1. Rapid genomic testing: Can the challenges be metin routine clinical practice?.
- Author
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Lunke S., Stapleton R., Kumble S., Phelan D., Chong B., Fernandez M.F., Marum J., Boys A., Leng C., Tamayo M., Chong A., Riseley J., Yeung A., Brett G., Jarmolowicz A., Prawer Y., Elliott J., Martyn M., Tan T., Gaff C., White S.M., Regan M., Hunter M., Stark Z., Tan N.B., Delatycki M., Savarirayan R., Lunke S., Stapleton R., Kumble S., Phelan D., Chong B., Fernandez M.F., Marum J., Boys A., Leng C., Tamayo M., Chong A., Riseley J., Yeung A., Brett G., Jarmolowicz A., Prawer Y., Elliott J., Martyn M., Tan T., Gaff C., White S.M., Regan M., Hunter M., Stark Z., Tan N.B., Delatycki M., and Savarirayan R.
- Abstract
Background: Accurate and timely diagnosis is critical in providing prognostic information and guiding treatment in acutely unwell patients with suspected monogenic disorders. Aim(s): We describe the development and implementation of a rapid genomic diagnosis program in a routine clinical setting. Method(s): Rapid singleton wholeexome sequencing was performed in acutely unwell patients with suspected monogenic disorders from two pediatric tertiary centers. Technical, organizational, and clinician barriers to implementation were addressed through a cycle of continuous audit and improvement. Service performance parameters and the diagnostic and clinical utility of providing rapid WES were assessed. Result(s): During the study period, time to result reduced from 109 days to 13 days (median 18 days), and this was accompanied by changes in referral and test initiation patterns. Of 26 enrolled patients, 14 (54%) received a molecular genetic diagnosis. Clinical management changed in nine diagnosed patients (64%), including the provision of lifesaving treatment, avoidance of invasive biopsies, and palliative care guidance. A result was provided prior to death or discharge from hospital in 16 of 26 cases (62%). The rapid diagnosis of a riboflavin transporter defect in one patient is estimated to have saved 113 days in intensive care (AUD$508,500) compared to providing the result with a standard turnaround time. Discussion(s): The provision of rapid genomic results in acutely unwell patients with suspected monogenic disorders is feasible in the routine clinical setting and has high diagnostic and clinical utility. It challenges traditional clinical and laboratory genetics service models, and requires a whole-of-system approach for successful implementation.
- Published
- 2018