1. A study of over 15,000 dogs identifies the major locus for canine non-generalized tonic-clonic seizures
- Author
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Harmas, Tiina, Forman, Oliver, Fischer, Andrea, Freyer, Jamie, Matz, Madlen Sarah, Fukata, Masaki, Fukata, Yuko, Nessler, Jasmin, Volk, Holger A, Tipold, Andrea, Mandigers, Paul, Leegwater, Peter, Di Risio, Luisa, Ricketts, Sally L., Jenkins, Christopher, Jokinen, Tarja, Meervenne, Sofie van, Minor, Katie, Leeb, Tosso, Hytönen, Marjo K, Lohi, Hannes, Harmas, Tiina, Forman, Oliver, Fischer, Andrea, Freyer, Jamie, Matz, Madlen Sarah, Fukata, Masaki, Fukata, Yuko, Nessler, Jasmin, Volk, Holger A, Tipold, Andrea, Mandigers, Paul, Leegwater, Peter, Di Risio, Luisa, Ricketts, Sally L., Jenkins, Christopher, Jokinen, Tarja, Meervenne, Sofie van, Minor, Katie, Leeb, Tosso, Hytönen, Marjo K, and Lohi, Hannes
- Abstract
Dogs with idiopathic epilepsy (IE) have a lowered threshold for seizures, including generalized tonic-clonic (GTC) and focal seizures (FS). In some breeds, like Labrador Retrievers (LR), paroxysmal dyskinesia (PD) causes episodes which may resemble FS. Despite the genetic susceptibility of IE in many breeds, the contributing variants remain largely unknown. We aimed to identify the major loci and common variants associated with the risk of IE and PD in dogs by performing large-scale GWAS in two cohorts. The first cohort included 280 LR categorized based on their diagnoses (IE vs PD) and episode types (GTC vs non-GTC) and 460 controls. The second multi-breed cohort included ~5,000 dogs with reported seizures and 10,000 controls from > 100 breeds. Analyses in both cohorts revealed a 27.8 kb risk haplotype overlapping ADAM23 on CFA 37. The risk haplotype was associated with non-GTC seizures and PD in LR, but not with GTC seizures. WGS analyses revealed two non-synonymous exonic variants in ADAM23 within the same coding triplet in exon 12. Preliminary functional studies in cell cultures suggest an effect of these variants on ADAM23 interaction with LGI1, previously implicated in epilepsy. We also continue Bayesian analyses, which suggest additional associated loci and candidate genes. This is the largest GWAS of canine epilepsy, which will help us better understand the genetic background of the most common neurological disease in dogs.
- Published
- 2024