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3 results on '"Coulter, Max"'

1. Additional file 3 of A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Author

Zhang, Runxuan, Kuo, Richard, Coulter, Max, Calixto, Cristiane P. G., Entizne, Juan Carlos, Guo, Wenbin, Marquez, Yamile, Milne, Linda, Riegler, Stefan, Matsui, Akihiro, Tanaka, Maho, Harvey, Sarah, Gao, Yubang, Wießner-Kroh, Theresa, Paniagua, Alejandro, Crespi, Martin, Denby, Katherine, Hur, Asa ben, Huq, Enamul, Jantsch, Michael, Jarmolowski, Artur, Koester, Tino, Laubinger, Sascha, Li, Qingshun Quinn, Gu, Lianfeng, Seki, Motoaki, Staiger, Dorothee, Sunkar, Ramanjulu, Szweykowska-Kulinska, Zofia, Tu, Shih-Long, Wachter, Andreas, Waugh, Robbie, Xiong, Liming, Zhang, Xiao-Ning, Conesa, Ana, Reddy, Anireddy S. N., Barta, Andrea, Kalyna, Maria, and Brown, John W. S.

Abstract

Additional file 3: Figure S18. Comparison of AtIso transcripts and SJs to Araport and AtRTD2.

Published
2022
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2. Additional file 2 of A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Author

Zhang, Runxuan, Kuo, Richard, Coulter, Max, Calixto, Cristiane P. G., Entizne, Juan Carlos, Guo, Wenbin, Marquez, Yamile, Milne, Linda, Riegler, Stefan, Matsui, Akihiro, Tanaka, Maho, Harvey, Sarah, Gao, Yubang, Wießner-Kroh, Theresa, Paniagua, Alejandro, Crespi, Martin, Denby, Katherine, Hur, Asa ben, Huq, Enamul, Jantsch, Michael, Jarmolowski, Artur, Koester, Tino, Laubinger, Sascha, Li, Qingshun Quinn, Gu, Lianfeng, Seki, Motoaki, Staiger, Dorothee, Sunkar, Ramanjulu, Szweykowska-Kulinska, Zofia, Tu, Shih-Long, Wachter, Andreas, Waugh, Robbie, Xiong, Liming, Zhang, Xiao-Ning, Conesa, Ana, Reddy, Anireddy S. N., Barta, Andrea, Kalyna, Maria, and Brown, John W. S.

Abstract

Additional file 2: Fig. S1. Iso-seq transcripts contain false SJs prior to accurate SJ determination and filtering. Fig. S2. Determination of TSS and TES sites for genes with high and low abundance reads. Fig. S3. Comparison of AtIso TSSs and TESs with previously published transcript start and end sites. Fig. S4. Generation of high-level transcripts. Fig. S5. Number of genes and transcripts contributed to AtIso from each Iso-seq library. Fig. S6. Saturation curve of increase in unique genes and transcripts added to AtIso with addition of each library. Fig. S7. SQANTI3 assessment of quality of long read transcripts in AtRTD3 and AtIso. Fig. S8. Increased number of transcript isoforms in AtRTD3. Fig. S9. Genes with characterised different TSS. Fig. S10. Genes with characterised alternative TES. Fig. S11. Confirmation of AS variant isoforms in the lncRNA, FLORE. Fig. S12. Novel genes in AtRTD3 – lncRNAs. Fig. S13. Chimeric transcripts. Fig. S14. Correlation of splicing ratios calculated from the RNA-seq and HR RT-PCR data including outliers. Fig. S15. Accurate Iso-seq transcript determination identifies THIC RNAs produced by riboswitch. Fig. S16. Novel cold-induced isoform of CIPK1 from AtRTD3. Fig. S17. Novel transcript isoform in AtRTD3 affects expression levels of main transcripts compared to AtRTD2.

Published
2022
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3. Additional file 4 of A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Author

Zhang, Runxuan, Kuo, Richard, Coulter, Max, Calixto, Cristiane P. G., Entizne, Juan Carlos, Guo, Wenbin, Marquez, Yamile, Milne, Linda, Riegler, Stefan, Matsui, Akihiro, Tanaka, Maho, Harvey, Sarah, Gao, Yubang, Wießner-Kroh, Theresa, Paniagua, Alejandro, Crespi, Martin, Denby, Katherine, Hur, Asa ben, Huq, Enamul, Jantsch, Michael, Jarmolowski, Artur, Koester, Tino, Laubinger, Sascha, Li, Qingshun Quinn, Gu, Lianfeng, Seki, Motoaki, Staiger, Dorothee, Sunkar, Ramanjulu, Szweykowska-Kulinska, Zofia, Tu, Shih-Long, Wachter, Andreas, Waugh, Robbie, Xiong, Liming, Zhang, Xiao-Ning, Conesa, Ana, Reddy, Anireddy S. N., Barta, Andrea, Kalyna, Maria, and Brown, John W. S.

Abstract

Additional file 4: Review history.

Published
2022
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