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In the process of collaborative operation, the unloading automation of the forage harvester is of great significance to improve harvesting efficiency and reduce labor intensity. However, non-standard transport trucks and unstructured field environments make it extremely difficult to identify and properly position loading containers. In this paper, a global model with three coordinate systems is established to describe a collaborative harvesting system. Then, a method based on depth perception is proposed to dynamically identify and position the truck container, including data preprocessing, point cloud pose transformation based on the singular value decomposition (SVD) algorithm, segmentation and projection of the upper edge, edge lines extraction and corner points positioning based on the Random Sample Consensus (RANSAC) algorithm, and fusion and visualization of results on the depth image. Finally, the effectiveness of the proposed method has been verified by field experiments with different trucks. The results demonstrated that the identification accuracy of the container region is about 90%, and the absolute error of center point positioning is less than 100 mm. The proposed method is robust to containers with different appearances and provided a methodological reference for dynamic identification and positioning of containers in forage harvesting.