80 results on '"A. K. Kondapi"'
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2. Restrictions and supplementations effects of vitamins B6, B9 and B12 on growth, vasculogenesis and senescence of BG01V human embryonic stem cell derived embryoid bodies
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Anand K. Kondapi, Rajanna Ajumeera, Venkanna Bhanothu, and Vijayalakshmi Venkatesan
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Senescence ,Nutrition and Dietetics ,Vasculogenesis ,Endocrinology, Diabetes and Metabolism ,Internal Medicine ,Embryoid body ,Biology ,Embryonic stem cell ,Cell biology - Published
- 2021
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3. Epoxydicoumarin Derivative is a Novel Non‐Nucleoside TLR8 Agonist: Screening, Synthesis and Biological Evaluation
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Naresh Damuka, Anand K. Kondapi, Kurumurthy Kammari, Angamba Meetei Potshangbam, and Vaibhav Vindal
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Agonist ,Innate immune system ,Drug discovery ,medicine.drug_class ,General Chemistry ,TLR8 ,Coumarin ,chemistry.chemical_compound ,chemistry ,Biochemistry ,medicine ,Nucleoside ,Derivative (chemistry) ,Biological evaluation - Published
- 2021
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4. Surfactant‐ and Biosurfactant‐Based Therapeutics
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Anand K. Kondapi
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Pulmonary surfactant ,Chemistry ,Drug delivery ,Nanotechnology - Published
- 2021
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5. Lactoferrin nanoparticles coencapsulated with curcumin and tenofovir improve vaginal defense against HIV-1 infection
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Seetharam Deepa, Prashant Kumar, Anand K. Kondapi, and Samrajya Lakshmi Yeruva
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Drug ,Curcumin ,media_common.quotation_subject ,Biomedical Engineering ,Medicine (miscellaneous) ,HIV Infections ,Bioengineering ,Development ,Pharmacology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,In vivo ,Microbicide ,Animals ,General Materials Science ,030212 general & internal medicine ,Tenofovir ,Cytotoxicity ,IC50 ,030304 developmental biology ,media_common ,0303 health sciences ,biology ,Chemistry ,Lactoferrin ,In vitro ,Rats ,HIV-1 ,biology.protein ,Nanoparticles ,Female - Abstract
Aim: We report here the development of tenofovir- and curcumin-loaded lactoferrin nanoparticles (TCNPs) as an HIV-microbicide. Materials & methods: TCNPs were subjected to various physicochemical characterization experiments, followed by in vitro and in vivo experiments to assess their efficacy. Results: TCNPs had a diameter of 74.31 ± 2.56 nm with a gross encapsulation of more than 61% for each drug. Nanoparticles were effective against HIV-1 replication, with an IC50 of 1.75 μM for curcumin and 2.8 μM for tenofovir. TCNPs provided drug release at the application site for up to 8–12 h, with minimal leakage into the systemic circulation. TCNPs showed spermicidal activity at ≥200 μM and induced minimal cytotoxicity and inflammation in the vaginal epithelium as revealed by histopathological and ELISA studies. Conclusion: We demonstrated that TCNPs could serve as a novel anti-HIV microbicidal agent in rats. [Formula: see text]
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- 2021
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6. Discovery of dual cation-π inhibitors of acetylcholinesterase: design, synthesis and biological evaluation
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Anand K. Kondapi, Vaibhav Vindal, Naresh Damuka, Angamba Meetei Potshangbam, Kurumurthy Kammari, and Ravindranath S. Rathore
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Pharmacology ,chemistry.chemical_classification ,Drug discovery ,General Medicine ,Acetylcholinesterase ,Combinatorial chemistry ,In vitro ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Enzyme ,chemistry ,030220 oncology & carcinogenesis ,Cholinergic ,Pyridinium ,Binding site ,IC50 ,030217 neurology & neurosurgery - Abstract
Alzheimer's disease (AD) is a widespread dementia-related disease affecting mankind worldwide. A cholinergic hypothesis is considered the most effective target for treating mild to moderate AD. Present study aims to identify new scaffolds for inhibiting acetylcholinesterase activity. To find Acetylcholinesterase (AChE) inhibitors, we computationally designed and chemically synthesized a series of cation-π inhibitors based on novel scaffolds that potentially block AChE. The cytotoxic effect of inhibitors were determined by MTT. AChE inhibition experiment was performed by Ellman and the Amplex red method in the SH-SY5Y cell line. Further, the experimental data on designed compounds corroborate with various computational studies that further elucidate the binding mode of interactions and binding affinity. The inhibitors were designed to promote dual binding and were incorporated with groups that may facilitate any of the cation- π, hydrophobic and hydrogen-bonding interactions with the conserved and hot-spot residues in the binding site. The inhibitors possessing pyridine-N-methylated pyridinium group and thereby involved in cation- π interactions are highly active relative to the marketed drug Donepezil as well as the designed analogs that lack the group. In vitro enzymatic Ellman assay and Amplex red assay on SH-SY5Y cell line estimated IC50 of the designed compounds in nM range with one having binding affinity higher than Donepezil. Compounds exhibit no significant toxicity up to µM range. Compounds possessing methylidenecyclohexanone scaffolds, with characteristic dual-binding and involving strong cation-π interactions, serves as new leads for AChE and opens a new direction for drug discovery efforts.
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- 2020
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7. Design, synthesis, and evaluation of HIV-1 entry inhibitors based on broadly neutralizing antibody 447-52D and gp120 V3loop interactions
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Akhila Bommakanti, Anand K. Kondapi, Jagadeesh Senapathi, and Srinivas Vangara
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Virtual screening ,Dose-Response Relationship, Drug ,Molecular Structure ,Chemistry ,Anti-HIV Agents ,viruses ,In silico ,Organic Chemistry ,Microbial Sensitivity Tests ,V3 loop ,HIV Envelope Protein gp120 ,Gp41 ,Biochemistry ,Small molecule ,Virus ,Cell biology ,Structure-Activity Relationship ,Viral entry ,Drug Design ,Drug Discovery ,HIV-1 ,Humans ,Molecular Biology ,Tropism ,Broadly Neutralizing Antibodies - Abstract
The third variable loop region (V3 loop) on gp120 plays an important role in cellular entry of HIV-1. Its interaction with the cellular CD4 and coreceptors is an important hallmark in facilitating the bridging by gp41 and subsequent fusion of membranes for transfer of viral genetic material. Further, the virus phenotype determines the cell tropism via respective co- receptor binding. Thus, coreceptor binding motif of envelope is considered to be a potent anti-viral drug target for viral entry inhibition. However, its high variability in sequence is the major hurdle for developing inhibitors targeting the region. In this study, we have used an in silico Virtual Screening and "Fragment-based" method to design small molecules based on the gp120 V3 loop interactions with a potent broadly neutralizing human monoclonal antibody, 447-52D. From the in silico analysis a potent scaffold, 1,3,5-triazine was identified for further development. Derivatives of 1,3,5-triazine with specific functional groups were designed and synthesized keeping the interaction with co-receptor intact. Finally, preliminary evaluation of molecules for HIV-1 inhibition on two different virus strains (clade C, clade B) yielded IC50 5.0 μM. The approach used to design molecules based on broadly neutralizing antibody, was useful for development of target specific potent antiviral agents to prevent HIV entry. The study reported promising inhibitors that could be further developed and studied.
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- 2021
8. Et 3 N‐Prompted Efficient Synthesis of Anthracenyl Pyrazolines and Their Cytotoxicity Evaluation against Cancer Cell Lines
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Thechano Merry, Chullikkattil P. Pradeep, Kiran Devaraya, Prabhakar Maddela, and Anand K. Kondapi
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Chemistry ,Organic Chemistry ,Cancer research ,Cancer cell lines ,Cytotoxicity - Published
- 2019
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9. Clinical and whole genome characterization of SARS-CoV-2 in India
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Steven E. Bosinger, Amit A. Upadhyay, Thrilok Chander Bingi, Anand K. Kondapi, Sunitha Pakalapati, Radhakrishna Muttineni, Kalyani Putty, Shekar K, Saritha S, Rama Rao Amara, Nagamani Kammili, Ravi Kumar Puli, Pankaj Singh Dholaniya, Raja Rao M, and Mallikarjuna Reddy Doodipala
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0301 basic medicine ,RNA viruses ,Male ,Viral Diseases ,Coronaviruses ,Neutrophils ,Lymphocyte ,Disease ,Genome ,Geographical Locations ,White Blood Cells ,0302 clinical medicine ,Medical Conditions ,Animal Cells ,Chronic Kidney Disease ,030212 general & internal medicine ,Lymphocytes ,Pathology and laboratory medicine ,Phylogeny ,Data Management ,Kidney ,Multidisciplinary ,Transmission (medicine) ,Phylogenetic Analysis ,Genomics ,Medical microbiology ,Middle Aged ,Phylogenetics ,medicine.anatomical_structure ,Infectious Diseases ,Nephrology ,Viruses ,Spike Glycoprotein, Coronavirus ,RNA, Viral ,Medicine ,Female ,Angiotensin-Converting Enzyme 2 ,SARS CoV 2 ,Pathogens ,Cellular Types ,Research Article ,Adult ,Computer and Information Sciences ,Asia ,SARS coronavirus ,Immune Cells ,Science ,Immunology ,India ,Genome, Viral ,Microbiology ,Virus ,03 medical and health sciences ,Immune system ,Diabetes mellitus ,medicine ,Genetics ,Renal Diseases ,Humans ,Evolutionary Systematics ,Taxonomy ,Aged ,Medicine and health sciences ,Evolutionary Biology ,Blood Cells ,Biology and life sciences ,Whole Genome Sequencing ,business.industry ,SARS-CoV-2 ,Organisms ,Viral pathogens ,COVID-19 ,Covid 19 ,Cell Biology ,medicine.disease ,Microbial pathogens ,030104 developmental biology ,People and Places ,business - Abstract
We report clinical profile of hundred and nine patients with SARS CoV-2 infection, and whole genome sequences (WGS) of seven virus isolates from the first reported cases in India, with various international travel histories. Comorbidities such as diabetes, hypertension, and cardiovascular disease were frequently associated with severity of the disease. WBC and neutrophil counts showed an increase, while lymphocyte counts decreased in patients with severe infection suggesting a possible neutrophil mediated organ damage, while immune activity may be diminished with decrease in lymphocytes leading to disease severity. Increase in SGOT, SGPT and blood urea suggests the functional deficiencies of liver, heart, and kidney in patients who succumbed to the disease when compared to the group of recovered patients. The WGS analysis showed that these isolates were classified into two clades: I/A3i, and A2a (four according to GISAID: O, L, GR, and GH). Further, WGS phylogeny and travel history together indicate possible transmission from Middle East and Europe. Three S protein variants: Wuhan reference, D614G, and Y28H were identified predicted to possess different binding affinities to host ACE2.
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- 2021
10. Microfluidic Protein Imaging Platform: Study of Tau Protein Aggregation and Alzheimer's Drug Response
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Lopamudra Das, Anand K. Kondapi, Sarita Swain, Harikrishnan Narayanan Unni, Shubha Jain, Lopamudra Giri, and Sarpras Swain
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Tau protein ,Microfluidics ,microfluidics ,Bioengineering ,Immunofluorescence ,lcsh:Technology ,tau protein ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Confocal imaging ,mental disorders ,medicine ,Drug response ,lcsh:QH301-705.5 ,030304 developmental biology ,0303 health sciences ,biology ,medicine.diagnostic_test ,lcsh:T ,Communication ,lcsh:Biology (General) ,chemistry ,biology.protein ,Biophysics ,Adenosine triphosphate ,Alzheimer’s disease ,030217 neurology & neurosurgery - Abstract
Tau protein aggregation is identified as one of the key phenomena associated with the onset and progression of Alzheimer’s disease. In the present study, we performed on-chip confocal imaging of tau protein aggregation and tau–drug interactions using a spiral-shaped passive micromixing platform. Numerical simulations and experiments were performed in order to validate the performance of the micromixer design. We performed molecular modeling of adenosine triphosphate (ATP)-induced tau aggregation in order to successfully validate the concept of helical tau filament formation. Tau aggregation and native tau restoration were realized using an immunofluorescence antibody assay. The dose–response behavior of an Alzheimer’s drug, methylthioninium chloride (MTC), was monitored on-chip for defining the optimum concentration of the drug. The proposed device was tested for reliability and repeatability of on-chip tau imaging. The amount of the tau protein sample used in our experiments was significantly less than the usage for conventional techniques, and the whole protein–drug assay was realized in less than two hours. We identified that intensity-based tau imaging could be used to study Alzheimer’s drug response. In addition, it was demonstrated that cell-free, microfluidic tau protein assays could be used as potential on-chip drug evaluation tools for Alzheimer’s disease.
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- 2020
11. Targeting cancer with lactoferrin nanoparticles: recent advances
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Anand K Kondapi
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media_common.quotation_subject ,Iron ,Cell ,Biomedical Engineering ,Medicine (miscellaneous) ,Nanoparticle ,Bioengineering ,02 engineering and technology ,Development ,03 medical and health sciences ,Immune system ,Drug Delivery Systems ,Neoplasms ,medicine ,Humans ,General Materials Science ,Receptor ,Internalization ,030304 developmental biology ,media_common ,0303 health sciences ,biology ,Lactoferrin ,Chemistry ,food and beverages ,Cancer ,021001 nanoscience & nanotechnology ,medicine.disease ,Cell biology ,medicine.anatomical_structure ,Drug delivery ,biology.protein ,Nanoparticles ,0210 nano-technology - Abstract
Lactoferrin, an iron storage protein, is known for its microbicidal activity and its ability to modulate the immune system, mediated through specific interactions with receptors on cell surfaces for internalization. These activities confer a significant versatility to lactoferrin, presenting it as a targeting ligand to disease-bearing cells. Early efforts in developing targeted delivery systems have focused on nano- and microcomposites comprised of metal and polymeric materials. These can be targeted through conjugation or adsorption of lactoferrin to achieve recognition to receptor-expressing cells. More recently, efforts are underway to utilize lactoferrin itself as a medium in loading the therapeutic agent. The functional efficiency of drug-loaded lactoferrin nanoparticles has been evaluated in different disease conditions such as cancer, HIV, Parkinson’s disease, etc. This review will present the details of composition and performance of various delivery systems designed and developed using lactoferrin as targeting agent for the treatment of cancer.
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- 2020
12. Rv0474 is a copper‐responsive transcriptional regulator that negatively regulates expression of <scp>RNA</scp> polymerase β subunit in Mycobacterium tuberculosis
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Ranjit Ramachandran, Ramakrishnan Ajay Kumar, Roshna Lawrence Gomez, Anand K. Kondapi, Sajith Raghunandanan, Sivasankar Devanarayanan, Raghavan Varadarajan, and Akhila Bommakanti
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0301 basic medicine ,Leucine zipper ,Transcription, Genetic ,THP-1 Cells ,Sequence Homology ,Biochemistry ,Mycobacterium tuberculosis ,03 medical and health sciences ,chemistry.chemical_compound ,Bacterial Proteins ,RNA polymerase ,Transcriptional regulation ,Humans ,Amino Acid Sequence ,Promoter Regions, Genetic ,Molecular Biology ,Psychological repression ,biology ,Chemistry ,Promoter ,DNA-Directed RNA Polymerases ,Gene Expression Regulation, Bacterial ,Cell Biology ,biology.organism_classification ,rpoB ,Molecular biology ,030104 developmental biology ,Copper ,Bacteria ,Transcription Factors - Abstract
We characterize Rv0474, a putative transcriptional regulatory protein of Mycobacterium tuberculosis, which is found to function as a copper-responsive transcriptional regulator at toxic levels of copper. It is an autorepressor, but at elevated levels (10-250 μm) of copper ions the repression is relieved resulting in an increase in Rv0474 expression. Copper-bound Rv0474 is recruited to the rpoB promoter leading to its repression resulting in the growth arrest of the bacterium. Mutational analysis showed that the helix-turn-helix and leucine zipper domains of Rv0474 are essential for its binding to Rv0474 and rpoB promoters, respectively. The mechanism of Rv0474-mediated rpoB regulation seems to be operational only in pathogenic mycobacteria that can persist inside the host.
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- 2018
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13. Receptor-mediated targeted delivery of DNA using Lactoferrin nanoparticles
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Anand K. Kondapi and Sonali Kumari
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0301 basic medicine ,Cell Survival ,media_common.quotation_subject ,Receptors, Cell Surface ,Context (language use) ,02 engineering and technology ,Gene delivery ,Transfection ,Endocytosis ,Biochemistry ,Cell Line ,03 medical and health sciences ,Structural Biology ,Humans ,Particle Size ,Receptor ,Internalization ,Molecular Biology ,media_common ,biology ,Chemistry ,Lactoferrin ,Gene Transfer Techniques ,DNA ,General Medicine ,Receptor-mediated endocytosis ,021001 nanoscience & nanotechnology ,Cell biology ,030104 developmental biology ,biology.protein ,Nanoparticles ,0210 nano-technology ,Plasmids - Abstract
Efficient gene delivery facilitated by non-viral vectors, is comparatively safer alternative than viral carriers. Current approaches to gene delivery largely depends on methods that overcome cellular and tissue barriers impeding efficient DNA delivery. While the conventional delivery systems have the drawback of low cellular uptake and off target effects, the receptor-mediated gene delivery system has shown remarkable breakthrough. In that context exploiting the specific receptor targeting properties of lactoferrin protein, we have developed pDNA loaded lactoferrin protein nanoparticles (pDNA-LfNPs). pDNA-LfNPs were spherical in shape within the size range of 140±20nm. They were found to be resistant against nuclease digestion and stable under long storage. Additionally, LfNPs were biocompatible and have targeting ability to facilitate gene uptake by receptor mediated internalization in lactoferrin receptor expressing cell lines. It is also evident from our studies that Lf nanoparticles did not exhibit any cytotoxicity even at the highest concentration. Here we first time report the use of lactoferrin nanoparticles as a gene delivery carrier with targeting abilities.
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- 2018
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14. Design, Synthesis, and Antiviral activity of 1,2,3,4-Tetrahydropyrimidine derivatives acting as novel entry inhibitors to target at 'Phe43 cavity' of HIV-1 gp120
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Veena Kusuma, Akhila Bommakanti, Srinivas Vangara, Anand K. Kondapi, and Jagadeesh Senapathi
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Pyrimidine ,Anti-HIV Agents ,Stereochemistry ,viruses ,Clinical Biochemistry ,Human immunodeficiency virus (HIV) ,Pharmaceutical Science ,Microbial Sensitivity Tests ,Pyrimidinones ,HIV Envelope Protein gp120 ,medicine.disease_cause ,Biochemistry ,Virus ,Neutralization ,Structure-Activity Relationship ,chemistry.chemical_compound ,HIV Fusion Inhibitors ,Drug Discovery ,medicine ,Humans ,Molecule ,Molecular Biology ,Tetrahydropyrimidine derivatives ,Dose-Response Relationship, Drug ,Molecular Structure ,Organic Chemistry ,virus diseases ,Small molecule ,Design synthesis ,chemistry ,Drug Design ,HIV-1 ,Molecular Medicine - Abstract
The HIV-1 invasion is initiated with the interaction of viral glycoprotein gp120 and cellular receptor CD4. The binding mechanism reveals two major hotspots involved in gp120-CD4 interaction. The first one is a hydrophobic cavity (Phe43 cavity) on gp120 capped with phenyl ring of phe43CD4 and the second is the electrostatic interaction between positive charge of Arg59CD4 and negative charge of Asp368gp120. Targeting these hotspots, small molecules for entry inhibition and HIV-1 neutralization were designed and tested. In the process, pyrimidine derivatives were identified as potent molecules to intercept gp120-CD4 binding by targeting both the hotspots. Herein, the synthesis, characterization of 1,2,3,4-Tetrahydropyrimidine derivatives, and biological evaluation on 93IN101, a clade C virus are presented. The paper presents a novel set of entry inhibitors to target dual hotspots on gp120 to inhibit protein-protein interactions.
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- 2021
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15. Carboplatin- and Etoposide-Loaded Lactoferrin Protein Nanoparticles for Targeting Cancer Stem Cells in Retinoblastoma In Vitro
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Jodi Alexander, Radhika Manukonda, Anand K. Kondapi, Revu V. L. Narayana, Geeta K. Vemuganti, Helen Kalirai, Varsha Prabhu, Neha Tomar, Swathi Kaliki, Pritikana Jana, Rohini M. Nair, and Sarah E. Coupland
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Retinal Neoplasms ,Population ,Biological Availability ,Antineoplastic Agents ,Pharmacology ,Carboplatin ,chemistry.chemical_compound ,Drug Delivery Systems ,Microscopy, Electron, Transmission ,Cancer stem cell ,Spectroscopy, Fourier Transform Infrared ,medicine ,Humans ,MTT assay ,Cytotoxicity ,education ,IC50 ,Chromatography, High Pressure Liquid ,Etoposide ,Drug Carriers ,education.field_of_study ,Microscopy, Confocal ,biology ,Lactoferrin ,Chemistry ,Retinoblastoma ,Flow Cytometry ,Antineoplastic Agents, Phytogenic ,Culture Media ,Neoplastic Stem Cells ,biology.protein ,Nanoparticles ,medicine.drug - Abstract
Purpose Cancer stem cells (CSCs) are known to contribute to tumor relapses by virtue of their chemoresistance. With the knowledge that nanoformulations can overcome drug resistance, we evaluated the efficacy and cytotoxicity of clinical-grade carboplatin (CPT)- and etoposide (ETP)-loaded lactoferrin nanoparticles (Lf-Nps) on total, CD133-enriched (non-CSC), and CD133-depleted (CSC) populations of retinoblastoma (Rb) Y79 cells. Methods Physicochemical properties of drug-loaded Lf-Nps were measured with transmission electron microscopy and attenuated total reflectance-Fourier transform infrared. The encapsulation efficiency, uptake, and release of drug-loaded Lf-Nps were measured using high-performance liquid chromatography and a UV-visible spectrophotometer. Cytotoxicity of the standard and drug-loaded Lf-Nps was evaluated by the MTT assay. Results The mean (SD) size and encapsulation efficiency of Lf-CPT and Lf-ETP were 61.2 (3.94) nm, 60% and 45.15 (5.85) nm, 38%, respectively, and the drug release efficiency was highest at pH 6. The increased drug uptake and lower release of drug-loaded Lf-Nps were observed in CSC and non-CSC populations compared to their standard forms. The relative increase of drug uptake and sustained intracellular retention of the drug-loaded Lf-Nps compared to standard drugs showed an enhanced cytotoxicity up to 50%, especially in Rb Y79 CSCs (IC50: CPT, 230.3; Lf-CPT, 118.2; ETP, 198.1; and Lf-ETP, 129) compared to non-CSCs. Conclusions Our study documents an increase in drug uptake, retention, and cytotoxicity of Lf-CPT and Lf-ETP on Y79 CSCs and non-CSCs as compared to their standard drugs in vitro. The reversal of chemoresistance in the CSC population by nanoformulation appears promising with the potential to pave the way for improved targeted therapy and better clinical outcomes.
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- 2021
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16. Topoisomerase IIβ and its role in different biological contexts
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Anand K. Kondapi, Pankaj Singh Dholaniya, and V. Satish Bollimpelli
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Models, Molecular ,0301 basic medicine ,Aging ,DNA Repair ,Transcription, Genetic ,DNA repair ,Neurogenesis ,Biophysics ,HIV Infections ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Movement ,Transcription (biology) ,Neoplasms ,Transcriptional regulation ,Animals ,Humans ,Molecular Biology ,Mitosis ,Neurons ,biology ,Cell growth ,Topoisomerase ,Cell Cycle ,Cell Differentiation ,DNA ,Molecular biology ,In vitro ,Protein Structure, Tertiary ,Cell biology ,DNA-Binding Proteins ,DNA Topoisomerases, Type II ,030104 developmental biology ,chemistry ,biology.protein - Abstract
Topoisomerase IIβ is a type II DNA topoisomerase that was reported to be expressed in all mammalian cells but abundantly expressed in cells that have undergone terminal differentiation to attain a post mitotic state. Enzymatically it catalyzes ATP-dependent topological changes of double stranded DNA, while as a protein it was reported to be associated with several factors in promoting cell growth, migration, DNA repair and transcription regulation. The cellular roles of topoisomerase IIβ are very less understood compared to its counterpart topoisomerase IIα. This review discusses origin of Topoisomerase II beta, its structure, activities reported in vitro and in vivo along with implications in cellular processes namely transcription, DNA repair, neuronal development, aging, HIV-infection and cancer.
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- 2017
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17. Lactoferrin nanoparticle mediated targeted delivery of 5-fluorouracil for enhanced therapeutic efficacy
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Sonali Kumari and Anand K. Kondapi
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0301 basic medicine ,media_common.quotation_subject ,Melanoma, Experimental ,Antineoplastic Agents ,Apoptosis ,02 engineering and technology ,Pharmacology ,Biochemistry ,Mice ,03 medical and health sciences ,Drug Stability ,Structural Biology ,In vivo ,Materials Testing ,medicine ,Animals ,Particle Size ,Internalization ,Cytotoxicity ,Molecular Biology ,Cell Proliferation ,media_common ,Drug Carriers ,biology ,Lactoferrin ,Chemistry ,Melanoma ,General Medicine ,021001 nanoscience & nanotechnology ,medicine.disease ,Endocytosis ,Drug Liberation ,030104 developmental biology ,Targeted drug delivery ,Fluorouracil ,biology.protein ,Nanoparticles ,Skin cancer ,Lysosomes ,0210 nano-technology ,medicine.drug - Abstract
Malignant melanoma is an aggressive form of skin cancer with high mortality rates. Common treatments for malignant melanoma involve a combination of radiotherapy and chemotherapy with fluorouracil (5-FU). A major challenge with melanoma treatment is active resistance to chemotherapeutic drugs. Superior treatment outcome lies on balance involving optimum therapeutic doses and the side effects associated with dose escalation. The study aimed to efficiently entrap 5-FU in lactoferrin nanoparticles (LfNPs) in an attempt to enhance its therapeutic efficacy. 5-FU loaded lactoferrin nanoparticles (5-FU-LfNPs) were prepared by sol-oil method with a narrow size distribution of 150±20nm 5-FU-LfNPs exhibits high encapsulation efficiency (64±2.3%) and increased storage stability at 4°C. Competitive ligand binding and lysosomal colocalization studies suggested a receptor mediated uptake for LfNPs internalization in B16F10 cells. Moreover, 5-FU-LfNPs show a pH dependent drug release similar to endosomal pH (pH 5 and 6). In addition compared to free 5-FU, 5-FU- LfNPs showed a higher intracellular uptake, prolonged retention and improved cytotoxicity (2.7-fold) in melanoma cells (B16F10). To conclude, LfNPs represent a superior nano-carrier for the targeted delivery of 5-FU in melanoma cells intended for the efficient treatment of melanoma though detailed in vivo investigations are warranted.
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- 2017
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18. Discovery of dual cation-π inhibitors of acetylcholinesterase: design, synthesis and biological evaluation
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Naresh, Damuka, Kurumurthy, Kammari, Angamba Meetei, Potshangbam, Ravindranath Singh, Rathore, Anand K, Kondapi, and Vaibhav, Vindal
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Molecular Docking Simulation ,Neuroblastoma ,Structure-Activity Relationship ,Binding Sites ,Cell Survival ,Cations ,Cell Line, Tumor ,Drug Design ,Oxazines ,Acetylcholinesterase ,Humans ,Donepezil ,Cholinesterase Inhibitors - Abstract
Alzheimer's disease (AD) is a widespread dementia-related disease affecting mankind worldwide. A cholinergic hypothesis is considered the most effective target for treating mild to moderate AD. Present study aims to identify new scaffolds for inhibiting acetylcholinesterase activity.To find Acetylcholinesterase (AChE) inhibitors, we computationally designed and chemically synthesized a series of cation-π inhibitors based on novel scaffolds that potentially block AChE. The cytotoxic effect of inhibitors were determined by MTT. AChE inhibition experiment was performed by Ellman and the Amplex red method in the SH-SY5Y cell line. Further, the experimental data on designed compounds corroborate with various computational studies that further elucidate the binding mode of interactions and binding affinity.The inhibitors were designed to promote dual binding and were incorporated with groups that may facilitate any of the cation- π, hydrophobic and hydrogen-bonding interactions with the conserved and hot-spot residues in the binding site. The inhibitors possessing pyridine-N-methylated pyridinium group and thereby involved in cation- π interactions are highly active relative to the marketed drug Donepezil as well as the designed analogs that lack the group. In vitro enzymatic Ellman assay and Amplex red assay on SH-SY5Y cell line estimated ICCompounds possessing methylidenecyclohexanone scaffolds, with characteristic dual-binding and involving strong cation-π interactions, serves as new leads for AChE and opens a new direction for drug discovery efforts.
- Published
- 2019
19. TopoisomeraseIIβ in HIV-1 transactivation
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Anil Kumar Chekuri, Anand K. Kondapi, V. Satish Bollimpelli, and C. Bhaskar
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Transcriptional Activation ,0301 basic medicine ,viruses ,Poly (ADP-Ribose) Polymerase-1 ,Biophysics ,Biology ,Virus Replication ,Biochemistry ,DNA-binding protein ,03 medical and health sciences ,Transactivation ,Transcription (biology) ,Cell Line, Tumor ,Coactivator ,Humans ,Ku Autoantigen ,Molecular Biology ,HIV Long Terminal Repeat ,Antigens, Nuclear ,Transfection ,Molecular biology ,Long terminal repeat ,DNA-Binding Proteins ,DNA Topoisomerases, Type II ,HEK293 Cells ,030104 developmental biology ,Viral replication ,HIV-1 ,tat Gene Products, Human Immunodeficiency Virus ,Poly(ADP-ribose) Polymerases - Abstract
TopoisomeraseIIβ, an isoform of type II topoisomerase, was found to be functional in various viral infections. Its plausible role in HIV life cycle was also suggested earlier, but not clearly established. In the present study, we have investigated the role of TopoIIβ in HIV-1 infection by its gain and loss of function. Overexpression of TopoIIβ lead to an increase in viral replication, resulting in enhanced virion production. HIV-1 replication was impaired when TopoIIβ was down regulated by siRNA and inhibited by ICRF-193 and merbarone. The role of TopoIIβ in HIV-1 transcription was shown through its interaction with Tat and recruitement to long terminal repeat (LTR) region by co-immunoprecipitation and ChIP assays. Involvement of TopoIIβ in transactivation of HIV-1 LTR was confirmed by luciferase assay in reporter cell line, TZM bl and also by transfection of reporter exogenously. It was also observed that LTR transactivation commensurated with the expression of TopoIIβ in the presence of Tat. In addition, a decreased viral gene expression on treatment with merbarone exemplifies the importance of catalytic activity of TopoIIβ in viral replication. These observations indicate that TopoIIβ is involved in the cascade of coactivator complexes that are recruited to LTR for regulation of HIV-1 transcription.
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- 2016
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20. Sulfonate modified Lactoferrin nanoparticles as drug carriers with dual activity against HIV-1
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Akhila Bommakanti, Anand K. Kondapi, Satyajit Mukhopadhyay, Jagadeesh Senapathi, and Suresh Mallepalli
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Scanning electron microscope ,Nanoparticle ,HIV Infections ,HIV Envelope Protein gp160 ,Colloid and Surface Chemistry ,Anti-Infective Agents ,Dynamic light scattering ,Humans ,Physical and Theoretical Chemistry ,Cells, Cultured ,Host cell surface ,Drug Carriers ,biology ,Chemistry ,Lactoferrin ,Surfaces and Interfaces ,General Medicine ,Drug delivery ,HIV-1 ,Biophysics ,biology.protein ,Nanoparticles ,Surface modification ,Sulfonic Acids ,Drug carrier ,Biotechnology - Abstract
Intriguing properties and structural dynamics of Lactoferrin have been exploited in numerous applications, including its use as self-assembling, pH sensitive nanoparticles to deliver intended cargo at the disease site. In this study, we explore the possibility of surface modification of Lactoferrin nanoparticles to hone its specificity to target HIV-1 infected cells. Existence of free cysteine groups on Lactoferrin nanoparticles available for reaction with external molecules facilitates conjugation on the surface with Sodium 2-mercaptoethanesulfonate (MES). Conjugation with MES is used to edge a negative charge that can mimic CCR5 and Heparan sulfate (initial point of contact of HIV-1 env to host cell surface) electrostatic charge (Sulfate group). A simple sono-chemical irradiation method was employed for self-assembly of Nanoparticles and for surface modification. The nanoparticles serve dual purpose to abrogate extracellular entry and to target viral enzymes, when loaded with ART drugs. The morphology and size distribution of the formed particles were explored using Transmission Electron Microscope (TEM), Scanning Electron Microscope (SEM) and Dynamic Light Scattering. Raman SERS was employed to understand the difference in the protein upon surface modification. The anti-HIV property of the particles was confirmed in-vitro. The modified device demonstrated acceptable nanoparticle properties with controlled release and higher effective concentration in the area of infection.
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- 2020
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21. Aurora kinase B siRNA-loaded lactoferrin nanoparticles potentiate the efficacy of temozolomide in treating glioblastoma
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Nandini Rangaraj, Dwaipayan Bhattacharya, Sumana Chakarvarty, Nalam Madhusudhana Rao, Sonali Kumari, and Anand K. Kondapi
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0301 basic medicine ,Cell cycle checkpoint ,Cell Survival ,medicine.medical_treatment ,Biomedical Engineering ,Medicine (miscellaneous) ,Bioengineering ,Apoptosis ,Development ,Blood–brain barrier ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Cell Line, Tumor ,medicine ,Temozolomide ,Gene silencing ,Animals ,Aurora Kinase B ,Humans ,General Materials Science ,RNA, Small Interfering ,Cytotoxicity ,Cell Proliferation ,Chemotherapy ,biology ,Chemistry ,Lactoferrin ,Xenograft Model Antitumor Assays ,Dacarbazine ,030104 developmental biology ,medicine.anatomical_structure ,Blood-Brain Barrier ,030220 oncology & carcinogenesis ,biology.protein ,Cancer research ,Glioblastoma ,medicine.drug - Abstract
Aim: To investigate the efficacy of lactoferrin nanoparticles (LfNPs) in delivering siRNA across the blood–brain barrier to treat glioblastoma multiforme (GBM) and with an additional objective of potentiation of conventional temozolomide (TMZ) chemotherapy. Methods: Aurora kinase B (AKB) siRNA-loaded nanoparticles (AKB–LfNPs) were prepared with milk protein, lactoferrin, by water in oil emulsion method. AKB–LfNPs were tested in cell lines and in GBM orthotopic mouse model with and without TMZ treatment. Results: AKB silencing, cytotoxicity and cell cycle arrest by these LfNPs were shown to be effective on GL261 cells. Tumor growth was significantly lower in AKB–LfNPs alone and in combination with TMZ treated mice and increased the survival by 2.5-times. Conclusion: Treatment of AKB–LfNPs to GBM mice improves life expectancy and has potential to combine with conventional chemotherapy.
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- 2018
22. Evaluation of the reproductive toxicity of antiretroviral drug loaded lactoferrin nanoparticles
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Anand K. Kondapi, Anandha Rao Ravula, Suresh Yenugu, and Lavanya Madugulla
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0301 basic medicine ,Drug ,Cyclopropanes ,Curcumin ,Urology ,media_common.quotation_subject ,Drug Evaluation, Preclinical ,Antiretroviral drug ,Pharmacology ,03 medical and health sciences ,0302 clinical medicine ,Acquired immunodeficiency syndrome (AIDS) ,Oral administration ,Pregnancy ,medicine ,Animals ,media_common ,030219 obstetrics & reproductive medicine ,biology ,Lactoferrin ,business.industry ,Sexually Transmitted Diseases, Viral ,medicine.disease ,Bioavailability ,Benzoxazines ,Rats ,Administration, Intravaginal ,030104 developmental biology ,Reproductive Medicine ,Anti-Retroviral Agents ,Alkynes ,Drug delivery ,biology.protein ,Nanoparticles ,Female ,Reproductive toxicity ,business - Abstract
Multiple prevention therapy has gained importance for the prevention and treatment of sexually transmitted diseases, especially HIV/AIDS. Antiretroviral drugs encapsulated in nanoparticles have been developed for efficient delivery of the drugs to the vaginal surface. Lactoferrin nanoparticles (LFNPs) encapsulating anticancer or antiretroviral drugs are found to be promising agents to specifically deliver drugs at the target sites. Recent studies indicate that the bioavailability is higher for antiretroviral drugs delivered by LFNPs than when the drugs are administered alone. Although LFNP-mediated drug delivery via the oral or vaginal route for the treatment of HIV/AIDS is promising, the effect of such administrations is not well studied. Drug-loaded LFNPs when administered to rats by the vaginal route did not show any effect on the reproductive performance, fertility, and postnatal development. Oral administration of drug-loaded LFNPs caused a significant decrease in litter size, whereas the reproductive performance and postnatal development remained normal. In our model system, the results indicate that vaginal administration of drug-loaded LFNPs appears safer and can be projected for the delivery of antiretroviral agents via the vaginal route. Abbreviations: LFNPs: lactoferrin nanoparticles; STIs: sexually transmitted diseases infections; NPs: nanoparticles; LF: lactoferrin; DL-LFNPs: drug loaded lactoferrin nanoparticles; MPT: multiple prevention techniques.
- Published
- 2018
23. Montmorillonite K10 catalyzed multi component reactions (MCR): synthesis of novel thiazolidinones as anticancer agents
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Karri Someswara Reddy, Anand K. Kondapi, Mallidi Veeraghava Reddy, C. Bhaskar, Ganapavarapu Veera Raghava Sharma, and Bandaru Devi
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chemistry.chemical_compound ,Montmorillonite ,chemistry ,Component (thermodynamics) ,Organic Chemistry ,Organic chemistry ,Catalysis - Abstract
Montmorillonite K10 is a suitable catalyst in a multicomponent reaction involving an aldehyde, an amine, and thioglycolic acid in N,N-dimethylformamide as solvent at moderate (50°C) to reasonably high (120°C) temperatures to form thiazolidinones. The reaction involves easy workup and purification. Several thiazolidinones were prepared. In particular, campholenic aldehyde obtained from α-pinene was used to synthesize potentially bioactive thiazolidinones. All products were characterized by IR, 1H NMR, and mass spectra. Preliminary anticancer screening tests revealed that two compounds show anticancer activity and can be taken up for further screening.
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- 2015
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24. Evaluation of Antiproliferative Activity, Safety and Biodistribution of Oxaliplatin and 5-Fluorouracil Loaded Lactoferrin Nanoparticles for the Management of Colon Adenocarcinoma: an In Vitro and an In Vivo Study
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Sonali Kumari, Anand K. Kondapi, and Farhan Ahmed
- Subjects
Biodistribution ,medicine.medical_treatment ,Pharmaceutical Science ,Antineoplastic Agents ,02 engineering and technology ,Pharmacology ,Adenocarcinoma ,03 medical and health sciences ,0302 clinical medicine ,Therapeutic index ,Pharmacokinetics ,In vivo ,Cell Line, Tumor ,medicine ,Animals ,Humans ,Pharmacology (medical) ,Tissue Distribution ,Rats, Wistar ,Cell Proliferation ,Chemotherapy ,Drug Carriers ,biology ,business.industry ,Lactoferrin ,Organic Chemistry ,021001 nanoscience & nanotechnology ,digestive system diseases ,Oxaliplatin ,030220 oncology & carcinogenesis ,Drug delivery ,Colonic Neoplasms ,biology.protein ,Molecular Medicine ,Nanoparticles ,Fluorouracil ,0210 nano-technology ,business ,Biotechnology ,medicine.drug - Abstract
Colon adenocarcinoma is the most common form of gastro intestinal tract cancer, predominantly in ageing population. Chemotherapy with 5-Fluorouracil and oxaliplatin is an indispensable treatment regimen, nevertheless having limitation of systemic toxicity and lower therapeutic index. The present study is based on evaluation of anti-proliferative potential, pharmacokinetics parameters, safety profile, biodistribution and efficacy of 5-FU/oxaliplatin loaded lactoferrin nanoparticles in cell lines and wistar rats in order to overcome the above limitation. Nanoparticles were prepared by Water-in-oil process. The anti-proliferative efficacy and mode of cellular entry was evaluated in COLO-205 cells. The pharmacokinetics and biodistribution analysis were performed in healthy rats while efficacy and safety assay were performed in ACF induced rats. 5-FU and oxaliplatin loaded nanoparticles shows enhanced antiproliferative activity as compare to free drugs in COLO-205 cells. Lactoferrin nanoparticles also improve the pharmacokinetics profile, safety parameters and efficacy of 5-FU and Oxaliplatin. Lactoferrin nanoparticles demonstrated an attractive drug delivery module to manage the colon adenocarcinoma as it has improved the antiproliferative activity of 5-FU and Oxaliplatin against colon adenocarcinoma cells. Moreover, it also improves the pharmacokinetic profile and safety parameters of the same drug in wistar rat.
- Published
- 2017
25. Status of topoisomerase-2β protein in all-trans retinoic acid-treated human neuroblastoma (SK-N-SH) cells
- Author
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Venkanna Bhanothu and Anand K. Kondapi
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0301 basic medicine ,Neurite ,Neuronal Outgrowth ,Retinoic acid ,Tretinoin ,Biochemistry ,Isozyme ,03 medical and health sciences ,chemistry.chemical_compound ,Neuroblastoma ,0302 clinical medicine ,Western blot ,Cell Line, Tumor ,medicine ,Humans ,Epigenetics ,Poly-ADP-Ribose Binding Proteins ,neoplasms ,Molecular Biology ,Gene ,Cell Proliferation ,biology ,medicine.diagnostic_test ,Chemistry ,Topoisomerase ,Cell Differentiation ,Cell Biology ,medicine.disease ,Cell biology ,030104 developmental biology ,DNA Topoisomerases, Type II ,030220 oncology & carcinogenesis ,biology.protein - Abstract
Of the mammalian topoisomerase (Topo)-2 isozymes (α and β), Topo-2β protein has been reported to regulate neuronal development and differentiation. However, the status of Topo-2β in all-trans retinoic acid (ATRA)-treated human neuroblastoma (SK-N-SH) cells is not understood. More information about the effects of ATRA on SK-N-SH cells is needed to reveal the role of ATRA in the regulation of Topo-2β levels and spontaneous regression of SK-N-SH cells to predict the clinical activity. This study was proposed to investigate the status and role of Topo-2β protein in ATRA-induced survival and neuronal differentiation of SK-N-SH cells. Microscopic, sodium dodecyl sulfate polyacrylamide gel electrophoresis after immunoprecipitations and Western blot analysis were used to study and compare Topo-2β protein among 10 µM ATRA-treated SK-N-SH cells and controls at different time points. The level of Topo-2β protein increased in the initial days of treatment but markedly decreased upon induction of differentiation by ATRA in later stages. Upon ATRA treatment, SK-N-SH cells stretched, exhibited neurite extensions, and acquired a neuronal phenotype. Both treated and untreated SK-N-SH cells were able to migrate, occupy the scratched area, and completely recolonized 24 hours later. These results suggest an indirect role of Topo-2β protein in regulation of genes involved in cell migration and differentiation of ATRA-treated SK-N-SH cells. This study suggests that Topo-2β may be part of activation/repression of protein complexes activated by epigenetic modifying agents, differentiating signals, and inducible locus. However, detailed studies are needed to explore the ATRA-downstream genes leading to Topo-2β regulation and regulatory proteins of neuronal differentiation.
- Published
- 2017
26. Development of pyridine dicoumarols as potent anti HIV-1 leads, targeting HIV-1 associated topoisomeraseIIβ kinase
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Akhila Bommakanti, Kiran Devaraya, Anand K. Kondapi, and Kurumurthy Kammari
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Quantitative structure–activity relationship ,Dicumarol ,Anti-HIV Agents ,Cell Survival ,Pyridines ,HIV Core Protein p24 ,Quantitative Structure-Activity Relationship ,Enzyme-Linked Immunosorbent Assay ,010402 general chemistry ,01 natural sciences ,Cell Line ,chemistry.chemical_compound ,Drug Discovery ,Pyridine ,medicine ,Humans ,Topoisomerase II Inhibitors ,Cytotoxicity ,IC50 ,Pharmacology ,biology ,010405 organic chemistry ,Kinase ,Topoisomerase ,Dicoumarol ,0104 chemical sciences ,DNA-Binding Proteins ,DNA Topoisomerases, Type II ,Biochemistry ,chemistry ,4-Hydroxycoumarin ,Drug Design ,biology.protein ,HIV-1 ,Molecular Medicine ,medicine.drug - Abstract
Aim: A structural study of a series of pyridine dicoumarol derivatives with potential activity against a novel Topoisomerase IIβ kinase which was identified in the HIV-1 viral lysate, compounds were designed and synthesized based on a 3D-QSAR study. Materials & methods: Based on QSAR model we have designed and synthesized a series of pyridine dicoumarol derivatives and characterized by spectral studies, all the molecules are biologically evaluated by kinase assay, cytotoxicity assay, ELISA and PCR method. Result: We demonstrated the achievement of water soluble disodium pyridine dicoumarate derivatives showing high anti-HIV-1 activity (IC50
- Published
- 2017
27. Overcoming blood brain barrier with a dual purpose Temozolomide loaded Lactoferrin nanoparticles for combating glioma (SERP-17-12433)
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Saad M. Ahsan, Nalam Madhusudhana Rao, Anand K. Kondapi, Sonali Kumari, and Jerald Mahesh Kumar
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0301 basic medicine ,Science ,02 engineering and technology ,Blood–brain barrier ,Article ,03 medical and health sciences ,Mice ,Glioma ,Cell Line, Tumor ,medicine ,Temozolomide ,Animals ,Antineoplastic Agents, Alkylating ,Tumor microenvironment ,Drug Carriers ,Multidisciplinary ,biology ,Lactoferrin ,business.industry ,021001 nanoscience & nanotechnology ,medicine.disease ,In vitro ,030104 developmental biology ,medicine.anatomical_structure ,Treatment Outcome ,Transcytosis ,Blood-Brain Barrier ,Nanoparticles for drug delivery to the brain ,Immunology ,Cancer research ,biology.protein ,Medicine ,Nanoparticles ,0210 nano-technology ,business ,medicine.drug - Abstract
Targeted delivery of drugs to the brain is challenging due to the restricted permeability across the blood brain barrier (BBB). Gliomas are devastating cancers and their positive treatment outcome using Temozolomide (TMZ) is limited due to its short plasma half-life, systemic toxicity and limited access through the blood-brain barrier (BBB). Nanoparticles made of Lactoferrin (Lf) protein, have been shown to enhance the pharmacological properties of drugs. Here, we report the specific ability of Lf nanoparticles to cross BBB and target over-expressed Lf receptors on glioma for enhanced TMZ delivery. TMZ-loaded Lf nanoparticles (TMZ-LfNPs) were prepared by our previously reported sol-oil method. While the Lf protein in the NP matrix aids in transcytosis across the BBB and preferential tumor cell uptake, the pH responsiveness leads to TMZ release exclusively in the tumor microenvironment. Delivery through LfNPs results in an enhanced and sustained intracellular concentration of TMZ in GL261 cells in vitro along with improving its in vivo pharmacokinetics and brain accumulation. TMZ-LfNPs treatment results in a significant reduction of tumor volume, higher tumor cell apoptosis and improved median survival in glioma bearing mice. These results demonstrate that LfNPs present an efficient TMZ delivery platform for an effective treatment of gliomas.
- Published
- 2017
28. A Target-Specific Oral Formulation of Doxorubicin-Protein Nanoparticles: Efficacy and Safety in Hepatocellular Cancer
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Farhan Ahmed, C. Bhaskar, Anand K. Kondapi, and Kishore Golla
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apotransferrin nanoparticles ,biology ,business.industry ,Lactoferrin ,Hepatocellular carcinoma ,Cancer ,doxo ,Pharmacology ,medicine.disease ,Bioavailability ,Oncology ,lactoferrin nanoparticles ,Toxicity ,Cancer cell ,medicine ,biology.protein ,Doxorubicin ,business ,Liver cancer ,medicine.drug ,Research Paper ,Oral chemotherapy - Abstract
Background/Aims: Hepatocellular carcinoma (HCC) also known as malignant hepatoma is a most common liver cancer. Doxorubicin (Doxo) is an anti-cancer drug having activity against a wide spectrum of cancer types. Clinical Utility of doxo has been limited due to its poor bioavailability and toxicity to heart and spleen. Furthermore, cancer chemotherapeutics have limited oral absorption. Transferrin family proteins are highly abundant and plays important role in transport and storage of iron in cells and tissues. Since apotransferrin and lactoferrin receptors are highly expressed on the surface of metabolically active cancer cells, the principal objective of present study is to evaluate efficacy of doxorubicin loaded apotransferrin and lactoferrin nanoparticles (apodoxonano or lactodoxonano) in oral treatment of HCC in rats. Study Design: HCC was induced in rats by supplementing 100 mg/L of diethylnitrosamine (DENA) in drinking water for 8 weeks. A week after the last day of DENA administration, rats were divided into four groups, each group comprising of five animals. Each group was administered with one of the drug viz., saline, doxorubicin (doxo), apodoxonano and lactodoxonano (4 mg/ kg equivalent of drug). In each case, they received 8 doses of the drug orally with six day interval. One week after the last dose, anticancer activity was evaluated by counting the liver nodules, H & E analysis of tissue sections and expression levels of angiogenic and antitumor markers. Results: In rats treated with apodoxonano and lactodoxonano, the number of neoplastic nodules was significantly lower than that of rats administered with saline or with doxo. Apodoxonano and lactodoxonano did not exhibit decrease in mean body weight, which was markedly reduced by 22% in the case of doxo administered rats. In rats treated with nanoformulations, the number of liver nodules was found reduced by >93%. Both nanoformulations showed significantly high localization in liver compared to doxo. Conclusions: Apodoxonano and lactodoxonano showed improved efficacy, bioavailability and safety compared to doxo for treatment of HCC in rats when administered orally.
- Published
- 2013
29. Involvement of human topoisomerase II isoforms in HIV-1 reverse transcription
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S. Lokeswara Balakrishna, Anand K. Kondapi, and N. Satyanarayana
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Gene Expression Regulation, Viral ,Gene isoform ,Biophysics ,HIV Infections ,Proviral dna ,Virus Replication ,Immunofluorescence ,Biochemistry ,Peripheral blood mononuclear cell ,Gene Expression Regulation, Enzymologic ,Cell Line ,Transcription (biology) ,medicine ,Humans ,Protein Isoforms ,RNA, Small Interfering ,Molecular Biology ,Cells, Cultured ,biology ,medicine.diagnostic_test ,Topoisomerase ,Molecular biology ,HIV Reverse Transcriptase ,Reverse transcriptase ,DNA Topoisomerases, Type II ,Gene Knockdown Techniques ,Host-Pathogen Interactions ,HIV-1 ,Leukocytes, Mononuclear ,biology.protein ,TOPO cloning - Abstract
HIV-1 reverse transcription (RTn) involves synthesis of double strand DNA (dsDNA) from viral genomic RNA. Topoisomerase II (Topo II) alpha and beta maintains topological reorganization of dsDNA regions and catalytic inhibition of these isoforms repressed viral replicative cycle. Present study is aimed to understand the role of Topo II isoforms in HIV-1 early replication. Topo IIα and β showed differential expression in SupT1 cells and PBMCs during early hours of HIV-1 infection where Topo IIα expression increased after 4 h, while Topo IIβ showed relatively higher expression at 1 and 4 h. In Topo IIα and/or β down regulated cells, transcription of viral genes gag, pol and env as well as proviral DNA synthesis was abolished. In Topo IIα and/or β down regulated cells, strong stop DNA synthesis was unaffected while other downstream events of reverse transcription such as first strand transfer, full length minus strand synthesis, and second strand transfer were completely inhibited, which affects HIV-1 replication. Further, co-localization of Topo II isoforms with HIV-1 reverse transcriptase was observed in SupT1 cells and PBMCs by immunofluorescence. These results collectively suggest a role of Topo II isoforms during HIV-1 RTn probably by promoting the alignment of viral RNA–DNA hybrids.
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- 2013
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30. An oral formulation of efavirenz-loaded lactoferrin nanoparticles with improved biodistribution and pharmacokinetic profile
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Anand K. Kondapi, Yeruva Samrajya Lakshmi, and Prashant Kumar
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0301 basic medicine ,Cyclopropanes ,Male ,Biodistribution ,Efavirenz ,Cell Survival ,Cmax ,Administration, Oral ,02 engineering and technology ,Pharmacology ,Cell Line ,03 medical and health sciences ,chemistry.chemical_compound ,Pharmacokinetics ,Anti-Infective Agents ,Oral administration ,In vivo ,Medicine ,Animals ,Humans ,Pharmacology (medical) ,Rats, Wistar ,Drug Carriers ,business.industry ,Health Policy ,021001 nanoscience & nanotechnology ,Bioavailability ,Benzoxazines ,Lactoferrin ,030104 developmental biology ,Infectious Diseases ,chemistry ,Alkynes ,Toxicity ,Nanoparticles ,Female ,0210 nano-technology ,business - Abstract
Objectives Efavirenz (EFV), a non-nucleoside reverse transcriptase inhibitor, is a drug that is frequently included in highly active antiretroviral therapy for treatment of HIV infection. Decreased bioavailability and increased toxicity limit its use. We report a formulation of efavirenz-loaded lactoferrin nanoparticles (lacto-EFV-nano) for oral delivery which exhibited significantly improved pharmacological properties coupled with reduced toxicity compared with its free form. Methods Lacto-EFV-nano was prepared using the Sol-oil protocol and characterized using various sources of characterization. In vitro and in vivo studies were performed to test the stability, safety, efficacy, biodistribution and pharmacokinetics of lacto-EFV-nano. Results The nanoparticles prepared for the present study had an average size of 45−60 nm as revealed by field emission scanning electron microscope measurements. Further, dynamic light scattering data showed a hydrodynamic radius of 103 ± 5.3 nm, a zeta potential of −23 ± 1.2 mV and a polydispersity index of 2-fold enhanced anti-HIV-1 activity compared with free EFV (IC50 = 2.56 nM). Lacto-EFV-nano exhibited improved oral bioavailability and an improved in vivo pharmacokinetic profile, with a > 3−4-fold increase in the area under the plasma concentration−time curve (AUC), a 6−7-fold increase in the area under the first moment curve (AUMC), a > 30% increase in the peak plasma concentration of the drug after oral administration (Cmax) and a 2-fold increase in the time to reach Cmax (Tmax) and the time required for the concentration of the drug to reach half of its original value (t1/2). Furthermore, lacto-EFV-nano did not show any organ-related toxicity. A significant decrease in the concentrations of various parameters, elevated concentrations of which are markers of reduced safety, were also observed in rats treated with lacto-EFV-nano. Conclusions Compared with free EFV, lacto-EFV-nano is a promising oral nanoformulation with enhanced bioavailability and efficacy of EFV and improved safety.
- Published
- 2016
31. Triple Drug Combination of Zidovudine, Efavirenz and Lamivudine Loaded Lactoferrin Nanoparticles: an Effective Nano First-Line Regimen for HIV Therapy
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Yeruva Samrajya Lakshmi, Anand K. Kondapi, and Prashant Kumar
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0301 basic medicine ,Drug ,Cyclopropanes ,Male ,Biodistribution ,media_common.quotation_subject ,Cmax ,Pharmaceutical Science ,HIV Infections ,02 engineering and technology ,Pharmacology ,03 medical and health sciences ,Pharmacokinetics ,Cell Line, Tumor ,Animals ,Humans ,Pharmacology (medical) ,Tissue Distribution ,Rats, Wistar ,Cellular localization ,media_common ,Chemistry ,Organic Chemistry ,021001 nanoscience & nanotechnology ,Bioavailability ,Benzoxazines ,Rats ,Drug Combinations ,Lactoferrin ,030104 developmental biology ,Anti-Retroviral Agents ,Lamivudine ,Alkynes ,Toxicity ,Drug delivery ,HIV-1 ,Molecular Medicine ,Nanoparticles ,Female ,0210 nano-technology ,Zidovudine ,Biotechnology ,Half-Life - Abstract
To enhance efficacy, bioavailability and reduce toxicity of first-line highly active anti-retroviral regimen, zidovudine + efavirenz + lamivudine loaded lactoferrin nanoparticles were prepared (FLART-NP) and characterized for physicochemical properties, bioactivity and pharmacokinetic profile. Nanoparticles were prepared using sol-oil protocol and characterized using different sources such as FE-SEM, AFM, NanoSight, and FT-IR. In-vitro and in-vivo studies have been done to access the encapsulation-efficiency, cellular localization, release kinetics, safety analysis, biodistribution and pharmacokinetics. FLART-NP with a mean diameter of 67 nm (FE-SEM) and an encapsulation efficiency of >58% for each drug were prepared. In-vitro studies suggest that FLART-NP deliver the maximum of its payload at pH5 with a minimum burst release throughout the study period with negligible toxicity to the erythrocytes plus improved in-vitro anti-HIV activity. FLART-NP has improved the in-vivo pharmacokinetics (PK) profiles over the free drugs; an average of >4fold increase in AUC and AUMC, 30% increase in the Cmax, >2fold in the half-life of each drug. Biodistribution data suggest that FLART-NP has improved the bioavailability of all drugs with less tissue-related inflammation as suggested with histopathological evaluation The triple-drug loaded nanoparticles have various advantages against soluble (free) drug combination in terms of enhanced bioavailability, improved PK profile and diminished drug-associated toxicity.
- Published
- 2016
32. Triple combination MPT vaginal microbicide using curcumin and efavirenz loaded lactoferrin nanoparticles
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C. Bhaskar, Anand K. Kondapi, Prashant Kumar, Yeruva Samrajya Lakshmi, and Golla Kishore
- Subjects
Cyclopropanes ,0301 basic medicine ,Curcumin ,Efavirenz ,Cmax ,02 engineering and technology ,Pharmacology ,Chemoprevention ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,Anti-Infective Agents ,Pharmacokinetics ,Animals ,Vaginitis ,Microbial Viability ,Multidisciplinary ,biology ,Vaginal microbicide ,Lactoferrin ,021001 nanoscience & nanotechnology ,Benzoxazines ,Rats ,Bioavailability ,Administration, Intravaginal ,Lactobacillus ,030104 developmental biology ,chemistry ,Alkynes ,Toxicity ,biology.protein ,Nanoparticles ,Female ,Pre-Exposure Prophylaxis ,0210 nano-technology - Abstract
We report that a combination of anti-HIV-1 drug efavirenz (EFV), anti-microbial-spermicidal curcumin (Cur) and lactoferrin nanoparticles (ECNPs) act as MPT formulation. These nanoparticles are of well dispersed spherical shape with 40–70 nm size, with encapsulation efficiency of 63 ± 1.9% of Cur & 61.5% ± 1.6 of EFV, significantly higher than that of single drug nanoparticles (Cur, 59 ± 1.34%; EFV: 58.4 ± 1.79). ECNPs were found to be sensitive at pH 5 and 6 and have not effected viability of vaginal micro-flora, Lactobacillus. Studies in rats showed that ECNPs delivers 88–124% more drugs in vaginal lavage as compared to its soluble form, either as single or combination of EFV and Cur. The ECNPs also shows 1.39–4.73 fold lower concentration of absorption in vaginal tissue and plasma compared to soluble EFV + Cur. Furthermore, ECNPs show significant reduction in inflammatory responses by 1.6–3.0 fold in terms of IL-6 and TNF-α in vaginal tissue and plasma compared to soluble EFV + Cur. ECNPs showed improved pharmacokinetics profiles in vaginal lavage with more than 50% of enhancement in AUC, AUMC, Cmax and t1/2 suggesting longer exposure of Cur and EFV in vaginal lavage compared to soluble EFV + Cur. Histopathological analysis of vaginal tissue shows remarkably lower toxicity of ECNPs compared to soluble EFV + Cur. In conclusion, ECNPs are significantly safe and exhibit higher bioavailability thus constitute an effective MPT against HIV.
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- 2016
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33. Role of Host Proteins in HIV-1 Early Replication
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Anand K. Kondapi and Lokeswara S. Balakrishna
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Licensing factor ,RNA interference ,Immunoprecipitation ,Biology ,Pre-replication complex ,Receptor ,APOBEC3G ,Intracellular ,Yeast ,Cell biology - Abstract
After 33 years of the identification of HIV-1 infection, very little is known about the role of host cellular proteins. Till now considerable work has been done in the area of hostpathogen interactions facilitated by the viral proteins and host receptors. The role of the main receptor CD4 and co-receptors like CCR5, CXCR4 and their alternative receptors were well studied in disease progression. But the intracellular events during the hostpathogen interactions were poorly understood. Much data is available based on the glob‐ al analysis of genome-wide RNA interference screens, yeast two-hybrid system and coimmunoprecipitation studies but their exact roles are not yet characterized. There are very few host proteins like APOBEC3G, LEDGF/p75, INI1, HMG I(Y), BAF which are well studied and characterized. Majority of the reported proteins are attributed to multi‐ ple functions. It will be useful to study such proteins to develop as future candidates in HIV-1 therapeutics.
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- 2016
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34. Topoisomerase IIβ regulates base excision repair capacity of neurons
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Kalluri Subba Rao, Umakanta Swain, K. Preeti Gupta, and Anand K. Kondapi
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Alkylating Agents ,Aging ,Time Factors ,DNA Ligases ,DNA Repair ,DNA damage ,DNA repair ,Diketopiperazines ,Biology ,Transfection ,Piperazines ,Cerebellum ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,Animals ,Topoisomerase II Inhibitors ,Rats, Wistar ,Uracil-DNA Glycosidase ,Cells, Cultured ,Cellular Senescence ,Neurons ,chemistry.chemical_classification ,Gene knockdown ,DNA ligase ,Dose-Response Relationship, Drug ,Topoisomerase ,Base excision repair ,Molecular biology ,Rats ,DNA-Binding Proteins ,Comet assay ,DNA Topoisomerases, Type II ,Animals, Newborn ,chemistry ,Ethylnitrosourea ,Gene Knockdown Techniques ,biology.protein ,RNA Interference ,Comet Assay ,DNA Damage ,Mutagens ,Developmental Biology - Abstract
Topoisomerase IIβ (TopoIIβ), an enzyme involved in DNA rearrangements, is predominantly present in brain and its levels are shown to decrease with age. This study characterizes the function of TopoIIβ in regulating BER (base excision repair) activity. TopoIIβ deficient granule neurons (CGNT⁻) show greater sensitivity to N-ethyl N-nitroso urea (ENU)-mediated DNA damage. The cell-free extracts of TopoIIβ knockdown cells (ECGNT⁻) show a significant decrease in G-U BER activity during ENU-treatment as well as during recovery, suggesting that TopoIIβ promotes G-U BER activity. Since G-U BER activity is not affected in the presence of ICRF-193, catalytic inhibitor of TopoIIβ, the activity of enzyme per se may not be participating in BER activity. Further characterization of the activities of BER enzymes present in ECGNT⁻ shows that uracil DNA-glycosylase (UDG) and ligase (LIG) activities decrease significantly in both ENU treatment and recovery. Supplementation of TopoIIβ to ECGNT⁻ does not restore ligation activity and ICRF-193 does not influence the LIG activity. These results suggest a role, at least an indirect one, of TopoIIβ in the repair of ENU-mediated strand breaks via BER pathway including the activities of UDG and LIG.
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- 2012
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35. CARMUSTINE LOADED LACTOFERRIN NANOPARTICLES DEMONSTRATES AN ENHANCED ANTIPROLIFERATIVE ACTIVITY AGAINST GLIOBLASTOMA IN VITRO
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Anand K. Kondapi and Harikiran Athmakur
- Subjects
0301 basic medicine ,Drug ,Carmustine ,biology ,Lactoferrin ,Chemistry ,media_common.quotation_subject ,Pharmaceutical Science ,02 engineering and technology ,Matrix (biology) ,Pharmacology ,021001 nanoscience & nanotechnology ,In vitro ,03 medical and health sciences ,030104 developmental biology ,Targeted drug delivery ,Drug delivery ,biology.protein ,Extracellular ,medicine ,0210 nano-technology ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,media_common ,medicine.drug - Abstract
Objective: Despite sophisticated treatment regimens, there is no significant improvement in the mortality rates of glioblastoma due to insufficient dosage delivery, reoccurrence of tumors, higher systemic toxicity, etc. Since brain endothelial cells and glioblastoma cells express lactoferrin receptors, a target-specific drug delivery vehicle was developed using lactoferrin itself as a matrix, into which carmustine was loaded. The objective was to use carmustine loaded lactoferrin nanoparticles (CLN) to achieve higher therapeutic efficacy and target specificity compared to free carmustine.Methods: CLN were prepared using the Sol-oil method. The nanoparticles prepared were characterized for their size, shape, polydispersity, and stability using FESEM and DLS methods. Drug loading and drug releasing efficiencies were also estimated. Further, cellular uptake of nanoparticles and their antiproliferative efficacy against glioblastoma cells were evaluated.Results: Characterization of CLN showed that they were spherical with ≤ 41 nm diameter and exhibited homogeneously dispersed stable distribution. Loading efficiency of carmustine in CLN was estimated to be 43±3.7 %. Drug release from the nanoparticles was pH dependent with the maximum observed at pH 5. At physiological and gastric pH, drug release was lower, whereas maximum release was observed at endocytotic vesicular and around tumor extracellular pH. Confocal microscopic studies showed an active cellular uptake of nanoparticles. Results of antiproliferative analysis substantiated a higher antiproliferative effect for CLN compared to free carmustine.Conclusion: The results of the study demonstrated that CLN serves as a vital tool, in designing an effective treatment strategy for targeted drug delivery to glioblastoma.
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- 2018
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36. Design, synthesis, and discovery of novel non-peptide inhibitor of Caspase-3 using ligand based and structure based virtual screening approach
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Anand K. Kondapi, Ramababu Bolligarla, P. Jhansi Lakshmi, M. Srinivas Mohan, B.V.S. Suneel Kumar, M. Uday Bhanu, Ravi Shasi Nayana, Samar K. Das, and Muttineni Ravikumar
- Subjects
Proteases ,Databases, Factual ,Molecular model ,Clinical Biochemistry ,Pharmaceutical Science ,Cysteine Proteinase Inhibitors ,Biochemistry ,Chemical synthesis ,Catalytic Domain ,Cell Line, Tumor ,Drug Discovery ,Humans ,Computer Simulation ,Molecular Biology ,Caspase ,Virtual screening ,biology ,Caspase 3 ,Chemistry ,Organic Chemistry ,Caspase Inhibitors ,Models, Chemical ,Enzyme inhibitor ,Docking (molecular) ,Drug Design ,biology.protein ,Molecular Medicine ,Pharmacophore - Abstract
Caspase-3 belonging to a family of cysteine proteases is main executioner of apoptotic cascade pathway. The inhibitors of this protein are useful in the treatment of cardiomyopathy and neurodegenerative diseases. For the discovery of novel Caspase-3 non-peptide inhibitors from Maybridge database, ligand based and structure based virtual screening methods were used. Quantitative 3D pharmacophore models were generated using 25 known inhibitors of Caspase-3 and it was used as initial screen to retrieve the hits from the database. These compounds with high estimated activity were analyzed for drug like properties and docking studies were performed, to study the interaction between new hits and active site. One of the hits (AW01208), with good predictions was selected for synthesis and biological screening. This compound showed an inhibition activity against Caspase-3 in SKNH cell lines.
- Published
- 2009
- Full Text
- View/download PDF
37. Neuroprotective effect of curcumin-loaded lactoferrin nano particles against rotenone induced neurotoxicity
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Anand K. Kondapi, V. Satish Bollimpelli, Sonali Kumari, and Prashant Kumar
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Curcumin ,Cell Survival ,Drug Compounding ,Neuroprotection ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Dopaminergic Cell ,Cell Line, Tumor ,Rotenone ,medicine ,Humans ,chemistry.chemical_classification ,Reactive oxygen species ,biology ,Lactoferrin ,Neurotoxicity ,Cell Biology ,medicine.disease ,Neuroprotective Agents ,chemistry ,Biochemistry ,Drug delivery ,Biophysics ,biology.protein ,Nanoparticles ,Reactive Oxygen Species - Abstract
Curcumin is known to have neuroprotective role and possess antioxidant, anti-inflammatory activities. Rotenone, a flavonoid induced neurotoxicity in dopaminergic cells is being widely studied in Parkinson's Disease (PD) research. In the present study, curcumin loaded lactoferrin nano particles prepared by sol-oil chemistry were used to protect dopaminergic cell line SK-N-SH against rotenone induced neurotoxicity. These curcumin loaded nano particles were of 43-60 nm diameter size and around 100 nm hydrodynamic size as assessed by transmission electron microscopy, atomic force microscopy and dynamic light scattering analysis respectively. The encapsulation efficiency was 61.3% ± 2.4%. Cellular uptake of curcumin through these nano particles was confirmed by confocal imaging and spectrofluorimetric analysis. The curcumin loaded lactoferrin nanoparticles showed greater intracellular drug uptake, sustained retention and greater neuroprotection than soluble counterpart. Neuroprotective activity was characterized through viability assays and by estimating ROS levels. Furthermore rotenone induced PD like features were characterized by decrease in tyrosine hydroxylase expression and increase in α-synuclein expression. Taken together curcumin loaded lactoferrin nanoparticles could be a promising drug delivery strategy against neurotoxicity in dopaminergic neurons.
- Published
- 2015
38. Erratum to: Analysis of gene expression during aging of CGNs in culture: implication of SLIT2 and NPY in senescence
- Author
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Anand K. Kondapi, K. Preeti Gupta, Pankaj Singh Dholaniya, and Anil Kumar Chekuri
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Genetics ,Senescence ,Aging ,Mitochondrial DNA ,DNA repair ,DNA damage ,General Medicine ,Biology ,Chromatin ,Cell biology ,Nuclear DNA ,Gene expression ,Geriatrics and Gerontology ,Gene - Abstract
Senescence is the major key factor that leads to the loss of neurons throughout aging. Cellular senescence is not the consequence of single cause, but there are multiple aspects which may induce senescence in a cell. Various causes such as gene expression, molecular interactions and protein processing and chromatin organization are described as causal factor for senescence. It is well known that the damage to the nuclear or mitochondrial DNA contributes to the aging either directly by inducing the apoptosis/cellular senescence or indirectly by altering cellular functions. The significant nuclear DNA damage with the age is directly associated with the continuous declining in DNA repair. The continuous decline in expression of topoisomerase 2 beta (Topo IIβ) in cultured cerebellar granule neurons over time indicated the decline in the repair of damage DNA. DNA Topo IIβ is an enzyme that is crucial for solving topological problems of DNA and thus has an important role in DNA repair. The enzyme is predominantly present in non-proliferating cells such as neurons. In this paper, we have studied the genes which were differentially expressed over time in cultured cerebellar granule neurons (CGNs) and identified potential genes associated with the senescence. Our results showed that the two genes neuropeptide Y (Npy) and Slit homolog 2 (Drosophila) (Slit2) gradually increase during aging, and upon suppression of these two genes, there was gradual increase in cell viability along with restoration of the expression of Topo IIβ and potential repair proteins.
- Published
- 2015
- Full Text
- View/download PDF
39. Differential sensitivity of immature and mature ventral mesencephalic neurons to rotenone induced neurotoxicity in vitro
- Author
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Anand K. Kondapi and V. Satish Bollimpelli
- Subjects
Programmed cell death ,Parkinson's disease ,Curcumin ,Caspase 3 ,Biology ,Toxicology ,Midbrain ,chemistry.chemical_compound ,Mesencephalon ,Rotenone ,medicine ,Animals ,Rats, Wistar ,Cells, Cultured ,chemistry.chemical_classification ,Neurons ,Reactive oxygen species ,Dopaminergic ,Neurotoxicity ,General Medicine ,Anatomy ,medicine.disease ,Cell biology ,Rats ,nervous system ,chemistry ,Female ,Reactive Oxygen Species - Abstract
Rotenone induced neuronal toxicity in ventral mesencephalic (VM) dopaminergic (DA) neurons in culture is widely accepted as an important model for the investigation of Parkinson's disease (PD). However, little is known about developmental stage dependent toxic effects of rotenone on VM neurons in vitro. The objective of present study is to investigate the effect of rotenone on developing VM neurons at immature versus mature stages. Primary VM neurons were cultured in the absence of glial cells. Exposure of VM neurons to rotenone for 2 days induced cell death in both immature and mature neurons in a concentration-dependent manner, but to a greater extent in mature neurons. While rotenone-treated mature VM neurons showed α-synuclein aggregation and sensitivity to DA neurons, immature VM neurons exhibited only DA neuronal sensitivity but not α-synuclein aggregation. In addition, on rotenone treatment, enhancement of caspase-3 activity and reactive oxygen species (ROS) production were higher in mature VM neurons than in immature neurons. These results suggest that even though both mature and immature VM neurons are sensitive to rotenone, their manifestations differ from each other, with only mature VM neurons exhibiting Parkinsonian conditions.
- Published
- 2015
40. A knowledge driven supervised learning approach to identify gene network of differentially up-regulated genes during neuronal senescence in Rattus norvegicus
- Author
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Bapi Raju Surampudi, Pankaj Singh Dholaniya, Anand K. Kondapi, and Soumitra Ghosh
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Statistics and Probability ,Senescence ,Gene regulatory network ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Biological pathway ,Machine Learning ,Downregulation and upregulation ,Gene interaction ,Interaction network ,Animals ,Gene Regulatory Networks ,Gene ,Cellular Senescence ,Oligonucleotide Array Sequence Analysis ,Genetics ,Neurons ,Applied Mathematics ,Gene Expression Profiling ,Supervised learning ,Decision Trees ,Computational Biology ,General Medicine ,Rats ,Up-Regulation ,Modeling and Simulation - Abstract
Various approaches have been described to infer the gene interaction network from expression data. Several models based on computational and mathematical methods are available. The fundamental thing in the identification of the gene interaction is their biological relevance. Two genes belonging to the same pathway are more likely to affect the expression of each other than the genes of two different pathways. In the present study, interaction network of genes is described based on upregulated genes during neuronal senescence in the Cerebellar granule neurons of rat. We have adopted a supervised learning method and used it in combination with biological pathway information of the genes to develop a gene interaction network. Further modular analysis of the network has been done to identify senescence-related marker genes. Currently there is no adequate information available about the genes implicated in neuronal senescence. Thus identifying multipath genes belonging to the pathway affected by senescence might be very useful in studying the senescence process.
- Published
- 2015
41. Analysis of gene expression during aging of CGNs in culture: implication of SLIT2 and NPY in senescence
- Author
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K. Preeti Gupta, Pankaj Singh Dholaniya, Anil Chekuri, and Anand K. Kondapi
- Subjects
Aging ,Gene Expression Regulation, Developmental ,Nerve Tissue Proteins ,General Medicine ,DNA ,Real-Time Polymerase Chain Reaction ,Article ,Rats ,Animals, Newborn ,Cerebellum ,Animals ,Intercellular Signaling Peptides and Proteins ,Neuropeptide Y ,Geriatrics and Gerontology ,Rats, Wistar ,Erratum ,Cells, Cultured - Abstract
Senescence is the major key factor that leads to the loss of neurons throughout aging. Cellular senescence is not the consequence of single cause, but there are multiple aspects which may induce senescence in a cell. Various causes such as gene expression, molecular interactions and protein processing and chromatin organization are described as causal factor for senescence. It is well known that the damage to the nuclear or mitochondrial DNA contributes to the aging either directly by inducing the apoptosis/cellular senescence or indirectly by altering cellular functions. The significant nuclear DNA damage with the age is directly associated with the continuous declining in DNA repair. The continuous decline in expression of topoisomerase 2 beta (Topo IIβ) in cultured cerebellar granule neurons over time indicated the decline in the repair of damage DNA. DNA Topo IIβ is an enzyme that is crucial for solving topological problems of DNA and thus has an important role in DNA repair. The enzyme is predominantly present in non-proliferating cells such as neurons. In this paper, we have studied the genes which were differentially expressed over time in cultured cerebellar granule neurons (CGNs) and identified potential genes associated with the senescence. Our results showed that the two genes neuropeptide Y (Npy) and Slit homolog 2 (Drosophila) (Slit2) gradually increase during aging, and upon suppression of these two genes, there was gradual increase in cell viability along with restoration of the expression of Topo IIβ and potential repair proteins.
- Published
- 2015
42. A conserved molecular action of native and recombinant Epap-1 in inhibition of HIV-1 gp120 mediated viral entry
- Author
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K.P. Roda Rani, Anand K. Kondapi, and Dheeraj Pelluru
- Subjects
viruses ,T cell ,Biophysics ,HIV Envelope Protein gp120 ,Pregnancy Proteins ,Biology ,Biochemistry ,Epitope ,Virus ,law.invention ,HIV Fusion Inhibitors ,Viral entry ,law ,medicine ,Humans ,Molecular Biology ,Glycoproteins ,chemistry.chemical_classification ,Cell fusion ,Innate immune system ,Molecular biology ,Recombinant Proteins ,medicine.anatomical_structure ,chemistry ,HIV-1 ,Recombinant DNA ,Glycoprotein ,HeLa Cells - Abstract
The early expression of Epap-1 (early pregnancy associated protein), a 90 kDa anti-HIV-1 active glycoprotein, in the first trimester placental tissue suggests that it is one of the innate immune factors/proteins protecting the fetus from HIV infections. In the present investigation, we have cloned and expressed Epap-1 in bacterial and baculovirus expression systems. The recombinant Epap-1 as well as native Epap-1 shows a conserved molecular mode of action. These proteins exhibit significant antiviral activity and inhibit the cell fusion reaction between gp120 expressing HeLa (HL2/3) cells and T cell line (SupT1). Further, the rhodamine labeled Epap-1 specifically bound to gp120 expressed on the surface of HL2/3 cells during fusion reaction thereby inhibiting viral entry. Analysis of the interacting gp120 epitopes revealed that Epap-1 binds specifically to epitopes of gp120, recognizing constant-5 (C5) region and the variable-3 (V3) epitope of gp120 expressed on HL2/3 cells; It exhibits specific interaction with C5 region of cell-free virus in four HIV-1 isolates suggesting that the molecular interaction of Epap-1 is specific and is highly conserved in binding to gp120 leading to inhibition of viral entry. Epap-1 can thus be a very efficient natural protection mechanism against cell-free and cell-associated viral infections during early pregnancy.
- Published
- 2006
- Full Text
- View/download PDF
43. A study of the Topoisomerase II activity in HIV-1 replication using the ferrocene derivatives as probes
- Author
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Anand K. Kondapi, A.D. Saikrishna, and N. Satyanarayana
- Subjects
DNA Replication ,Metallocenes ,Morpholines ,Biophysics ,Eukaryotic DNA replication ,Biology ,Virus Replication ,Biochemistry ,Proviruses ,Western blot ,Antigens, Neoplasm ,Cell Line, Tumor ,Organometallic Compounds ,medicine ,Humans ,Topoisomerase II Inhibitors ,Ferrous Compounds ,Phosphorylation ,Oxazoles ,Molecular Biology ,Cell Proliferation ,chemistry.chemical_classification ,medicine.diagnostic_test ,Cell growth ,Topoisomerase ,DNA replication ,Molecular biology ,DNA-Binding Proteins ,Isoenzymes ,DNA Topoisomerases, Type II ,Enzyme ,chemistry ,Cell culture ,DNA, Viral ,HIV-1 ,biology.protein ,Topoisomerase-II Inhibitor - Abstract
Human Topoisomerase II is present in two isoforms, 170KDa alpha and 180KDa beta. Both the isoforms play a crucial role in maintenance of topological changes during DNA replication and recombination. It has been shown that Topoisomerase II activity is required for HIV-1 replication and the enzyme is phosphorylated during early time points of HIV-1 replication. In the present study, we have studied the molecular action of Topoisomerase II inhibitors, azalactone ferrocene (AzaFecp), Thiomorpholide amido methyl ferrocene (ThioFecp), and Ruthenium benzene amino pyridine (Ru(ben)Apy) on cell proliferation and also on various events of HIV-1 replication cycle. The Topoisomerase II beta over-expressing neuroblastoma cell line shows a higher sensitivity to these compounds compared to the Sup-T1 cell line. All the three Topoisomerase II inhibitors show significant anti-HIV activity at nanomolar concentrations against an Indian isolate of HIV-1(93IN101) in Sup-T1 cell line. An analysis of action of these compounds on proviral DNA synthesis at 5h of post-infection shows that they inhibit proviral DNA synthesis as well as the formation of pre-integration complexes completely. Further analysis, using polymerase chain reaction and western blot, showed that both the Topoisomerase II alpha and beta isoforms are present in the pre-integration complexes, suggesting their significant role in HIV-1 replication.
- Published
- 2006
- Full Text
- View/download PDF
44. Synthesis and biological evaluation of new 4β-anilino- and 4β-imido-substituted podophyllotoxin congeners
- Author
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M. Rajkumar, D. Rajasekhar Reddy, P.S. Murali Mohan Reddy, N. Lakshmi Gayatri, Anand K. Kondapi, Ahmed Kamal, Mohammed Arifuddin, and Sunanda G. Dastidar
- Subjects
Stereochemistry ,Clinical Biochemistry ,Molecular Conformation ,Pharmaceutical Science ,Antineoplastic Agents ,Imides ,Biochemistry ,Chemical synthesis ,Inhibitory Concentration 50 ,chemistry.chemical_compound ,Cell Line, Tumor ,Drug Discovery ,medicine ,Humans ,Topoisomerase II Inhibitors ,Prodrugs ,Imide ,Cytotoxicity ,Molecular Biology ,Cell Proliferation ,Podophyllotoxin ,Lignan ,chemistry.chemical_classification ,Aniline Compounds ,Bicyclic molecule ,Organic Chemistry ,Aromatic amine ,Models, Chemical ,chemistry ,Molecular Medicine ,Drug Screening Assays, Antitumor ,Lactone ,medicine.drug - Abstract
A series of C-4-anilino- and C-4-imido-substituted new podophyllotoxin congeners have been designed, synthesized, and evaluated for their cytotoxicity and DNA topoisomerase-II (topo-II) inhibition potential. Some of these compounds have exhibited promising in vitro anticancer and topo-II inhibition activity.
- Published
- 2005
- Full Text
- View/download PDF
45. A biochemical analysis of topoisomerase II α and β kinase activity found in HIV-1 infected cells and virus
- Author
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N. Satyanarayana, Gade Padmaja, Marvin S. Reitz, Anand K. Kondapi, and Robin Mukhopadyaya
- Subjects
Gene isoform ,T-Lymphocytes ,Biophysics ,HIV Infections ,Biochemistry ,Serine ,Viral Proteins ,Antigens, Neoplasm ,Enzyme Stability ,Humans ,Kinase activity ,Molecular Biology ,Cells, Cultured ,biology ,Kinase ,Topoisomerase ,DNA replication ,Molecular biology ,DNA-Binding Proteins ,Enzyme Activation ,Isoenzymes ,DNA Topoisomerases, Type II ,HIV-1 ,biology.protein ,Phosphorylation ,Cyclin-dependent kinase 9 - Abstract
Human topoisomerase II plays a crucial role in DNA replication and repair. It exists in two isoforms: topoisomerase II alpha (alpha) and topoisomerase II beta (beta). The alpha isoform is localized predominantly in the nucleus, while the beta isoform exhibits a reticular pattern of distribution both in the cytosol and in the nucleus. We show that both isoforms of topoisomerase II are phosphorylated in HIV infected cells and also by purified viral lysate. An analysis of the phosphorylation of topoisomerase II isoforms showed that extracts of HIV infected cells at 8 and 32 h. post-infection (p.i.) contain maximal phosphorylated topoisomerase II alpha, whereas infected cell extracts at 4 and 64 h p.i. contain maximum levels of phosphorylated topoisomerase II beta. In concurrent to phosphorylated topoisomerase II isoforms, we have also observed increased topoisomerase II alpha kinase activity after 8h p.i and topoisomerase beta kinase activity at 4 and 64 h p.i. These findings suggest that both topoisomerase II alpha and beta kinase activities play an important role in early as well as late stages of HIV-1 replication. Further analysis of purified virus showed that HIV-1 virion contained topoisomerase II isoform-specific kinase activities, which were partially isolated. One of the kinase activities of higher hydrophobicity can phosphorylate both topoisomerase II alpha and beta, while lower hydrophobic kinase could predominantly phosphorylate topoisomerase II alpha. The phosphorylation status was correlated with catalytic activity of the enzyme. Western blot analysis using phosphoamino-specific antibodies shows that both the kinase activities catalyze the phosphorylation at serine residues of topoisomerase II alpha and beta. The catalytic inhibitions by serine kinase inhibitors further suggest that the alpha and beta kinase activities associated with virus are distinctly different.
- Published
- 2005
- Full Text
- View/download PDF
46. New potent cytotoxic lamellarin alkaloids from Indian ascidian Didemnum obscurum
- Author
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M. Srinivasulu, N. Satyanarayana, Anand K. Kondapi, Yenamandra Venkateswarlu, and S. Malla Reddy
- Subjects
biology ,Chemistry ,Stereochemistry ,Organic Chemistry ,Drug Discovery ,Cytotoxic T cell ,General Medicine ,Spectral data ,biology.organism_classification ,Biochemistry ,Didemnum - Abstract
Chemical investigations of the ascidian Didemnum obscurum has resulted in the isolation of four new lamellarin alkaloids, lamellarin-ζ ( 1 ), lamellarin-η ( 2 ), lamellarin-ϕ ( 3 ) and lamellarin-χ ( 4 ) along with seven known lamellarins, lamellarin-K ( 5 ), lamellarin-I ( 6 ), lamellarin-J ( 7 ), lamellarin-K triacetate ( 8 ), lamellarin-L triacetate ( 9 ), lamellarin-F ( 10 ) and lamellarin-T diacetate ( 11 ). The structures of the compounds 1–11 were established by detailed analysis of NMR spectral data. Cytotoxic activity of the isolates has been done against coloractal cancer cells.
- Published
- 2005
- Full Text
- View/download PDF
47. Mechanism of action of ferrocene derivatives on the catalytic activity of topoisomerase IIα and β—Distinct mode of action of two derivatives
- Author
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Gayatri Panda, Anand K. Kondapi, and A.D. Sai Krishna
- Subjects
Models, Molecular ,Hot Temperature ,Metallocenes ,Stereochemistry ,Morpholines ,Static Electricity ,Molecular Conformation ,Biophysics ,Quantitative Structure-Activity Relationship ,Thymus Gland ,Plasma protein binding ,Biochemistry ,Catalysis ,Inhibitory Concentration 50 ,Lactones ,Mice ,Structure-Activity Relationship ,chemistry.chemical_compound ,Antigens, Neoplasm ,medicine ,Animals ,Protein Isoforms ,Structure–activity relationship ,Ferrous Compounds ,Mode of action ,Oxazoles ,Molecular Biology ,Adenosine Triphosphatases ,chemistry.chemical_classification ,biology ,Chemistry ,Topoisomerase ,DNA ,Models, Theoretical ,DNA-Binding Proteins ,DNA Topoisomerases, Type II ,Enzyme ,Models, Chemical ,Mechanism of action ,Ferrocene ,biology.protein ,Cattle ,medicine.symptom ,Software ,Protein Binding - Abstract
Topoisomerase II is found to be present in two isoforms alpha and beta, and both the isoforms are regulated in cancerous tissue. Development of isoform-specific topoisomerase II poisons has been of great interest for cancer-specific drug targeting. In the present investigation using quantitative structure-activity analysis of ferrocene derivatives, we show that two derivatives of ferrocene, azalactone ferrocene and thiomorpholide amido methyl ferrocene, can preferentially inhibit topoisomerase IIbeta activity. Thiomorpholide amido methyl ferrocene shows higher inhibition of catalytic activity (IC(50) = 50 microM) against topoisomerase IIbeta compared to azalactone ferrocene (IC(50) = 100 microM). The analysis of protein DNA intermediates formed in the presence of these two compounds suggests that azalactone ferrocene readily induces formation of cleavable complex in a dose-dependent manner, in comparison with thiomorpholide amido methyl ferrocene. Both the compounds show significant inhibition of DNA-dependent ATPase activity of enzyme. These results suggest that azalactone ferrocene inhibits DNA passage activity of enzyme leading to the formation of cleavable complex, while thiomorpholide amido methyl ferrocene competes with ATP binding resulting in the inhibition of catalytic activity of enzyme. In summary, thiomorpholide amido methyl ferrocene and azalactone ferrocene show distinctly different mechanisms in inhibition of catalytic activity of topoisomerase IIbeta.
- Published
- 2005
- Full Text
- View/download PDF
48. Design, synthesis, biological evaluation and QSAR studies of novel bisepipodophyllotoxins as cytotoxic agents
- Author
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G.B. Ramesh Khanna, Anand K. Kondapi, Ahmed Kamal, P. S. M. M. Reddy, Tasneem Rehana, E. Laxman, Sunanda G. Dastidar, Mohammed Arifuddin, and K. Neelima
- Subjects
Quantitative structure–activity relationship ,Molecular model ,Stereochemistry ,Clinical Biochemistry ,Molecular Conformation ,Quantitative Structure-Activity Relationship ,Pharmaceutical Science ,Biochemistry ,Chemical synthesis ,chemistry.chemical_compound ,Epipodophyllotoxin ,Cell Line, Tumor ,Drug Discovery ,medicine ,Humans ,Topoisomerase II Inhibitors ,Cytotoxicity ,Molecular Biology ,Etoposide ,Podophyllotoxin ,Dose-Response Relationship, Drug ,biology ,Chemistry ,Organic Chemistry ,In vitro ,Enzyme inhibitor ,Drug Design ,biology.protein ,Molecular Medicine ,Drug Screening Assays, Antitumor ,Cell Division ,medicine.drug - Abstract
Two moieties of epipodophyllotoxin have been linked at C4-position to provide novel bisepipodophyllotoxin analogues. These have been evaluated for their anticancer potential and DNA-topoisomerase II poisoning activity. Most of these analogues have exhibited promising in vitro anticancer activity against different human tumour cell lines and interestingly 4(')-O-methylated analogues have shown increased cytotoxic activity. Similarly, the DNA-topo II poisoning activity tested for these compounds has not only exhibited the DNA cleavage potential comparable to etoposide, but for some compounds this cleavage potential is superior to etoposide. Further, an interesting structure-activity relationship of these epipodophyllotoxin dimers have been generated on the basis of GI(50) values. The equations indicated that GI(50) activity is strongly dependent on structural and thermodynamic properties. These QSAR results are discussed in conjunction with conformational analysis from molecular modelling studies. QSAR models developed in these studies will be helpful in the future to design novel potent bispodophyllotoxin analogues by minor structural modifications.
- Published
- 2004
- Full Text
- View/download PDF
49. Topoisomerase II antagonism and anticancer activity of coordinated derivatives of [RuCl2(C6H6)(dmso)]
- Author
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Anand K. Kondapi, Y. N. Vashisht Gopal, and Neelima Konuru
- Subjects
Stereochemistry ,DNA damage ,Intercalation (chemistry) ,Biophysics ,Antineoplastic Agents ,Breast Neoplasms ,In Vitro Techniques ,Cleavage (embryo) ,Biochemistry ,chemistry.chemical_compound ,Organometallic Compounds ,Tumor Cells, Cultured ,Animals ,Humans ,Topoisomerase II Inhibitors ,Dimethyl Sulfoxide ,Enzyme Inhibitors ,Molecular Biology ,chemistry.chemical_classification ,biology ,Chemistry ,Topoisomerase ,DNA, Neoplasm ,Intercalating Agents ,In vitro ,Rats ,DNA Topoisomerases, Type II ,Enzyme ,Colonic Neoplasms ,biology.protein ,Female ,Topoisomerase-II Inhibitor ,Cell Division ,DNA ,DNA Damage - Abstract
Topoisomerase II poisoning and anticancer activity by the organometallic compound [RuCl(2)(C(6)H(6))(dmso)] was shown by us in an earlier study [Biochemistry 38 (1999) 4382]. Since high concentrations of this complex were required to achieve either effects, we have synthesized four derivatives of this complex in which the dimethyl sulphoxide group on the ruthenium atom was replaced with pyridine, 3-aminopyridine, p-aminobenzoic acid, and aminoguanidine. Three of these molecules showed enhanced potency of topoisomerase II poisoning and consequently also showed higher anticancer activity in breast and colon carcinoma cells in vitro. Detailed analysis of the molecular action of these compounds on topoisomerase II activity was carried out using the classical relaxation and cleavage activity of the enzyme, which revealed that the compounds poison topoisomerase II by freezing the enzyme and enzyme-cleaved DNA in a ternary "cleavage complex". The cleavage complex is implicated in the anti-neoplastic activity of these compounds. DNA interaction studies showed that these compounds interact with DNA in much the same way as [RuCl(2)(C(6)H(6))(dmso)], by external binding of the DNA helix. This is unlike most other topoisomerase II poisons, which predominantly interact with DNA through intercalation with the double helix.
- Published
- 2002
- Full Text
- View/download PDF
50. Carboplatin loaded protein nanoparticles exhibit improve anti-proliferative activity in retinoblastoma cells
- Author
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Mohammad Javed Ali, Farhan Ahmed, and Anand K. Kondapi
- Subjects
Drug ,Chemical Phenomena ,Cell Survival ,media_common.quotation_subject ,Antineoplastic Agents ,DNA Fragmentation ,Pharmacology ,Biochemistry ,Carboplatin ,chemistry.chemical_compound ,Structural Biology ,Cell Line, Tumor ,Spectroscopy, Fourier Transform Infrared ,medicine ,Neoplasm ,Humans ,Molecular Biology ,IC50 ,media_common ,Cell Proliferation ,Drug Carriers ,biology ,Retinoblastoma ,Lactoferrin ,Caspase 3 ,Proteins ,General Medicine ,Receptor-mediated endocytosis ,Hydrogen-Ion Concentration ,medicine.disease ,Drug Liberation ,chemistry ,biology.protein ,Nanoparticles ,Intracellular - Abstract
Retinoblastoma, a common neoplasm of eye in children accounts about 9-10% of all paediatric cancer. Carboplatin (carbo) is preferred chemotherapeutic regimen. In this study the prospective of carboplatin loaded apotranferrin (Apo-nano-carbo) and lactoferrin (Lacto-nano-carbo) nanoparticles have been demonstrated for the treatment of retinoblastoma. Apo-nano-carbo and Lacto-nano-carbo were prepared by sol-oil method (as a patented formula) with size of 82-92 nm and 68-81 nm, hydrodynamic size were 142±15 nm and 263±20 nm, encapsulation efficiency were 50%±2.3 and 52%±3.9 respectively. Results of pH dependent-drug release and receptor-blocking assay showed that nanoparticles may deliver drug through receptor mediated endocytosis. The carboplatin loaded nanoparticles shows greater intracellular uptake, sustained retention and thus, high anti-proliferative activity (Apo-nano-carbo IC50=4.31 μg ml(-1), Lacto-nano-carbo IC50=4.16 μg ml(-1), Sol-carbo IC50=13.498 μg ml(-1)) into the retinoblastoma cells compared to their soluble counterpart.
- Published
- 2013
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