1. Droplet digital PCR as a tool for investigating dynamics of cryptic symbionts
- Author
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Anna Lotta Hiillos, Anne Thonig, and Karelyn Emily Knott
- Subjects
infection dynamics ,animal structures ,evoluutiobiologia ,symbioosi ,isäntälajit ,Biology ,cryptic symbiosis ,infektiot ,droplet digital PCR ,populaatiot ,loiset ,isäntäeläimet ,Digital polymerase chain reaction ,QH540-549.5 ,Ecology, Evolution, Behavior and Systematics ,Research Articles ,Nature and Landscape Conservation ,Ecology ,Dynamics (mechanics) ,fungi ,biochemical phenomena, metabolism, and nutrition ,ekosysteemit (ekologia) ,Evolutionary biology ,apicomplexa ,Infection dynamics ,Research Article - Abstract
Interactions among symbiotic organisms and their hosts are major drivers of ecological and evolutionary processes. Monitoring the infection patterns among natural populations and identifying factors affecting these interactions are critical for understanding symbiont–host relationships. However, many of these interactions remain understudied since the knowledge about the symbiont species is lacking, which hinders the development of appropriate tools. In this study, we developed a digital droplet PCR (ddPCR) assay based on apicomplexan COX1 gene to detect an undescribed agamococcidian symbiont. We show that the method gives precise and reproducible results and enables detecting cryptic symbionts in low target concentration. We further exemplify the assay's use to survey seasonally sampled natural host (Pygospio elegans) populations for symbiont infection dynamics. We found that symbiont prevalence differs spatially but does not show seasonal changes. Infection load differed between populations and was low in spring and significantly increased towards fall in all populations. We also found that the symbiont prevalence is affected by host length and population density. Larger hosts were more likely to be infected, and high host densities were found to have a lower probability of infection. The observed variations could be due to characteristics of both symbiont and host biology, especially the seasonal variation in encounter rates. Our findings show that the developed ddPCR assay is a robust tool for detecting undescribed symbionts that are otherwise difficult to quantify, enabling further insight into the impact cryptic symbionts have on their hosts., Many symbiont‐host interactions are understudied due to the lack of knowledge about the symbiont species hindering the development of appropriate tools. Here, we developed a ddPCR assay to detect an undescribed agamococcidian symbiont in its host, Pygospio elegans, and show that the method enables detecting cryptic symbionts even in low target concentration. We further exemplify the assay's use to survey seasonally sampled natural host populations for symbiont infection dynamics.
- Published
- 2021