1. In silico analysis of trehalose biosynthesis genes provides clues to reveal its roles in Avicennia marina adaptation to tidal submergence.
- Author
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Song LY, Guo ZY, Liu JY, Xu CQ, Li J, Zhang LD, Song SW, and Zheng HL
- Subjects
- Computer Simulation, Adaptation, Physiological genetics, Phylogeny, Genes, Plant, Plant Leaves metabolism, Plant Leaves genetics, Trehalose metabolism, Trehalose biosynthesis, Avicennia genetics, Avicennia metabolism, Plant Proteins genetics, Plant Proteins metabolism, Gene Expression Regulation, Plant
- Abstract
Trehalose has an important function for alleviating various abiotic stress in plants. Nevertheless, the functional and evolutionary characteristics of trehalose biosynthesis genes in mangrove plants is not documented. Here, using typical mangrove Avicennia marina, we found the trehalose content decreased in the roots and leaves and T6P increased significantly in the leaves under tidal submergence. Then, the basic physicochemical properties and gene structure of trehalose biosynthesis genes (AmTPS and AmTPP), and the conserved domain and motifs of AmTPS and AmTPP proteins were analyzed. The collinearity analysis and Ka/Ks values indicated that AmTPS and AmTPP are evolutionarily conserved. Tissue-specific expression profiling showed that most AmTPS and AmTPP genes have tissue specificity. RNA-Seq analysis showed that five AmTPS genes were markedly up-regulated in A. marina treated with tidal submergence. Subcellular localization analysis revealed three genes including AmTPS10B, AmTPS11A and AmTPS11C out of these five up-regulated AmTPS genes work in plasma membrane, cytoplasm and nucleus. Finally, integrative analysis of bioinformatics and RNA-Seq analysis were performed to excavate transcription factors that may regulate AmTPS and AmTPP genes in A. marina response to submergence. Taken together, these findings provide new insights into the response to tidal submergence in A. marina at the aspect of trehalose., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests:Hai-Lei Zheng reports financial support was provided by National Natural Science Foundation of China. Hai-Lei Zheng reports financial support was provided by National Key Research and Development Program of China. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Masson SAS. All rights reserved.)
- Published
- 2025
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