseudomonas aeruginosa in the Calgary Health Region: emergence of VIM-2-producing isolates.
- Author
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Pitout JD, Chow BL, Gregson DB, Laupland KB, Elsayed S, and Church DL
- Subjects
- Alberta epidemiology, Anti-Bacterial Agents pharmacology, Carbapenems pharmacology, Electrophoresis, Gel, Pulsed-Field, Humans, Microbial Sensitivity Tests, Polymerase Chain Reaction methods, Pseudomonas Infections microbiology, Pseudomonas aeruginosa drug effects, Pseudomonas aeruginosa enzymology, Pseudomonas aeruginosa isolation & purification, beta-Lactamases genetics, Molecular Epidemiology, Pseudomonas Infections epidemiology, Pseudomonas aeruginosa genetics, beta-Lactam Resistance, beta-Lactamases biosynthesis
- Abstract
A study was designed to describe the molecular epidemiology of carbapenem-resistant (CR) Pseudomonas aeruginosa in a large well-defined geographical region with a centralized laboratory system serving one pediatric and three large adult hospitals (acute care centers I, II, and III). Molecular characterization was done using PCR with sequencing of the integron-associated gene cassettes. Pulsed-field gel electrophoresis (PFGE) using a modified combined Stenotrophomas maltophilia and Streptococcus pneumoniae protocol with SpeI was performed on CR P. aeruginosa strains isolated in the Calgary Health Region during 2002-2006. The majority (96%) of metallo-beta-lactamase (MBL)-producing isolates produced VIM-2 with gene cassettes aacC1 and aacA4, while 4% produced IMP-7 with gene cassettes aacC4 and aacC1. Eighty-six percent of VIM-2 producers belonged to a cluster (MBLV) that was responsible for nosocomial outbreaks during 2003 (intensive care unit) and 2004 (bone marrow transplant unit) at acute care center I. Environmental isolates from these units also belonged to MBLV. The majority of strains from cluster MBLVR (related to MBLV) were present in acute care center III. Isolates producing IMP-7 belonged to a different cluster (MBLI) and were related to strains described during the 1990 s. PFGE of the MBL-negative CR strains showed that 37% belonged to a closely related cluster, NMBL, whose members were predominantly isolated from acute care center II. Our findings suggest that CR and dissemination of MBL clusters among P. aeruginosa populations in large geographic healthcare regions are dynamic processes that require continuous molecular surveillance.
- Published
- 2007
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12. New quadriplex PCR assay for detection of methicillin and mupirocin resistance and simultaneous discrimination of Staphylococcus aureus from coagulase-negative staphylococci.
- Author
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Zhang K, Sparling J, Chow BL, Elsayed S, Hussain Z, Church DL, Gregson DB, Louie T, and Conly JM
- Subjects
- Anti-Bacterial Agents pharmacology, Bacterial Proteins genetics, DNA Primers, DNA, Bacterial analysis, Humans, Methicillin pharmacology, Methicillin Resistance, Microbial Sensitivity Tests, Mupirocin pharmacology, RNA, Ribosomal, 16S genetics, Reproducibility of Results, Sensitivity and Specificity, Species Specificity, Staphylococcus drug effects, Staphylococcus enzymology, Staphylococcus genetics, Staphylococcus aureus drug effects, Staphylococcus aureus genetics, Coagulase metabolism, Drug Resistance, Bacterial genetics, Polymerase Chain Reaction methods, Staphylococcus classification, Staphylococcus aureus classification
- Abstract
Major challenges in diagnostic molecular microbiology are to develop a simple assay to distinguish Staphylococcus aureus from the less virulent but clinically important coagulase-negative staphylococci (CoNS) and to simultaneously determine their antibiotic resistance profiles. Multiplex PCR assays have been developed for the detection of methicillin- and mupirocin-resistant S. aureus and CoNS but not for the simultaneous discrimination of S. aureus from CoNS. We designed a new set of Staphylococcus genus-specific primers and developed a novel quadriplex PCR assay targeting the 16S rRNA (Staphylococcus genus specific), nuc (S. aureus species specific), mecA (a determinant of methicillin resistance), and mupA (a determinant of mupirocin resistance) genes to identify most staphylococci, to discriminate S. aureus from CoNS and other bacteria, and to simultaneously detect methicillin and mupirocin resistance. Validation of the assay with 96 ATCC control strains and 323 previously characterized clinical isolates, including methicillin- and mupirocin-sensitive and -resistant S. aureus and CoNS isolates and other bacteria, demonstrated 100% sensitivity, specificity, and accuracy. This assay represents a simple, rapid, accurate, and reliable approach for the detection of methicillin- and mupirocin-resistant staphylococci and offers the hope of preventing their widespread dissemination through early and reliable detection.
- Published
- 2004
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13. Involvement of two endonuclease III homologs in the base excision repair pathway for the processing of DNA alkylation damage in Saccharomyces cerevisiae.
- Author
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Hanna M, Chow BL, Morey NJ, Jinks-Robertson S, Doetsch PW, and Xiao W
- Subjects
- Antineoplastic Agents, Alkylating pharmacology, Apoptosis drug effects, Apurinic Acid metabolism, Cell Division drug effects, DNA Glycosylases genetics, DNA Glycosylases metabolism, DNA Repair Enzymes, DNA Replication drug effects, DNA, Fungal drug effects, DNA, Fungal genetics, DNA, Fungal metabolism, DNA-(Apurinic or Apyrimidinic Site) Lyase genetics, DNA-(Apurinic or Apyrimidinic Site) Lyase metabolism, Endodeoxyribonucleases genetics, Endodeoxyribonucleases metabolism, Escherichia coli enzymology, Gene Deletion, Methyl Methanesulfonate pharmacology, Mutation, N-Glycosyl Hydrolases deficiency, N-Glycosyl Hydrolases genetics, Polynucleotides metabolism, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Alkylation, DNA Damage, DNA Repair genetics, N-Glycosyl Hydrolases metabolism, N-Glycosyl Hydrolases physiology, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae Proteins metabolism
- Abstract
DNA base excision repair (BER) is initiated by DNA glycosylases that recognize and remove damaged bases. The phosphate backbone adjacent to the resulting apurinic/apyrimidinic (AP) site is then cleaved by an AP endonuclease or glycosylase-associated AP lyase to invoke subsequent BER steps. We have used a genetic approach in Saccharomyces cerevisiae to determine whether or not AP sites are blocks to DNA replication and the biological consequences if AP sites persist in the genome. We previously reported that yeast cells deficient in the two AP endonucleases (apn1 apn2 double mutant) are extremely sensitive to killing by a model DNA alkylating agent methyl methanesulfonate (MMS) and that this sensitivity can be reduced by deleting the MAG1 3-methyladenine DNA glycosylase gene. Here we report that in the absence of the AP endonucleases, deletion of two Escherichia coli endonuclease III homologs, NTG1 and NTG2, partially suppresses MMS-induced killing, which indicates that the AP lyase products are deleterious unless they are further processed by an AP endonuclease. The severe MMS sensitivity seen in AP endonuclease deficient strains can also be rescued by treatment of cells with the AP lyase inhibitor methoxyamine, which suggests that the product of AP lyase action on an AP site is indeed an extremely toxic lesion. In addition to the AP endonuclease interactions, deletion of NTG1 and NTG2 enhances the mag1 mutant sensitivity to MMS, whereas overexpression of MAG1 in either the ntg1 or ntg2 mutant severely affects cell growth. These results help to delineate alkylation base lesion flow within the BER pathway.
- Published
- 2004
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14. Development and validation of a molecular beacon probe-based real-time polymerase chain reaction assay for rapid detection of methicillin resistance in Staphylococcus aureus.
- Author
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Elsayed S, Chow BL, Hamilton NL, Gregson DB, Pitout JD, and Church DL
- Subjects
- Carrier Proteins genetics, Coagulase deficiency, Coagulase physiology, Endonucleases genetics, Enterobacteriaceae drug effects, Enterobacteriaceae enzymology, Enterobacteriaceae genetics, Enterococcus drug effects, Enterococcus enzymology, Enterococcus genetics, Fluorescent Dyes metabolism, Methicillin therapeutic use, Muramoylpentapeptide Carboxypeptidase genetics, Penicillin-Binding Proteins, Prospective Studies, Pseudomonas aeruginosa drug effects, Pseudomonas aeruginosa enzymology, Pseudomonas aeruginosa genetics, Reverse Transcriptase Polymerase Chain Reaction instrumentation, Sensitivity and Specificity, Staphylococcal Infections diagnosis, Staphylococcal Infections drug therapy, Staphylococcal Infections metabolism, Staphylococcus aureus drug effects, Staphylococcus aureus enzymology, Streptococcus drug effects, Streptococcus enzymology, Streptococcus genetics, Time Factors, Urban Health Services, Bacterial Proteins, Hexosyltransferases, Methicillin metabolism, Methicillin Resistance genetics, Micrococcal Nuclease, Molecular Probes genetics, Peptidyl Transferases, Reverse Transcriptase Polymerase Chain Reaction methods, Staphylococcus aureus genetics, Staphylococcus aureus isolation & purification
- Abstract
Context: A rapid, real-time, duplex, fluorescent molecular beacon probe-based polymerase chain reaction (PCR) assay was recently developed for the detection of methicillin-resistant Staphylococcus aureus., Objective: To describe the development and validation of this unique assay., Design: Prospective laboratory analysis., Setting: Urban health region/centralized diagnostic microbiology laboratory. BACTERIAL STRAINS: One hundred eighty-one previously characterized clinical and American Type Culture Collection isolates, including 50 strains each of methicillin-resistant and methicillin-sensitive S aureus, plus 50 strains of coagulase-negative staphylococci and 31 nonstaphylococcal isolates to ensure assay specificity., Intervention: Assays were performed on purified genomic DNA extracted from growing bacterial colonies. Two sets of oligonucleotide primers were used to specifically amplify the mecA and nuc genes, followed by detection of amplicons using fluorophore-labeled molecular beacon probes. Assays were performed on the Mx4000 Multiplex Quantitative PCR System (Stratagene Inc, La Jolla, Calif)., Main Outcome Measures: (1) Assay sensitivity and specificity, and (2) analytical sensitivity., Results: The assay demonstrated 100% sensitivity and 100% specificity, and accurately characterized isolates as methicillin-resistant S aureus, methicillin-sensitive S aureus, or methicillin-resistant coagulase-negative staphylococci, with test results available in 2.5 hours. The analytical sensitivity of the assay was determined to be between 6 and 60 genomic equivalents., Conclusions: This assay is rapid, accurate, easy to perform, and is compatible with other real-time PCR instruments, making it a suitable alternative to conventional PCR methodologies.
- Published
- 2003
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15. Application of SFHR to gene therapy of monogenic disorders.
- Author
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Goncz KK, Prokopishyn NL, Chow BL, Davis BR, and Gruenert DC
- Subjects
- Antigens, CD34, Cells, Cultured, Electroporation, Globins genetics, Hematopoietic Stem Cells, Humans, Lymphocytes immunology, Lymphocytes metabolism, Microinjections, Plasmids administration & dosage, Gene Targeting methods, Genetic Therapy methods, Sickle Cell Trait therapy
- Abstract
Gene therapy treatment of disease will be greatly facilitated by the identification of genetic mutations through the Human Genome Project. The specific treatment will ultimately depend on the type of mutation as different genetic lesions will require different gene therapies. For example, large rearrangements and translocations may call for complementation with vectors containing the cDNA for the wild-type (wt) gene. On the other hand, smaller lesions, such as the reversion, addition or deletion of only a few base pairs, on single genes, or monogenic disorders, lend themselves to gene targeting. The potential for one gene targeting technique, small fragment homologous replacement (SFHR) to the gene therapy treatment of sickle cell disease (SCD) is presented. Successful conversion of the wt-beta-globin locus to a SCD genotype of human lymphocytes (K562) and progenitor/stem hematopoietic cells (CD34(+) and lin-CD38-) was achieved by electroporation or microinjection small DNA fragments (SDF).
- Published
- 2002
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16. Deletion of the MAG1 DNA glycosylase gene suppresses alkylation-induced killing and mutagenesis in yeast cells lacking AP endonucleases.
- Author
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Xiao W, Chow BL, Hanna M, and Doetsch PW
- Subjects
- Alkylating Agents pharmacology, Alkylation, Aminopeptidases deficiency, Aminopeptidases genetics, Apurinic Acid chemistry, DNA Damage, DNA Repair Enzymes, DNA Replication, DNA, Fungal drug effects, DNA, Fungal genetics, DNA, Fungal metabolism, DNA-Directed DNA Polymerase physiology, Endodeoxyribonucleases deficiency, Endodeoxyribonucleases genetics, Gene Targeting, Haploidy, Insect Proteins genetics, Methyl Methanesulfonate pharmacology, Mutagens pharmacology, N-Glycosyl Hydrolases deficiency, N-Glycosyl Hydrolases genetics, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Aminopeptidases physiology, DNA Glycosylases, DNA Repair genetics, Endodeoxyribonucleases physiology, Insect Proteins physiology, Mutagenesis, N-Glycosyl Hydrolases physiology, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae Proteins physiology
- Abstract
DNA base excision repair (BER) is initiated by DNA glycosylases that recognize and remove damaged bases. The phosphate backbone adjacent to the resulting apurinic/apyrimidinic (AP) site is then cleaved by an AP endonuclease or glycosylase-associated AP lyase to invoke subsequent BER steps. We have used a genetic approach in Saccharomyces cerevisiae to address whether AP sites are blocks to DNA replication and the biological consequences if AP sites persist in the genome. We found that yeast cells deficient in the two AP endonucleases (apn1 apn2 double mutant) are extremely sensitive to killing by methyl methanesulfonate (MMS), a model DNA alkylating agent. Interestingly, this sensitivity can be reduced up to 2500-fold by deleting the MAG1 3-methyladenine DNA glycosylase gene, suggesting that Mag1 not only removes lethal base lesions, but also benign lesions and possibly normal bases, and that the resulting AP sites are highly toxic to the cells. This rescuing effect appears to be specific for DNA alkylation damage, since the mag1 mutation reduces killing effects of two other DNA alkylating agents, but does not alter the sensitivity of apn cells to killing by UV, gamma-ray or H(2)O(2). Our mutagenesis assays indicate that nearly half of spontaneous and almost all MMS-induced mutations in the AP endonuclease-deficient cells are due to Mag1 DNA glycosylase activity. Although the DNA replication apparatus appears to be incapable of replicating past AP sites, Polzeta-mediated translesion synthesis is able to bypass AP sites, and accounts for all spontaneous and MMS-induced mutagenesis in the AP endonuclease-deficient cells. These results allow us to delineate base lesion flow within the BER pathway and link AP sites to other DNA damage repair and tolerance pathways.
- Published
- 2001
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17. The Saccharomyces cerevisiae RAD6 group is composed of an error-prone and two error-free postreplication repair pathways.
- Author
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Xiao W, Chow BL, Broomfield S, and Hanna M
- Subjects
- Cell Division drug effects, Cell Division radiation effects, DNA Helicases, DNA-Binding Proteins genetics, DNA-Binding Proteins physiology, Dose-Response Relationship, Radiation, Fungal Proteins genetics, Methyl Methanesulfonate, Mutagenesis, Plasmids genetics, Time Factors, Ubiquitin-Conjugating Enzymes, Ubiquitin-Protein Ligases, Ultraviolet Rays, Adenosine Triphosphatases, DNA Repair genetics, DNA Replication, DNA-Directed DNA Polymerase, Ligases genetics, Ligases physiology, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins
- Abstract
The RAD6 postreplication repair and mutagenesis pathway is the only major radiation repair pathway yet to be extensively characterized. It has been previously speculated that the RAD6 pathway consists of two parallel subpathways, one error free and another error prone (mutagenic). Here we show that the RAD6 group genes can be exclusively divided into three rather than two independent subpathways represented by the RAD5, POL30, and REV3 genes; the REV3 pathway is largely mutagenic, whereas the RAD5 and the POL30 pathways are deemed error free. Mutants carrying characteristic mutations in each of the three subpathways are phenotypically indistinguishable from a single mutant such as rad18, which is defective in the entire RAD6 postreplication repair/tolerance pathway. Furthermore, the rad18 mutation is epistatic to all single or combined mutations in any of the above three subpathways. Our data also suggest that MMS2 and UBC13 play a key role in coordinating the response of the error-free subpathways; Mms2 and Ubc13 form a complex required for a novel polyubiquitin chain assembly, which probably serves as a signal transducer to promote both RAD5 and POL30 error-free postreplication repair pathways. The model established by this study will facilitate further research into the molecular mechanisms of postreplication repair and translesion DNA synthesis. In view of the high degree of sequence conservation of the RAD6 pathway genes among all eukaryotes, the model presented in this study may also apply to mammalian cells and predicts links to human diseases.
- Published
- 2000
- Full Text
- View/download PDF
18. Response of nicotine self-administration in the rat to manipulations of mu-opioid and gamma-aminobutyric acid receptors in the ventral tegmental area.
- Author
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Corrigall WA, Coen KM, Adamson KL, Chow BL, and Zhang J
- Subjects
- Analgesics, Opioid pharmacology, Animals, Biological Transport, Enkephalin, Ala(2)-MePhe(4)-Gly(5)- pharmacology, Male, Nicotine administration & dosage, Nicotine pharmacokinetics, Nicotinic Agonists administration & dosage, Nicotinic Agonists pharmacokinetics, Rats, Rats, Long-Evans, Self Administration, Ventral Tegmental Area drug effects, Nicotine pharmacology, Receptors, GABA metabolism, Receptors, Opioid, mu metabolism, Ventral Tegmental Area metabolism
- Abstract
Rationale: The mesolimbic dopamine system has been implicated in the reinforcing effects of nicotine, a drug which appears to act at least in part through the ventral tegmental area (VTA). Other neuronal elements in the VTA are important in drug reward. In particular, mu opioid receptors in the VTA have been shown to influence cocaine reinforcement., Objective: The aim of this study was to test whether the mu opioid receptors in the VTA also regulate the intake of nicotine., Methods: This research was carried out with animals trained to self-administer nicotine or cocaine, or to respond for food. Mu receptors were targeted with the selective agonist [D-Ala2,N-Me-Phe4,Gly-ol5]-enkephalin (DAMGO) and gamma-aminobutyric acid (GABA) receptors with the selective agonists baclofen and muscimol; each of these compounds was delivered by microinfusion into the VTA., Results: The mu-selective agonist DAMGO, tested over a dose range of 0.005-0.05 microg, had an effect at the highest dose only, where it produced a reduction in self-administration maintained by doses of either 10 microg/kg or 30 microg/kg per infusion of nicotine. Intra-VTA microinfusions of DAMGO did not reinstate extinguished responding previously established for nicotine, nor did they have prominent effects on operant behavior maintained by food. In contrast to the overall limited effects of DAMGO on nicotine self-administration, the GABA agonists muscimol and baclofen each reduced nicotine self-administration substantially when delivered into the VTA, whereas they were less effective against cocaine self-administration., Conclusions: The lesser effect of DAMGO microinfusions in the VTA on nicotine than cocaine self-administration is associated with the opposite efficacy of GABA agonists. These findings suggest that nicotine and cocaine differentially activate circuitry in which mu receptors are situated, especially GABAergic elements.
- Published
- 2000
- Full Text
- View/download PDF
19. The pedunculopontine tegmental nucleus and the role of cholinergic neurons in nicotine self-administration in the rat: a correlative neuroanatomical and behavioral study.
- Author
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Lança AJ, Adamson KL, Coen KM, Chow BL, and Corrigall WA
- Subjects
- Animals, Aziridines pharmacology, Choline analogs & derivatives, Choline pharmacology, Cholinergic Fibers ultrastructure, Denervation, Dihydro-beta-Erythroidine pharmacology, Excitatory Amino Acid Agonists pharmacology, Ibotenic Acid pharmacology, Male, Neuromuscular Blocking Agents pharmacology, Neurons cytology, Neurotoxins pharmacology, Pons cytology, Rats, Rats, Long-Evans, Self Administration, Tegmentum Mesencephali cytology, Tobacco Use Disorder physiopathology, Acetylcholine metabolism, Behavior, Animal drug effects, Behavior, Animal physiology, Cholinergic Fibers drug effects, Cholinergic Fibers metabolism, Nerve Degeneration chemically induced, Neurons drug effects, Neurons metabolism, Nicotine pharmacology, Nicotinic Agonists pharmacology, Pons drug effects, Pons metabolism, Tegmentum Mesencephali drug effects, Tegmentum Mesencephali metabolism
- Abstract
The objective of this study was to determine whether the pedunculopontine tegmental nucleus plays a role in the maintenance of nicotine self-administration, and whether the ascending cholinergic projection from this nucleus to midbrain dopamine neurons in the ventral tegmental area might be involved. Studies were done with rats trained to self-administer nicotine intravenously. Self-administration was examined before and after the pedunculopontine tegmental nucleus was lesioned with the ethylcholine mustard aziridinium ion, a selective cholinergic toxin. Lesions were assessed qualitatively and quantitatively in histological sections stained for either nicotinamide adenine dinucleotide phosphate-diaphorase histochemistry to identify cholinergic neurons, or for Nissl. Self-administration was also tested after an acute manipulation in which microinfusions of the nicotinic cholinergic antagonist dihydro-beta-erythroidine were made into the pedunculopontine tegmentum. Infusions of neurotoxin into the pedunculopontine tegmentum reduced nicotine self-administration behaviour when tested weeks later. Toxin treatment reduced the number of cholinergic neurons in the tegmentum, while largely sparing the non-cholinergic population in this area. Lesions were limited to the pedunculopontine area and did not extend to the neighboring laterodorsal tegmental nucleus or to the substantia nigra. Acute manipulation of the pedunculopontine tegmental nucleus with microinfusions of dihydro-beta-erythroidine also produced an attenuation of nicotine self-administration. Collectively these data show that the pedunculopontine tegmental nucleus is part of the neuronal circuitry mediating nicotine self-administration, and that the population of cholinergic neurons is likely a critical element.
- Published
- 2000
- Full Text
- View/download PDF
20. Genetic interactions between error-prone and error-free postreplication repair pathways in Saccharomyces cerevisiae.
- Author
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Xiao W, Chow BL, Fontanie T, Ma L, Bacchetti S, Hryciw T, and Broomfield S
- Subjects
- Base Sequence, DNA, Fungal, Fungal Proteins genetics, Mutation, Ubiquitin-Protein Ligases, DNA Repair genetics, DNA Replication, DNA-Directed DNA Polymerase, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins
- Abstract
Evidence obtained from recent studies supports the existence of an error-free postreplication repair (PRR) and a mutagenesis pathway within the Saccharomyces cerevisiae RAD6 DNA repair group. The MMS2 gene is the only known yeast gene involved in error-free PRR that, when mutated, significantly increases the spontaneous mutation rate. In this study, the mutational spectrum of the mms2 mutator was determined and compared to the wild type strain. In addition, mutagenenic effects and genetic interactions of the mms2 mutator and rev3 anti-mutator were examined with respect to forward mutations, frameshift reversions as well as amber and ochre suppressions. It was concluded from these results that the mms2 mutator phenotype is largely dependent on the functional REV3 gene. The synergistic effects of mms2 and rev3 mutations towards killing by a variety of DNA-damaging agents ruled out the possibility that MMS2 simply acts to suppress REV3 activity and favored the hypothesis that MMS2 and REV3 form two alternative subpathways within the RAD6 DNA repair pathway. Taken together, we propose that two pathways represented by MMS2 and REV3 deal with a similar range of endogenous and environmental DNA damage but with different biological consequences, namely, error-free repair and mutagenesis, respectively.
- Published
- 1999
- Full Text
- View/download PDF
21. Manipulations of mu-opioid and nicotinic cholinergic receptors in the pontine tegmental region alter cocaine self-administration in rats.
- Author
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Corrigall WA, Coen KM, Adamson KL, and Chow BL
- Subjects
- Animals, Enkephalin, Ala(2)-MePhe(4)-Gly(5)-, Enkephalins pharmacology, Male, Microinjections, Rats, Rats, Long-Evans, Self Administration, Somatostatin analogs & derivatives, Somatostatin pharmacology, Ventral Tegmental Area drug effects, Ventral Tegmental Area physiology, Cocaine administration & dosage, Pons physiology, Receptors, Nicotinic physiology, Receptors, Opioid, mu physiology
- Abstract
Rationale: The pedunculopontine tegmental nucleus (PPTg) has been implicated in drug reward, particularly in the development of dependence. However, little is known of the receptor systems within this nucleus which might be involved. Furthermore, some research suggests that the PPTg may also be part of the neuronal circuitry involved in established drug-taking behavior., Objective: The objective of these experiments was to examine the role of mu-opioid and nicotinic cholinergic mechanisms in the PPTg in cocaine self-administration., Methods: Microinfusions of mu-opioid and nicotinic receptor selective compounds were made into the PPTg of rats trained to self-administer cocaine intravenously, in the vicinity of cholinergic cells which are known to project to the midbrain dopamine neurons of the ventral tegmental area (VTA)., Results: The mu-opioid selective agonist DAMGO, tested at doses of 0, 0.05 and 0.5 microg, produced a dose-related reduction in the number of cocaine infusions obtained during the 1-h self-administration sessions. The mu-selective antagonist CTOP (0-2 microg) and nicotine (0-10 microg) did not produce significant changes in cocaine self-administration. Microinfusions of the nicotinic antagonist dihydro-beta-erythroidine (0-30 microg) produced a small but significant increase in cocaine-maintained responding., Conclusions: These data show that mu-opioid mechanisms in the PPTg can influence cocaine self-administration markedly. Moreover, the data demonstrate that PPTg circuitry can influence drug reward in already-established drug-reinforced behavior, as well as during the development of dependence (as shown by previous research).
- Published
- 1999
- Full Text
- View/download PDF
22. The mu opioid agonist DAMGO alters the intravenous self-administration of cocaine in rats: mechanisms in the ventral tegmental area.
- Author
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Corrigall WA, Coen KM, Adamson KL, and Chow BL
- Subjects
- Animals, Dopamine Uptake Inhibitors pharmacology, Enkephalin, Ala(2)-MePhe(4)-Gly(5)-, Injections, Intravenous, Male, Rats, Rats, Long-Evans, Receptors, Opioid, delta agonists, Receptors, Opioid, delta antagonists & inhibitors, Self Administration, Ventral Tegmental Area drug effects, Analgesics, Opioid pharmacology, Cocaine pharmacology, Enkephalins pharmacology, Receptors, Opioid, mu agonists, Ventral Tegmental Area metabolism
- Abstract
Microinfusions of the opioid subtype-selective agonist DAMGO and antagonist CTOP into the ventral tegmental area (VTA) were used to examine the role of mu opioid receptors in this area of the mesolimbic dopamine system in regulating cocaine reinforcement. Long-Evans rats were trained to self-administer cocaine intravenously and prepared with intracranial cannulae directed to the VTA. At doses of cocaine on the descending limb of the cocaine dose-response curve, the mu-selective agonist DAMGO produced a dose-related decrease in cocaine self-administration when delivered by microinfusion into the VTA. At a dose of cocaine on the ascending limb of the self-administration dose-response curve, DAMGO microinfusions produced an increase in responding for the drug. The mu-selective antagonist CTOP produced small effects on cocaine self-administration. A kappa-selective agonist and antagonist (U50,488 and norbinaltorphimine, respectively) produced either no effects or small effects that did not show consistent trends with dose. These experiments suggest that the mu agonist DAMGO is able to shift the dose-response curve for cocaine self-administration to the left. This effect appears to be specific for mu as compared to kappa agonists. These data are consistent with the known differential distribution of opioid receptor subtypes within the VTA, and with the effects of opioid compounds in the VTA on dopamine release in the mesolimbic synaptic field. The data show that a mu opioid mechanism in the somatodendritic region can alter reinforcement processes for cocaine, which acts predominantly at the terminal field of dopamine cells.
- Published
- 1999
- Full Text
- View/download PDF
23. The products of the yeast MMS2 and two human homologs (hMMS2 and CROC-1) define a structurally and functionally conserved Ubc-like protein family.
- Author
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Xiao W, Lin SL, Broomfield S, Chow BL, and Wei YF
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cell Differentiation, Conserved Sequence, DNA Repair, Genetic Complementation Test, Humans, Molecular Sequence Data, Multigene Family, Mutagenesis, Proto-Oncogene Proteins c-fos biosynthesis, RNA, Messenger isolation & purification, Rats, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae genetics, Sequence Homology, Amino Acid, Signal Transduction, Tissue Distribution, Ubiquitin-Conjugating Enzymes, Ligases genetics, Trans-Activators genetics, Ubiquitins
- Abstract
Eukaryotic genes encoding ubiquitin-congugating enzyme (Ubc)-like proteins have been isolated from both human and yeast cells. The CROC-1 gene was isolated by its ability to transactivate c- fos expression in cell culture through a tandem repeat enhancer sequence. The yeast MMS2 gene was cloned by its ability to complement the methyl methanesulfonate sensitivity of the mms2-1 mutant and was later shown to be involved in DNA post-replication repair. We report here the identification of a human MMS2 ( hMMS2 ) cDNA encoding a novel human Ubc-like protein. hMMS2 and CROC-1 share >90% amino acid sequence identity, but their DNA probes hybridize to distinct transcripts. hMMS2 and CROC-1 also share approximately 50% identity and 75% similarity with the entire length of yeast Mms2. Unlike CROC-1 , whose transcript appears to be elevated in all tumor cell lines examined, the hMMS2 transcript is only elevated in some tumor cell lines. Collectively, these results indicate that eukaryotic cells may contain a highly conserved family of Ubc-like proteins that play roles in diverse cellular processes, ranging from DNA repair to signal transduction and cell differentiation. The hMMS2 and CROC-1 genes are able to functionally complement the yeast mms2 defects with regard to sensitivity to DNA damaging agents and spontaneous mutagenesis. Conversely, both MMS2 and hMMS2 were able to transactivate a c- fos - CAT reporter gene in Rat-1 cells in a transient co-transfection assay. We propose that either these proteins function in a common cellular process, such as DNA repair, or they exert their diverse biological roles through a similar biochemical interaction relative to ubiquitination.
- Published
- 1998
- Full Text
- View/download PDF
24. MMS2, encoding a ubiquitin-conjugating-enzyme-like protein, is a member of the yeast error-free postreplication repair pathway.
- Author
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Broomfield S, Chow BL, and Xiao W
- Subjects
- Alleles, Amino Acid Sequence, Base Sequence, Chromosome Mapping, Cloning, Molecular, DNA Replication, DNA-Directed DNA Polymerase genetics, DNA-Directed DNA Polymerase metabolism, Epistasis, Genetic, Fungal Proteins metabolism, Fungal Proteins physiology, Fungal Proteins radiation effects, Ligases genetics, Ligases metabolism, Methyl Methanesulfonate pharmacology, Molecular Sequence Data, Mutagenesis, Open Reading Frames, Saccharomyces cerevisiae drug effects, Ubiquitin-Conjugating Enzymes, Ubiquitin-Protein Ligases, Ultraviolet Rays, DNA Repair, DNA, Fungal physiology, Fungal Proteins genetics, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins
- Abstract
Among the three Saccharomyces cerevisiae DNA repair epistasis groups, the RAD6 group is the most complicated and least characterized, primarily because it consists of two separate repair pathways: an error-free postreplication repair pathway, and a mutagenesis pathway. The rad6 and rad18 mutants are defective in both pathways, and the rev3 mutant affects only the mutagenesis pathway, but a yeast gene that is involved only in error-free postreplication repair has not been reported. We cloned the MMS2 gene from a yeast genomic library by functional complementation of the mms2-1 mutant [Prakash, L. & Prakash, S. (1977) Genetics 86, 33-55]. MMS2 encodes a 137-amino acid, 15.2-kDa protein with significant sequence homology to a conserved family of ubiquitin-conjugating (Ubc) proteins. However, Mms2 does not appear to possess Ubc activity. Genetic analyses indicate that the mms2 mutation is hypostatic to rad6 and rad18 but is synergistic with the rev3 mutation, and the mms2 mutant is proficient in UV-induced mutagenesis. These phenotypes are reminiscent of a pol30-46 mutant known to be impaired in postreplication repair. The mms2 mutant also displayed a REV3-dependent mutator phenotype, strongly suggesting that the MMS2 gene functions in the error-free postreplication repair pathway, parallel to the REV3 mutagenesis pathway. Furthermore, with respect to UV sensitivity, mms2 was found to be hypostatic to the rad6Delta1-9 mutation, which results in the absence of the first nine amino acids of Rad6. On the basis of these collective results, we propose that the mms2 null mutation and two other allele-specific mutations, rad6Delta1-9 and pol30-46, define the error-free mode of DNA postreplication repair, and that these mutations may enhance both spontaneous and DNA damage-induced mutagenesis.
- Published
- 1998
- Full Text
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25. Identification, chromosomal mapping and tissue-specific expression of hREV3 encoding a putative human DNA polymerase zeta.
- Author
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Xiao W, Lechler T, Chow BL, Fontanie T, Agustus M, Carter KC, and Wei YF
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Chromosome Mapping, DNA, Complementary, Humans, In Situ Hybridization, Fluorescence, Molecular Sequence Data, Saccharomyces cerevisiae enzymology, Sequence Homology, Amino Acid, Chromosomes, Human, Pair 1, DNA-Directed DNA Polymerase genetics, Fungal Proteins genetics, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins
- Abstract
The Saccharomyces cerevisiae REV3 gene encodes the catalytic subunit of a non-essential DNA polymerase zeta, which is required for mutagenesis. The rev3 mutants significantly reduce both spontaneous and DNA damage-induced mutation rates. We have identified human cDNA clones from two different libraries whose deduced amino acid sequences bear remarkable homology to the yeast Rev3, and named this gene hREV3. The hREV3 gene was mapped to chromosome 1p32-33 by fluorescence in situ hybridization. The hREV3 encodes an mRNA of >10 kb, and its expression varies in different tissues and appears to be elevated in some but not all of the tumor cell lines we have examined. In light of recent reports of a putative mouse REV3, these results indicate that mammalian cells may also contain a mutagenic pathway which aids in cell survival at the cost of increased mutation.
- Published
- 1998
- Full Text
- View/download PDF
26. Mms4, a putative transcriptional (co)activator, protects Saccharomyces cerevisiae cells from endogenous and environmental DNA damage.
- Author
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Xiao W, Chow BL, and Milo CN
- Subjects
- Amino Acid Sequence, Base Sequence, Flap Endonucleases, Methyl Methanesulfonate pharmacology, Molecular Sequence Data, Mutagens pharmacology, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae radiation effects, Transcription Factors genetics, Ultraviolet Rays, DNA Damage, Fungal Proteins genetics, Genes, Fungal physiology, Saccharomyces cerevisiae drug effects, Saccharomyces cerevisiae Proteins, Trans-Activators genetics, Transcriptional Activation
- Abstract
mms4-1 is one of several Saccharomyces cerevisiae mutants that exhibit an increased sensitivity to methyl methanesulfonate (MMS), but not to UV or X-rays. We have isolated the MMS4 gene by functional complementation of the MMS-sensitive phenotype in the mms4-1 strain. The MMS4 gene encodes a 691-amino acid, 78.7-kDa protein. The deduced Mms4 protein does not show significant homology to any of the known proteins in the database. However, several putative functional domains suggest that it may be a nuclear protein capable of interacting with other proteins. Examination of the mms4delta mutant phenotype indicates that the mutation not only sensitizes DNA to methylating and ethylating agents, but also to other DNA damage that blocks DNA replication. However, the mms4delta mutant appears to be more sensitive to chronic treatment than to acute treatment by DNA-damaging agents. Furthermore, the spontaneous mutation rate increases significantly in the mms4delta mutant. Mms4 alone, when fused to a Gal4 DNA-binding domain, is able to activate P(GAL1)-lacZ and P(GAL1)-HIS3 reporter genes in a two-hybrid system; the Mms4 transactivation domain maps to the highly acidic N-terminal region. These results collectively suggest that Mms4 may function as a transcriptional (co)activator and play an important role in DNA repair and/or synthesis.
- Published
- 1998
- Full Text
- View/download PDF
27. Synergism between yeast nucleotide and base excision repair pathways in the protection against DNA methylation damage.
- Author
-
Xiao W and Chow BL
- Subjects
- Carrier Proteins genetics, DNA Repair Enzymes, Endodeoxyribonucleases genetics, Endonucleases genetics, Fungal Proteins genetics, Mutagenesis, Saccharomyces cerevisiae genetics, Single-Strand Specific DNA and RNA Endonucleases, DNA Damage, DNA Methylation, DNA Repair, DNA, Fungal metabolism, DNA-Binding Proteins, Saccharomyces cerevisiae Proteins
- Abstract
The treatment of cells with simple DNA methylating agents such as methyl methanesulfonate (MMS) results in genotoxic lesions, including 3-methyladenine which blocks DNA replication. All the organisms studied to date contain an alkylation-specific base excision repair pathway. In the yeast Saccharomyces cerevisiae, the base excision repair pathway is initiated by a Mag1 3-methyladenine DNA glycosylase that removes the damaged base, followed by the Apn1 apurinic/apyrimidinic endonuclease which cleaves the DNA strand at the abasic site for subsequent repair and synthesis. Several nucleotide excision repair pathway mutants display only slightly increased sensitivity to killing by MMS, indicating that nucleotide excision repair per se does not play a major role in the repair of DNA methylation damage. However, mag1 and apn1 mutants that are also defective in nucleotide excision repair are extremely sensitive to MMS-induced killing and the effects are synergistic. These observations suggest that nucleotide excision repair and alkylation-specific base excision repair provide alternative pathways for the repair of DNA methylation damage. In addition to their role in nucleotide excision repair, Rad1 and Rad10 form a complex that is involved in recombination repair. It was found that the apn1 rad1 and apn1 rad10 double mutants have a growth defect and are significantly more sensitive to MMS killing than apn1 rad2 and apn1 rad4 double mutants in a gradient plate assay. Furthermore, the apn1 rad1 double mutant increased both the spontaneous and MMS-induced mutation frequency. Thus, the recombination repair defects of rad1 and rad10 may confer an additional synergistic effect when combined with the apn1 mutation.
- Published
- 1998
- Full Text
- View/download PDF
28. Effect of naltrexone and its derivatives, nalmefene and naltrindole, on conditioned anticipatory behaviour and saccharin intake in rats.
- Author
-
Chow BL, Sellers EM, and Tomkins DM
- Subjects
- Animals, Cues, Dose-Response Relationship, Drug, Drinking Behavior drug effects, Male, Rats, Rats, Wistar, Saccharin pharmacology, Sweetening Agents pharmacology, Taste drug effects, Conditioning, Operant drug effects, Naltrexone analogs & derivatives, Naltrexone pharmacology, Narcotic Antagonists pharmacology
- Abstract
Drug craving, the desire to re-experience the effects of a psychoactive substance, may be an important influence on drug-seeking and drug-taking behaviour. In rats, drug-seeking behaviour can be operationalized as conditioned anticipatory behaviour, evidenced by frequent visits to, and an increased time spent and distance travelled in, the drug administration area prior to the availability of the reinforcer. The effects of the opioid antagonist, naltrexone, and its derivatives, nalmefene and naltrindole, on conditioned anticipatory behaviour and drinking-associated behaviour and fluid intake during the access phase were examined. Male Wistar rats were trained to consume 0.1% saccharin and water in a distinct environment in a free-choice limited-access procedure. Naltrexone (0.3, 1 mg/kg) decreased conditioned anticipatory behaviour and drinking-associated behaviour in the saccharin zone without affecting the corresponding behaviour in the water zone. Its derivatives had different effects. Nalmefene (0.1 mg/kg) increased drinking-associated behaviour but not conditioned anticipatory behaviour, whereas naltrindole (1, 2 mg/kg) modestly decreased conditioned anticipatory behaviour but not drinking-associated behaviour. Naltrexone (0.3, 1 mg/kg) and naltrindole (1, 2 mg/kg), but not nalmefene, selectively decreased saccharin intake. These findings suggest that the blockade of selective opioid receptors may differentially alter conditioned anticipatory behaviour, drinking-associated behaviour and consumption levels, and that these behaviours can be modified separately.
- Published
- 1997
- Full Text
- View/download PDF
29. The repair of DNA methylation damage in Saccharomyces cerevisiae.
- Author
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Xiao W, Chow BL, and Rathgeber L
- Subjects
- Adenosine Triphosphatases genetics, Alkylation, DNA Glycosylases, DNA Helicases genetics, DNA, Fungal genetics, DNA-Binding Proteins genetics, Fungal Proteins genetics, Genes, Fungal, Ligases genetics, Methyl Methanesulfonate pharmacology, Mutation, N-Glycosyl Hydrolases genetics, Rad52 DNA Repair and Recombination Protein, Recombination, Genetic, Saccharomyces cerevisiae drug effects, Ubiquitin-Conjugating Enzymes, DNA Methylation, DNA Repair, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins
- Abstract
The major genotoxicity of methyl methanesulfonate (MMS) is due to the production of a lethal 3-methyladenine (3MeA) lesion. An alkylation-specific base-excision repair pathway in yeast is initiated by a Mag1 3MeA DNA glycosylase that removes the damaged base, followed by an Apn1 apurinic/ apyrimidinic endonuclease that cleaves the DNA strand at the abasic site for subsequent repair. MMS is also regarded as a radiomimetic agent, since a number of DNA radiation-repair mutants are also sensitive to MMS. To understand how these radiation-repair genes are involved in DNA methylation repair, we performed an epistatic analysis by combining yeast mag1 and apn1 mutations with mutations involved in each of the RAD3, RAD6 and RAD52 groups. We found that cells carrying rad6, rad18, rad50 and rad52 single mutations are far more sensitive to killing by MMS than the mag1 mutant, that double mutants were much more sensitive than either of the corresponding single mutants, and that the effects of the double mutants were either additive or synergistic, suggesting that post-replication and recombination-repair pathways recognize either the same lesions as MAG1 and APN1, or else some differ- ent lesions produced by MMS treatment. Lesions handled by recombination and post replication repair are not simply 3MeA, since over-expression of the MAG1 gene does not offset the loss of these pathways. Based on the above analyses, we discuss possible mechanisms for the repair of methylation damage by various pathways.
- Published
- 1996
- Full Text
- View/download PDF
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