1. Peptide-to-Small Molecule: Discovery of Non-Covalent, Active-Site Inhibitors of β-Herpesvirus Proteases.
- Author
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Yoshida S, Sako Y, Nikaido E, Ueda T, Kozono I, Ichihashi Y, Nakahashi A, Onishi M, Yamatsu Y, Kato T, Nishikawa J, and Tachibana Y
- Abstract
Viral proteases, the key enzymes that regulate viral replication and assembly, are promising targets for antiviral drug discovery. Herpesvirus proteases are enzymes with no crystallographically confirmed noncovalent active-site binders, owing to their shallow and polar substrate-binding pockets. Here, we applied our previously reported "Peptide-to-Small Molecule" strategy to generate novel inhibitors of β-herpesvirus proteases. Rapid selection with a display technology was used to identify macrocyclic peptide 1 bound to the active site of human cytomegalovirus protease (HCMV
Pro ) with high affinity, and pharmacophore queries were defined based on the results of subsequent intermolecular interaction analyses. Membrane-permeable small molecule 19 , designed de novo according to this hypothesis, exhibited enzyme inhibitory activity (IC50 = 10-6 to 10-7 M) against β-herpesvirus proteases, and the design concept was proved by X-ray cocrystal analysis., Competing Interests: The authors declare the following competing financial interest(s): S.Y., Y.S., E.N., T.U., I.K., Y.I., A.N., M.O., Y.Y., T.K., and Y.T. are employees of SHIONOGI & Co., Ltd. J.N. is an employee of PeptiDream Inc. S.Y., E.N., T.U., Y.I., and T.K. are shareholders in SHIONOGI & Co., Ltd. J.N. is a shareholder of PeptiDream Inc., (© 2023 American Chemical Society.)- Published
- 2023
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