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The ribosome small subunit (SSU) is assembled by the SSU processome which contains approximately 70 non-ribosomal protein factors. Whilst the biochemical mechanisms of the SSU processome in 18S rRNA processing and maturation have been extensively studied, how SSU processome components enter the nucleolus has yet to be systematically investigated. Here, in examining the nucleolar localization of 50 human SSU processome components, we found that UTP3, together with another 24 proteins, enter the nucleolus autonomously. For the remaining 25 proteins we found that UTP3/SAS10 assists the nucleolar localization of five proteins (MPP10, UTP25, EMG1 and the two UTP-B components UTP12 and UTP13), likely through its interaction with nuclear importin α. This 'ferrying' function of UTP3 was then confirmed as conserved in the zebrafish. We also found that knockdown of human UTP3 impairs cleavage at the A0-site while loss-of-function of either utp3/sas10 or utp13/tbl3 in zebrafish causes the accumulation of aberrantly processed 5'ETS products, which highlights the crucial role of UTP3 in mediating 5'ETS processing. Mechanistically, we found that UTP3 facilitates the degradation of processed 5'ETS by recruiting the RNA exosome component EXOSC10 to the nucleolus. These findings lay the groundwork for studying the mechanism of cytoplasm-to-nucleolus trafficking of SSU processome components., (© The Author(s) 2024. Published by Oxford University Press on behalf of Nucleic Acids Research.)

The zebrafish intestine and liver, as in other vertebrates, are derived from the endoderm. Great effort has been devoted to deciphering the molecular mechanisms controlling the specification and development of the zebrafish intestine and liver; however, genome-wide comparison of the transcriptomes between these two organs at the larval stage remains unexplored. There is a lack of extensive identification of feature genes marking specific cell types in the zebrafish intestine and liver at 5 days post-fertilization, when the larval fish starts food intake. In this report, through RNA sequencing and single-cell RNA sequencing of intestines and livers separately dissected from wild-type zebrafish larvae at 5 days post-fertilization, together with the experimental validation of 47 genes through RNA whole-mount in situ hybridization, we identified not only distinctive transcriptomes for the larval intestine and liver, but also a considerable number of feature genes for marking the intestinal bulb, mid-intestine and hindgut, and for marking hepatocytes and cholangiocytes. Meanwhile, we identified 135 intestine- and 97 liver-enriched transcription factor genes in zebrafish larvae at 5 days post-fertilization. Our findings provide rich molecular and cellular resources for studying cell patterning and specification during the early development of the zebrafish intestine and liver.

Bruising is one of the main problems in the post-harvest grading and processing of ' Zaozhong 6 ' loquats, reducing the economic value of loquats, and even food quality and safety problems are caused by it. Therefore, one of the main tasks in the post-harvest processing of loquats is to detect whether loquats are bruised, as well as the degree of bruising of loquats, to reduce the loss by proper treatment. An appropriate dimensionality reduction method can be used to reduce the redundancy of variables and improve the detection speed. The multispectral analysis method (MAM) has the advantage of accurate, rapid, and nondestructive detection, which was proposed to identify the different bruising degrees of loquats in this study. Firstly, the visible and near-infrared region (Vis-NIR, 400-1000 nm), the visible region (Vis, 400-780 nm), and the near-infrared region (NIR, 781-1000 nm) were analyzed using principal component analysis (PCA) to obtain the spectral regions and PC vectors, which could be used to effectively distinguish bruised loquats from normal loquats. Then, based on the selected second PC (PC2) score images, a morphological segmentation method (MSM) was proposed to distinguish bruised loquats from normal loquats. Furthermore, the weight coefficients of corresponding wavelength points of different degrees of bruising of loquats were analyzed, and the local extreme points and both sides of the interval were selected as the characteristic wavelength points for multi-spectral image processing. A gray level co-occurrence matrix (GLCM) was used to extract texture features and gray information from two-band ratio images K 782/999 . Finally, the MAM was proposed to detect the degree of bruising of loquats, which included the spectral data of three characteristic wavelength points in the NIR region coupled with texture features of the two-band ratio images, and the classification accuracy was 91.3%. This study shows that the MAM can be used as an effective dimensionality reduction method. The method not only improves the effect of prediction but also simplifies the process of prediction and ensures the accuracy of classification. The MSM can be used for rapid detection of normal and bruised fruits, and the MAM can be used to classify the degree of bruising of bruised fruits. Consequently, the processed methods are effective and can be used for the rapid and nondestructive detection of the degree of bruising of fruit.