184 results on '"Dipankar Bhattacharya"'
Search Results
2. Probing the shot behaviour in Cygnus X-1 using simultaneous AstroSat-NICER observation
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Yash Bhargava, Nandini Hazra, A R Rao, Ranjeev Misra, Dipankar Bhattacharya, Jayashree Roy, and Md Shah Alam
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High Energy Astrophysical Phenomena (astro-ph.HE) ,Space and Planetary Science ,Astrophysics::High Energy Astrophysical Phenomena ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics::Earth and Planetary Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
We analyse the aperiodic flaring features, also known as shots, observed in Cyg X-1 in the 0.1-80 keV energy band using a 6.39 ks simultaneous observation with AstroSat and NICER. We detect 49 simultaneous shots in the soft and hard X-ray bands with NICER and AstroSat-LAXPC, respectively. We observe the shot profile for the first time in soft X-rays (0.1-3 keV), which shows a spectral peak at $\sim$2 keV. Using time-averaged spectroscopy, we measured the truncation of the inner accretion disk at $6.7\pm0.2$ gravitational radii. The shot-phase resolved spectroscopy allowed us to identify the origin of some of the brightest aperiodic peaks in the soft X-rays. We find that the accretion rate is consistent with a constant during the shots while the inner edge of the accretion disk moves inwards/outwards as these shots rise/decay. We discuss the possible mechanisms causing the swing in the inner radius., Comment: 12 pages, 7 figures, Accepted for publication in MNRAS
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- 2022
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3. An autocrine signaling circuit in hepatic stellate cells underlies advanced fibrosis in non-alcoholic steatohepatitis
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Shuang Wang, Kenneth Li, Eliana Pickholz, Ross Dobie, Kylie P. Matchett, Neil C. Henderson, Chris Carrico, Ian Driver, Martin Borch Jensen, Li Chen, Mathieu Petitjean, Dipankar Bhattacharya, Maria I. Fiel, Xiao Liu, Tatiana Kisseleva, Uri Alon, Miri Adler, Ruslan Medzhitov, and Scott L. Friedman
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NASH ,General Medicine ,non-alcoholic steatohepatitis ,liver ,scRNA ,single cell - Abstract
Advanced hepatic fibrosis, driven by the activation of hepatic stellate cells (HSCs), affects millions worldwide and is the strongest predictor of mortality in nonalcoholic steatohepatitis (NASH); however, there are no approved antifibrotic therapies. To identify antifibrotic drug targets, we integrated progressive transcriptomic and morphological responses that accompany HSC activation in advanced disease using single-nucleus RNA sequencing and tissue clearing in a robust murine NASH model. In advanced fibrosis, we found that an autocrine HSC signaling circuit emerged that was composed of 68 receptor-ligand interactions conserved between murine and human NASH. These predicted interactions were supported by the parallel appearance of markedly increased direct stellate cell-cell contacts in murine NASH. As proof of principle, pharmacological inhibition of one such autocrine interaction, neurotrophic receptor tyrosine kinase 3–neurotrophin 3, inhibited human HSC activation in culture and reversed advanced murine NASH fibrosis. In summary, we uncovered a repertoire of antifibrotic drug targets underlying advanced fibrosis in vivo. The findings suggest a therapeutic paradigm in which stage-specific therapies could yield enhanced antifibrotic efficacy in patients with advanced hepatic fibrosis. This is all of the human data samples and analysis for the paperAn autocrine signaling circuit in hepatic stellate cells underlies advanced fibrosis in nonalcoholic steatohepatitis. GEO data here: GSE212837 The folderliver_data_cellranger_all.zipcontains the raw and filtered cellranger output for every sample. This allows reprocessing of all cells including the use of methods that use empty droplets to calculate ambient RNA. The folderAutocrine_liver_paper_jupyter_notebooks.zipcontains all of the notebooks used for analysis: Autocrine_signaling_liver_data_merge_all_select_celltype_subsets.ipynb is the initial noteboook for processing all datasets and merging. It also contains in the first cell instructions for creating a conda environment that will allow all of the tools to run. There are 5 notebooks for qc and cleaning of each celltype: Autocrine_signaling_liver_data_Stellate_cell_recluster.ipynb,Autocrine_signaling_liver_data_Hepatocyte_cell_recluster.ipynb, Autocrine_signaling_liver_data_Endo_cell_recluster.ipynb,Autocrine_signaling_liver_data_Cholangiocyte_cell_recluster.ipynb, and Autocrine_signaling_liver_data_NKTcell_cell_recluster.ipynb There is a final notebook for re-merging the cleaned celltype objects and final clustering, DE and analysis:Autocrine_signaling_liver_data_recluster_all_cleaned_celltypes_analysis.ipynb The fileraw_all_cellranger.h5ad.gzis all cells passing cellranger filter annotated with celltype and ambient RNA and doublet scoring, but otherwise no cells or genes have been removed. The foldercelltype_subsets_v1.zipcontains the roughly filtered celltypes for each of the celltypes. The foldercleaned_celltype_subsets_for_merge.zipcontains the final qc'd and filtered celltypes that are merged for final analysis. It also contains the final merged and batch normalized object. The python scriptcellphone_db_liver_all_cells_clean.pycontains a script for running cellphoneDB on final data.
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- 2023
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4. Pulsars in AstroSat-CZTI: detection in sub-MeV bands and estimation of spectral index from hardness ratios
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K. G. Anusree, Dipankar Bhattacharya, Varun Bhalerao, and Akash Anumarlapudi
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High Energy Astrophysical Phenomena (astro-ph.HE) ,Space and Planetary Science ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Instrumentation and Methods for Astrophysics ,Instrumentation and Methods for Astrophysics (astro-ph.IM) - Abstract
The Cadmium Zinc Telluride Imager (CZTI) onboard AstroSat, an open detector above $\sim$100 keV, is a promising tool for the investigation of hard X-ray characteristics of $\gamma$-ray pulsars. A custom algorithm has been developed to detect pulsars from long integration ($\sim$years) of archival data, as reported by us earlier. Here we extend this method to include in the analysis an additional $\sim$20% of the CZTI pixels that were earlier ignored due to their lower gain values. Recent efforts have provided better and more secure calibration of these pixels, demonstrating their higher thresholds and extended energy range up to $\sim$1 MeV. Here we use the additional information provided by these pixels, enabling the construction of pulse profiles over a larger energy range. We compare the profiles of the Crab pulsar at different sub-bands and show that the behaviour is consistent with the extended energy coverage. As detailed spectroscopy over this full band remains difficult due to the limited count rate, we construct hardness ratios which, together with AstroSat Mass Model simulations, are able to constrain the power-law index of the radiation spectrum. We present our results for the phase-resolved spectrum of PSR J0534+2200 and for the total pulsed emission of PSR J1513-5908. The recovered photon indices are found to be accurate to within $\sim 20$%., Comment: Accepted for publication in the Journal of Astrophysics and Astronomy, 11 pages, 5 figures, 7 tables
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- 2022
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5. Timescale-dependent X-ray to UV time lags of NGC 4593 using high-intensity XMM-Newton observations with Swift and AstroSat
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Max W J Beard, Ian M McHardy, Kavita Kumari, Gulab C Dewangan, Iossif Papadakis, Dipankar Bhattacharya, Kulinder Pal Singh, Daniel Kynoch, and Mayukh Pahari
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High Energy Astrophysical Phenomena (astro-ph.HE) ,Space and Planetary Science ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
We present a 140ks observation of NGC 4593 with XMM-Newton providing simultaneous and continuous PN X-ray and OM UV (UVW1 2910\AA) lightcurves which sample short-timescale variations better than previous observations. These observations were simultaneous with 22d of Swift X-ray and UV/optical monitoring, reported previously, and 4d of AstroSat X-ray (SXT), far (FUV 1541\AA), and near (NUV 2632\AA) UV allowing lag measurements between them and the highly-sampled XMM. From the XMM we find that UVW1 lags behind the X-rays by 29.5$\pm$1.3ks, $\sim$half the lag previously determined from the Swift monitoring. Re-examination of the \textit{Swift} data reveals a bimodal lag distribution, with evidence for both the long and short lags. However if we detrend the Swift lightcurves by LOWESS filtering with a 5d width, only the shorter lag (23.8$\pm$21.2ks) remains. The NUV observations, compared to PN and SXT, confirm the $\sim$30ks lag found by XMM and, after 4d filtering is applied to remove the long-timescale component, the FUV shows a lag of $\sim$23ks. The resultant new UVW1, FUV, and NUV lag spectrum extends to the X-ray band without requiring additional X-ray to UV lag offset, which if the UV arises from reprocessing of X-rays, implies direct illumination of the reprocessor. By referencing previous Swift and HST lag measurements, we obtain an X-ray to optical lag spectrum which agrees with a model using the KYNreverb disc-reprocessing code, assuming the accepted mass of $7.63\times10^{6}M_{\odot}$ and a spin approaching maximum. Previously noted lag contribution from the BLR in the Balmer and Paschen continua are still prominent., Comment: 13 pages, 23 figures
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- 2022
6. Plans for building a prototype SKA regional centre in India
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Yogesh Wadadekar, Dipankar Bhattacharya, Abhirup Datta, Surajit Paul, and Divya Oberoi
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Space and Planetary Science ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Instrumentation and Methods for Astrophysics (astro-ph.IM) - Abstract
In order to deliver the full science potential of the Square Kilometer Array (SKA) telescope, several SKA Regional Centres (SRCs) will be required to be constructed in different SKA member countries around the world. These SRCs will provide high performance compute and storage for the generation of advanced science data products from the basic data streams generated by the SKA Science Data Handling and Processing system, critically necessary to the success of the key science projects to be carried out by the SKA user community. They will also provide support to astronomers to enable them to carry out analysis on very large SKA datasets. Construction of such large data centres is a technical challenge for all SKA member nations. In such a situation, each country plans to construct a smaller SRC over the next few years (2022 onwards), known as a proto-SRC. In India, we propose to construct a proto-SRC which will be used for the analysis of data from SKA pathfinders and precursors with strong Indian involvement such as uGMRT, Meerkat and MWA. We describe our thinking on some aspects of the the storage, compute and network of the proto-SRC and how it will be used for data analysis as well as for carrying out various simulations related to SKA key science projects led by Indian astronomers. We also present our thoughts on how the proto-SRC plans to evaluate emerging hardware and software technologies and to also begin software development in areas of relevance to SKA data processing and analysis such as algorithm implementation, pipeline development and data visualisation software., 7 pages, 2 figures, accepted for publication for the special issue on "Indian participation in the SKA" in the Journal of Astrophysics and Astronomy (JoAA)
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- 2022
7. A New Monte-Carlo Radiative Transfer Simulation of Cyclotron Resonant Scattering Features
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Sandeep Kumar, Suman Bala, and Dipankar Bhattacharya
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High Energy Astrophysical Phenomena (astro-ph.HE) ,Space and Planetary Science ,Astrophysics::High Energy Astrophysical Phenomena ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
We present a new Monte-Carlo radiative transfer code, which we have used to model the cyclotron line features in the environment of a variable magnetic field and plasma density. The code accepts an input continuum and performs only the line transfer by including the three cyclotron resonant processes (cyclotron absorption, cyclotron emission, cyclotron scattering). Subsequently, the effects of gravitational red-shift and light bending on the emergent spectra are computed. We have applied our code to predict the observable spectra from three different emission geometries; 1) an optically thin slab near the stellar surface, 2) an accretion mound formed by the accumulation of the accreted matter, 3) an accretion column representing the zone of a settling flow onto the star. Our results show that the locally emergent spectra from the emission volume are significantly anisotropic. However, in the presence of strong light bending the anisotropy reduces considerably. This averaging also drastically reduces the strength of harmonics higher than second in the observable cyclotron spectra. We find that uniform field slabs produce line features that are too narrow, and mounds with large magnetic distortions produce features that are too wide compared to the average widths of the spectral features observed from various sources. The column with a gently varying (dipole) field produces widths in the intermediate range, similar to those observed., 15 pages, 15 figures, Accepted for publication in MNRAS
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- 2022
8. SoGut: A Soft Robotic Gastric Simulator
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Dipankar Bhattacharya, Ryman Hashem, Leo K. Cheng, Martin Stommel, Yu Dang, Jacqueline Allen, Yuanxiang Liu, and Weiliang Xu
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0209 industrial biotechnology ,Manometry ,Biophysics ,Gastric motility ,Soft robotics ,Lumen (anatomy) ,02 engineering and technology ,020901 industrial engineering & automation ,Human stomach ,Artificial Intelligence ,medicine ,Humans ,Simulation ,Peristalsis ,Physics ,Stomach ,digestive, oral, and skin physiology ,Robotics ,021001 nanoscience & nanotechnology ,Gastric lumen ,Compliance (physiology) ,medicine.anatomical_structure ,Control and Systems Engineering ,Digestion ,0210 nano-technology - Abstract
The human stomach breaks down and transports food by coordinated radial contractions of the gastric walls. The radial contractions periodically propagate through the stomach and constitute the peristaltic contractions, also called the gastric motility. The force, amplitude, and frequency of peristaltic contractions are relevant to massaging and transporting the food contents in the gastric lumen. However, existing gastric simulators have not faithfully replicated gastric motility. Herein, we report a soft robotic gastric simulator (SoGut) that emulates peristaltic contractions in an anatomically realistic way. SoGut incorporates an array of circular air chambers that generate radial contractions. The design and fabrication of SoGut leverages principles from the soft robotics field, which features compliance and adaptability. We studied the force and amplitude of the contractions when the lumen of SoGut was empty or filled with contents of different viscosity. We examined the contracting force using manometry. SoGut exhibited a similar range of contracting force as the human stomach reported in the literature. Besides, we investigated the amplitude of the contractions through videofluoroscopy where the contraction ratio was derived. The contraction ratio as a function of inflation pressure is found to match the observations of in vivo situations. We demonstrated that SoGut can achieve in vitro peristaltic contractions by coordinating the inflation sequence of multiple air chambers. It exhibited the functions to massage and transport the food contents. SoGut can simulate the physiological motions of the human stomach to advance research of digestion.
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- 2021
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9. MR elastography outperforms shear wave elastography for the diagnosis of clinically significant portal hypertension
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Paul Kennedy, Daniel Stocker, Guillermo Carbonell, Daniela Said, Octavia Bane, Stefanie Hectors, Ghadi Abboud, Jordan Cuevas, Bradley D. Bolster, Scott L. Friedman, Sara Lewis, Thomas Schiano, Dipankar Bhattacharya, Aaron Fischman, Swan Thung, Bachir Taouli, University of Zurich, and Taouli, Bachir
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Adult ,Liver Cirrhosis ,10042 Clinic for Diagnostic and Interventional Radiology ,610 Medicine & health ,General Medicine ,Middle Aged ,Portal Pressure ,Article ,Liver ,Hypertension, Portal ,2741 Radiology, Nuclear Medicine and Imaging ,Humans ,Elasticity Imaging Techniques ,Radiology, Nuclear Medicine and imaging ,Prospective Studies ,Aged - Abstract
Portal hypertension (PH) is associated with complications such as ascites and esophageal varices and is typically diagnosed through invasive hepatic venous pressure gradient (HVPG) measurement, which is not widely available. In this study, we aim to assess the diagnostic performance of 2D/3D MR elastography (MRE) and shear wave elastography (SWE) measures of liver and spleen stiffness (LS and SS) and spleen volume, to noninvasively diagnose clinically significant portal hypertension (CSPH) using HVPG measurement as the reference.In this prospective study, patients with liver disease underwent 2D/3D MRE and SWE of the liver and spleen, as well as HVPG measurement. The correlation between MRE/SWE measures of LS/SS and spleen volume with HVPG was assessed. ROC analysis was used to determine the utility of MRE, SWE, and spleen volume for diagnosing CSPH.Thirty-six patients (M/F 22/14, mean age 55 ± 14 years) were included. Of the evaluated parameters, 3D MRE SS had the strongest correlation with HVPG (r = 0.686, p0.001), followed by 2D MRE SS (r = 0.476, p = 0.004). 3D MRE SS displayed the best performance for diagnosis of CSPH (AUC = 0.911) followed by 2D MRE SS (AUC = 0.845) and 3D MRE LS (AUC = 0.804). SWE SS showed poor performance for diagnosis of CSPH (AUC = 0.583) while spleen volume was a fair predictor (AUC = 0.738). 3D MRE SS was significantly superior to SWE LS/SS (p ≤ 0.021) for the diagnosis of CSPH.SS measured with 3D MRE outperforms SWE for the diagnosis of CSPH. SS appears to be a useful biomarker for assessing PH severity. These results need further validation.• Spleen stiffness measured with 2D and 3D MR elastography correlates significantly with hepatic venous pressure gradient measurement. • Spleen stiffness measured with 3D MR elastography demonstrates excellent performance for the diagnosis of clinically significant portal hypertension (AUC 0.911). • Spleen stiffness measured with 3D MR elastography outperforms liver and spleen stiffness measured with shear wave elastography for diagnosis of clinically significant portal hypertension.
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- 2022
10. Sparse Machine Learning Discovery of Dynamic Differential Equation of an Esophageal Swallowing Robot
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Weiliang Xu, Leo K. Cheng, and Dipankar Bhattacharya
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musculoskeletal diseases ,Surface (mathematics) ,Nonlinear system ,Total variation ,Electrical conduit ,Dimension (vector space) ,Control and Systems Engineering ,Differential equation ,Mathematical analysis ,Spectral density ,Electrical and Electronic Engineering ,Deformation (meteorology) - Abstract
Considering the limitation of conventional rheometry measurements and the relevance of the study of food viscosity in the study of dysphagia, we commenced developing a soft-bodied esophageal swallowing robot (ESR). Using experimental data, this paper aims to discover the differential equations (DEs) of the ESR that governs the peristaltic deformation in the esophageal conduit at the given time-varying pressure. The deformation data of the conduit are collected from a quarter version of the ESR due to the inaccessibility to the esophageal occlusion. The three-dimensional displacements of the markers placed on the interior surface of the conduit are measured using a Vicon optical motion capturing system. The dimension of the dataset is first reduced using the principal orthogonal decomposition (POD) method, which is then used to discover the ESR's DEs by the sparse identification of nonlinear dynamics (SINDy). The marker displacements are considered as the ESR's states. The ESR's states are reduced from 27 to 2 by initially applying power spectral density (PSD), and then the POD. The identified states essential to the DEs capture 95 $ \%$ of the total variance of the deformation dataset. Finally, the conduit deformation simulated from the DEs are validated by the experimental measurements in the full version of the ESR.
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- 2020
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11. Guava Seeds Derived Phytochemicals against Dysentery
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Mukundjee Pandey, Lopita Mishra, Dipankar Bhattacharya, Bibhu Prasad Mishra, and Barsha Nayak
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chemistry.chemical_classification ,Traditional medicine ,fungi ,food and beverages ,Dysentery ,Biology ,biology.organism_classification ,medicine.disease ,chemistry.chemical_compound ,Entamoeba histolytica ,Enzyme ,Causative organism ,chemistry ,biology.protein ,medicine ,Protozoa ,Heptadecanoic acid ,Organism ,Alcohol dehydrogenase - Abstract
Phytochemicals are the secondary metabolites that are known as nonnutritive but extremely beneficial for the defensive system for the organism. These phytochemicals can be obtained from all the plants and they play a major role in curing differnt diseases. The extract of the guava seed contains various phytochemicals that can cure the disease like dysentery, caused by the protozoa parasite, namely Entamoeba histolytica. “Biovia Discovery Studio” was used for the molecular docking process. “High positive values of -CDOCKER energy and -CDOCKER interaction energy” suggested that Heptadecanoic acid can effectively deactivate the alcohol dehydrogenase enzyme further inhibiting the biological process of the causative organism.
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- 2020
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12. FASN inhibition targets multiple drivers of NASH by reducing steatosis, inflammation and fibrosis in preclinical models
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Marie O’Farrell, Greg Duke, Richard Crowley, Douglas Buckley, Eduardo B. Martins, Dipankar Bhattacharya, Scott L. Friedman, and George Kemble
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Inflammation ,Lipopolysaccharides ,Liver Cirrhosis ,Multidisciplinary ,Carcinoma, Hepatocellular ,Liver Neoplasms ,Triazoles ,Actins ,Fatty Acid Synthase, Type I ,Disease Models, Animal ,Mice ,Piperidines ,Non-alcoholic Fatty Liver Disease ,Nitriles ,Animals ,Cytokines ,Humans ,Fatty Acid Synthases ,Triglycerides - Abstract
Fatty acid synthase (FASN) is an attractive therapeutic target in non-alcoholic steatohepatitis (NASH) because it drives de novo lipogenesis and mediates pro-inflammatory and fibrogenic signaling. We therefore tested pharmacological inhibition of FASN in human cell culture and in three diet induced mouse models of NASH. Three related FASN inhibitors were used; TVB-3664, TVB-3166 and clinical stage TVB-2640 (denifanstat). In human primary liver microtissues, FASN inhibiton (FASNi) decreased triglyceride (TG) content, consistent with direct anti-steatotic activity. In human hepatic stellate cells, FASNi reduced markers of fibrosis including collagen1α (COL1α1) and α-smooth muscle actin (αSMA). In CD4+ T cells exposed to NASH-related cytokines, FASNi decreased production of Th17 cells, and reduced IL-1β release in LPS-stimulated PBMCs. In mice with diet induced NASH l, FASNi prevented development of hepatic steatosis and fibrosis, and reduced circulating IL-1β. In mice with established diet-induced NASH, FASNi reduced NAFLD activity score, fibrosis score, ALT and TG levels. In the CCl4-induced FAT-NASH mouse model, FASN inhibition decreased hepatic fibrosis and fibrosis markers, and development of hepatocellular carcinoma (HCC) tumors by 85%. These results demonstrate that FASN inhibition attenuates inflammatory and fibrotic drivers of NASH by direct inhibition of immune and stellate cells, beyond decreasing fat accumulation in hepatocytes. FASN inhibition therefore provides an opportunity to target three key hallmarks of NASH.
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- 2022
13. Timing and spectral studies of Cen X-3 in multiple luminosity states using $\textit{AstroSat}$
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Ritesh Bachhar, Gayathri Raman, Varun Bhalerao, and Dipankar Bhattacharya
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High Energy Astrophysical Phenomena (astro-ph.HE) ,Space and Planetary Science ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
We present the results of timing and spectral analysis of the HMXB pulsar, Cen X-3, with the help of observations carried out using the Large Area X-ray Proportional Counter (LAXPC) on board $\textit{AstroSat}$. As part of our analysis, we sampled the source properties during 4 different observation epochs covering two widely different intensity states. We obtain a timing solution and report precise measurements of the spin and orbital parameters corresponding to these observational epochs. The pulse profiles during the two intensity states reveal dramatically varying shapes within a time span of one month. We report the detection of one of the lowest measured frequencies of quasi-periodic oscillations (QPO) at 0.026$\pm$0.001 Hz for Cen X-3 during its low-intensity state. We also find correlated periodic and aperiodic noise components in the power density spectra. We further carried out a phase averaged and a pulse phase resolved spectral study, where we find that the best fit continuum spectrum is well described by an absorbed comptonization model along with a blackbody. Cen X-3 exhibited the presence of the $\sim$28 keV CRSF absorption line and a $\sim$6.6 keV Fe emission line in both the intensity states. Significant variations in the line forming regions and mode of accretion for Cen X-3 within time spans of a month make Cen X-3 a highly dynamic persistent binary., Comment: 14 pages, 8 figures, 2 tables
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- 2022
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14. Basics of Fourier Analysis for High-Energy Astronomy
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Tomaso M. Belloni and Dipankar Bhattacharya
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- 2022
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15. Experimental verification of off-axis polarimetry with Cadmium Zinc Telluride detectors of AstroSat-CZT Imager
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C. S. Vaishnava, N. P. S. Mithun, Santosh V. Vadawale, Esakkiappan Aarthy, Arpit R. Patel, Hiteshkumar L. Adalja, Neeraj Kumar Tiwari, Tinkal Ladiya, Nilam Navale, Tanmoy Chattopadhyay, A. R. Rao, Varun Bhalerao, and Dipankar Bhattacharya
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High Energy Astrophysical Phenomena (astro-ph.HE) ,Space and Planetary Science ,Control and Systems Engineering ,Mechanical Engineering ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena ,Instrumentation ,Instrumentation and Methods for Astrophysics (astro-ph.IM) ,Electronic, Optical and Magnetic Materials - Abstract
The Cadmium Zinc Telluride Imager (CZTI) onboard AstroSat consists of an array of a large number of pixellated CZT detectors capable of measuring the polarization of incident hard X-rays. The polarization measurement capability of CZTI for on-axis sources was experimentally confirmed before the launch. CZTI has yielded tantalizing results on the X-ray polarization of the Crab nebula and pulsar in the energy range of 100 - 380 keV. CZTI has also contributed to the measurement of prompt emission polarization for several Gamma-Ray Bursts (GRBs). However, polarization measurements of off-axis sources like GRBs are challenging. It is vital to experimentally calibrate the CZTI sensitivity to off-axis sources to enhance the credence of the measurements. In this context, we report the verification of the off-axis polarimetric capability of pixellated CZT detectors through the controlled experiments carried out with a CZT detector similar to that used in CZTI and extensive Geant4 simulations of the experimental set-up. Our current results show that the CZT detectors can be used to measure the polarization of bright GRBs up to off-axis angles of ~60 degrees. However, at incidence angles between 45-60 degrees, there might be some systematic effects which needs to be taken into account while interpreting the measured polarisation fraction., Comment: Accepted for publication in JATIS
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- 2022
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16. Extending the energy range of AstroSat-CZTI up to 380 keV with Compton Spectroscopy
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Abhay Kumar, Tanmoy Chattopadhyay, Santosh V Vadawale, A R Rao, N P S Mithun, Varun Bhalerao, and Dipankar Bhattacharya
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High Energy Astrophysical Phenomena (astro-ph.HE) ,Space and Planetary Science ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena ,Instrumentation and Methods for Astrophysics (astro-ph.IM) - Abstract
The CZTI (Cadmium Zinc Telluride Imager) onboard AstroSat is a high energy coded mask imager and spectrometer in the energy range of 20 - 100 keV. Above 100 keV, the dominance of Compton scattering cross-section in CZTI results in a significant number of 2-pixel Compton events and these have been successfully utilized for polarization analysis of Crab pulsar and nebula (and transients like Gamma-ray bursts) in 100 - 380 keV. These 2-pixel Compton events can also be used to extend the spectroscopic energy range of CZTI up to 380 keV for bright sources. However, unlike the spectroscopy in primary energy range, where simultaneous background measurement is available from masked pixels, Compton spectroscopy requires blank sky observation for background measurement. Background subtraction, in this case, is non-trivial because of the presence of both short-term and long-term temporal variations in the data, which depend on multiple factors like earth rotation and the effect of South Atlantic Anomaly (SAA) regions etc. We have developed a methodology of background selection and subtraction that takes into account for these effects. Here, we describe these background selection and subtraction techniques and validate them using spectroscopy of Crab in the extended energy range of 30 - 380 keV region, and compare the obtained spectral parameters with the INTEGRAL results. This new capability allows for the extension of the energy range of AstroSat spectroscopy and will also enable the simultaneous spectro-polarimetric study of other bright sources like Cygnus X-1., Comment: 11 pages, 15 figures, Accepted for publication in MNRAS Journal
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- 2022
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17. Repositioning of a novel GABA-B receptor agonist, AZD3355 (Lesogaberan), for the treatment of non-alcoholic steatohepatitis
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Christine Becker, Leslie P. Cousens, Ryan Hicks, Scott L. Friedman, Joel T. Dudley, Jacqueline Buros Novik, Dipankar Bhattacharya, Maria Isabel Fiel, Björn Magnusson, Nicolas Goossens, Anna Backmark, and Benjamin Readhead
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Adult ,Male ,Agonist ,Lesogaberan ,MAPK/ERK pathway ,medicine.drug_class ,Science ,Metabolic disorders ,Pharmacology ,Article ,Cell Line ,Mice ,chemistry.chemical_compound ,Non-alcoholic Fatty Liver Disease ,In vivo ,Animals ,Humans ,Medicine ,Aged ,Multidisciplinary ,Propylamines ,Drug discovery ,business.industry ,Drug Repositioning ,Gastroenterology ,Obeticholic acid ,Middle Aged ,medicine.disease ,Phosphinic Acids ,digestive system diseases ,Mice, Inbred C57BL ,Disease Models, Animal ,Drug repositioning ,Liver ,chemistry ,GABA-B Receptor Agonists ,Hepatic stellate cell ,Female ,Steatohepatitis ,business - Abstract
Non-alcoholic steatohepatitis (NASH) is a rising health challenge, with no approved drugs. We used a computational drug repositioning strategy to uncover a novel therapy for NASH, identifying a GABA-B receptor agonist, AZD3355 (Lesogaberan) previously evaluated as a therapy for esophageal reflux. AZD3355’s potential efficacy in NASH was tested in human stellate cells, human precision cut liver slices (hPCLS), and in vivo in a well-validated murine model of NASH. In human stellate cells AZD3355 significantly downregulated profibrotic gene and protein expression. Transcriptomic analysis of these responses identified key regulatory nodes impacted by AZD3355, including Myc, as well as MAP and ERK kinases. In PCLS, AZD3355 down-regulated collagen1α1, αSMA and TNF-α mRNAs as well as secreted collagen1α1. In vivo, the drug significantly improved histology, profibrogenic gene expression, and tumor development, which was comparable to activity of obeticholic acid in a robust mouse model of NASH, but awaits further testing to determine its relative efficacy in patients. These data identify a well-tolerated clinical stage asset as a novel candidate therapy for human NASH through its hepatoprotective, anti-inflammatory and antifibrotic mechanisms of action. The approach validates computational methods to identify novel therapies in NASH in uncovering new pathways of disease development that can be rapidly translated into clinical trials.
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- 2021
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18. The peroxisomal transporter ABCD3 plays a major role in hepatic dicarboxylic fatty acid metabolism and lipid homeostasis
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Brandon Stauffer, Scott L. Friedman, Sander M. Houten, Pablo Ranea-Robles, Hongjie Chen, Dipankar Bhattacharya, Chunli Yu, and Michelle Puchowicz
- Subjects
Male ,Mitochondrion ,Article ,chemistry.chemical_compound ,Mice ,ABCD3 ,Genetics ,Peroxisomes ,Animals ,Homeostasis ,Dicarboxylic Acids ,Genetics (clinical) ,Mice, Knockout ,biology ,Fatty acid metabolism ,Chemistry ,Fatty Acids ,Transporter ,Metabolism ,Peroxisome ,Lipid Metabolism ,Mitochondria ,Mice, Inbred C57BL ,Biochemistry ,Liver ,Lipogenesis ,biology.protein ,ATP-Binding Cassette Transporters ,Female ,Oxidation-Reduction - Abstract
Peroxisomes metabolize a specific subset of fatty acids, which include dicarboxylic fatty acids (DCAs) generated by ω-oxidation. Data obtained in vitro suggest that the peroxisomal transporter ABCD3 (also known as PMP70) mediates the transport of DCAs into the peroxisome, but in vivo evidence to support this role is lacking. In this work, we studied an Abcd3 KO mouse model generated by CRISPR-Cas9 technology using targeted and untargeted metabolomics, histology, immunoblotting, and stable isotope tracing technology. We show that ABCD3 functions in hepatic DCA metabolism and uncover a novel role for this peroxisomal transporter in lipid homeostasis. The Abcd3 KO mouse presents with increased hepatic long-chain DCAs, increased urine medium-chain DCAs, lipodystrophy, enhanced hepatic cholesterol synthesis and decreased hepatic de novo lipogenesis. Moreover, our study suggests that DCAs are metabolized by mitochondrial fatty acid β-oxidation when ABCD3 is not functional, reflecting the importance of the metabolic compartmentalization and communication between peroxisomes and mitochondria. In summary, this study provides data on the role of the peroxisomal transporter ABCD3 in hepatic lipid homeostasis and DCA metabolism, and the consequences of peroxisomal dysfunction for the liver.
- Published
- 2021
19. The peroxisomal transporter ABCD3 plays a major role in dicarboxylic fatty acid metabolism
- Author
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Chunli Yu, Sander M. Houten, Michelle Puchowicz, Brandon Stauffer, Scott L. Friedman, Pablo Ranea-Robles, Hongjie Chen, and Dipankar Bhattacharya
- Subjects
chemistry.chemical_compound ,Biochemistry ,biology ,Fatty acid metabolism ,chemistry ,ABCD3 ,Lipogenesis ,biology.protein ,Ketone bodies ,Transporter ,Metabolism ,Peroxisome ,Mitochondrion - Abstract
Peroxisomes metabolize a specific subset of fatty acids, which include dicarboxylic fatty acids (DCAs) generated by ω-oxidation. Data obtained in vitro suggest that the peroxisomal transporter ABCD3 (also known as PMP70) mediates the transport of DCAs into the peroxisome, but in vivo evidence to support this role is lacking. In this study, we studied an Abcd3 KO mouse model generated by CRISPR-Cas9 technology using targeted and untargeted metabolomics, histology, immunoblotting, and stable isotope tracing technology. We show that ABCD3 functions in DCA metabolism and uncover a novel role for this peroxisomal transporter in lipid metabolic homeostasis. The Abcd3 KO mouse presents with lipodystrophy, increased circulating free fatty acids, decreased ketone bodies, enhanced hepatic cholesterol synthesis and decreased hepatic de novo lipogenesis. Moreover, our study suggests that DCAs are metabolized by mitochondrial β-oxidation when ABCD3 is not functional, reflecting the importance of the metabolic compartmentalization and communication between peroxisomes and mitochondria. In summary, this study provides data on the role of the peroxisomal transporter ABCD3 in hepatic lipid homeostasis and DCA metabolism, and the consequences of peroxisomal dysfunction for the liver.
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- 2021
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- View/download PDF
20. Calibration of Scanning Sky Monitor (SSM) onboard AstroSat
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M. C. Ramadevi, Brajpal Singh, Blessy Elizabeth Baby, Abhilash R. Sarwade, Dipankar Bhattacharya, B. T. Ravishankar, and S. Seetha
- Subjects
Physics ,X-ray transient ,Astrophysics::High Energy Astrophysical Phenomena ,media_common.quotation_subject ,High Energy Physics::Phenomenology ,Astrophysics::Instrumentation and Methods for Astrophysics ,Proportional counter ,Astronomy and Astrophysics ,Astrophysics ,Light curve ,Cross Calibration ,Space and Planetary Science ,Sky ,Calibration ,Remote sensing ,media_common - Abstract
SSM onboard AstroSat is designed to monitor X-ray sky in the energy range 2.5–10 keV to detect and locate X-ray sources in outburst. SSM with its three almost identical 1D-proportional counters mounted on a rotating platform, scans the sky in step and stare mode of operation. It observes the X-ray sky and generates light curves for X-ray sources detected. Here, we discuss the positional calibration to carry out imaging with SSM. Onboard calibration of SSM has been carried out with Crab, the standard X-ray source. SSM observations of Crab are compared with that of MAXI on ISS for cross calibration of the instrument.
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- 2021
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21. Using collimated CZTI as all-sky X-ray detector based on Earth occultation technique
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Rahul Srinivasan, Akshat Singhal, Dipankar Bhattacharya, Santosh V. Vadawale, A. R. Rao, Varun Bhalerao, Joseph Louis LAGRANGE (LAGRANGE), Université Côte d'Azur (UCA)-Université Nice Sophia Antipolis (... - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Observatoire de la Côte d'Azur, COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Université Côte d'Azur (UCA)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), Astrophysique Relativiste Théories Expériences Métrologie Instrumentation Signaux (ARTEMIS), Université Nice Sophia Antipolis (... - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de la Côte d'Azur, and COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Université Côte d'Azur (UCA)-Université Côte d'Azur (UCA)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Astrophysics::High Energy Astrophysical Phenomena ,media_common.quotation_subject ,X-ray detector ,FOS: Physical sciences ,Astrophysics ,01 natural sciences ,Occultation ,Collimated light ,chemistry.chemical_compound ,Pulsar ,0103 physical sciences ,[PHYS.PHYS.PHYS-INS-DET]Physics [physics]/Physics [physics]/Instrumentation and Detectors [physics.ins-det] ,Instrumentation and Methods for Astrophysics (astro-ph.IM) ,010303 astronomy & astrophysics ,media_common ,High Energy Astrophysical Phenomena (astro-ph.HE) ,Physics ,010308 nuclear & particles physics ,Detector ,Astrophysics::Instrumentation and Methods for Astrophysics ,Astronomy and Astrophysics ,Cadmium zinc telluride ,Crab Nebula ,chemistry ,Space and Planetary Science ,Sky ,Astrophysics::Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena ,[PHYS.ASTR]Physics [physics]/Astrophysics [astro-ph] - Abstract
All-sky monitors can measure the fluxes of astrophysical sources by measuring the changes in observed counts as the source is occulted by the Earth. Such measurements have typically been carried out by all-sky monitors like $\textit{CGRO}$-BATSE and $\textit{Fermi}$-GBM. We demonstrate for the first time the application of this technique to measure fluxes of sources using a collimated instrument: the Cadmium Zinc Telluride detector on $\textit{AstroSat}$. Reliable flux measurements are obtained for the Crab nebula and pulsar, and for Cyg X-1 by carefully selecting the best occultation data sets. We demonstrate that CZTI can obtain such measurements for hard sources with intensities $\gtrsim1$Crab., Comment: Accepted in the "AstroSat - 5 years" special issue of the Journal of Astrophysics and Astronomy
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- 2021
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22. Hard X-Ray Polarization Catalog for a Five-year Sample of Gamma-Ray Bursts Using AstroSat CZT Imager
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Tanmoy Chattopadhyay, Soumya Gupta, Shabnam Iyyani, Divita Saraogi, Vidushi Sharma, Anastasia Tsvetkova, Ajay Ratheesh, Rahul Gupta, N. P. S. Mithun, C. S. Vaishnava, Vipul Prasad, E. Aarthy, Abhay Kumar, A. R. Rao, Santosh Vadawale, Varun Bhalerao, Dipankar Bhattacharya, Ajay Vibhute, and Dmitry Frederiks
- Subjects
Space and Planetary Science ,Astronomy and Astrophysics - Abstract
The Cadmium Zinc Telluride Imager (CZTI) on board AstroSat has been regularly detecting gamma-ray bursts (GRBs) since its launch in 2015. Its sensitivity to polarization measurements at energies above 100 keV allows CZTI to attempt spectropolarimetric studies of GRBs. Here, we present the first catalog of GRB polarization measurements made by CZTI during its first five years of operation. This includes the time-integrated polarization measurements of the prompt emission of 20 GRBs in the energy range 100–600 keV. The sample includes the bright GRBs that were detected within an angle range of 0°–60° and 120°–180° where the instrument has useful polarization sensitivity and is less prone to systematics. We implement a few new modifications in the analysis to enhance the polarimetric sensitivity of the instrument. The majority of the GRBs in the sample are found to possess less/null polarization across the total bursts’ duration in contrast to a small fraction of five GRBs that exhibit high polarization. The low polarization across the bursts might be due either to the burst being intrinsically weakly polarized or to a varying polarization angle within the burst even when it is highly polarized. In comparison to POLAR measurements, CZTI has detected a larger number of cases with high polarization. This may be a consequence of the higher energy window of CZTI observations, which results in the sampling of a shorter duration of burst emissions than POLAR, thereby probing emissions with less temporal variation in polarization properties.
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- 2022
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23. Advanced quantitative phenotypic fibrosis and steatosis scoring is more superior to histology-based conventional staging in NASH animal models
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Li Chen, Dipankar Bhattacharya, Scott Friedman, and Mathieu Petitjean
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Hepatology - Published
- 2022
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24. A new measurement of the spin and orbital parameters of the high mass X-ray binary Centaurus X-3 using AstroSat
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Jayashree Roy, Parisee Shirke, Dipankar Bhattacharya, and Suman Bala
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High Energy Astrophysical Phenomena (astro-ph.HE) ,Physics ,Orbital elements ,Orbital speed ,010308 nuclear & particles physics ,Astrophysics::High Energy Astrophysical Phenomena ,X-ray binary ,FOS: Physical sciences ,Proportional counter ,Astronomy and Astrophysics ,Astrophysics ,01 natural sciences ,Orbit ,Neutron star ,Pulsar ,Space and Planetary Science ,0103 physical sciences ,Astrophysics::Earth and Planetary Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena ,Spin (physics) ,010303 astronomy & astrophysics - Abstract
We present the timing results of out-of-eclipse observations of Centaurus X-3 spanning half a binary orbit, performed on 12-13 December, 2016 with the Large Area X-ray Proportional Counter (LAXPC) on-board AstroSat. The pulse profile was confirmed to exhibit a prominent pulse peak with a secondary inter-pulse. The systemic spin period of the pulsar was found to be $4.80188 \pm 0.000085$ s in agreement with its spin up trend. The spin up timescale seems to have increased to $7709 \pm 58$ yr that points to negative torque effects in the inner accretion disk. We also report the derived values of projected semi-major axis and orbital velocity of the neutron star., Accepted for publication in the Special Issue of Journal of Astrophysics and Astronomy on AstroSat: Five Years in Orbit, 7 pages, 6 figures
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- 2021
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25. AstroSat/SSM data pipeline
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S. Seetha, S. Vaishali, M. C. Ramadevi, Abhilash R. Sarwade, Dipankar Bhattacharya, and B. T. Ravishankar
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Physics ,Data processing ,Test data generation ,business.industry ,Pipeline (computing) ,Payload (computing) ,Real-time computing ,Astronomy and Astrophysics ,Image processing ,Astrophysics ,Turnaround time ,Space and Planetary Science ,Transfer (computing) ,Data center ,business - Abstract
The data pipeline at the Payload Operation Centre (POC) of the Scanning Sky Monitor (SSM) onboard AstroSat involves: (i) fetching the Level-0 data from the Indian Space Science Data Centre (ISSDC), (ii) Level-0 to Level-1 data processing followed by Level-2 data generation, and (iii) transfer of the Level-1 and Level-2 data back to ISSDC for dissemination of the re-packaged Level-2 data products. The major tasks involved in the generation of Level-1 and Level-2 data products are: (a) quality checks; time, alignment corrections, (b) temporal-HK plots generation, and, (c) image processing; light curve generation. The typical turn around time for this fully automated pipeline is about 25 min for one orbit data. In this paper, details of all the stages of this data pipeline are discussed.
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- 2021
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26. Murine deficiency of peroxisomal L-bifunctional protein (EHHADH) causes medium-chain 3-hydroxydicarboxylic aciduria and perturbs hepatic cholesterol homeostasis
- Author
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Carmen Argmann, Hongjie Chen, Chunli Yu, Tetyana Dodatko, Sander M. Houten, Michelle Puchowicz, Dipankar Bhattacharya, Sara Violante, Scott L. Friedman, and Pablo Ranea-Robles
- Subjects
Male ,Omega oxidation ,Mitochondrion ,Peroxisomal Bifunctional Enzyme ,Article ,Lipid Metabolism, Inborn Errors ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Mice ,Biosynthesis ,ABCD3 ,Animals ,Homeostasis ,Humans ,Dicarboxylic Acids ,Molecular Biology ,Beta oxidation ,chemistry.chemical_classification ,Pharmacology ,Mice, Knockout ,biology ,Liver Diseases ,Cell Biology ,Metabolism ,Peroxisome ,Mitochondria ,Mice, Inbred C57BL ,Enzyme ,Cholesterol ,HEK293 Cells ,chemistry ,Biochemistry ,biology.protein ,Molecular Medicine ,ACOX1 ,Female - Abstract
Peroxisomes play an essential role in the β-oxidation of dicarboxylic acids (DCAs), which are metabolites formed upon ω-oxidation of fatty acids. Genetic evidence linking transporters and enzymes to specific DCA β-oxidation steps is generally lacking. Moreover, the physiological functions of DCA metabolism remain largely unknown. In this study, we aimed to characterize the DCA β-oxidation pathway in human cells, and to evaluate the biological role of DCA metabolism using mice deficient in the peroxisomal L-bifunctional protein (Ehhadh KO mice). In vitro experiments using HEK-293 KO cell lines demonstrate that ABCD3 and ACOX1 are essential in DCA β-oxidation, whereas both the bifunctional proteins (EHHADH and HSD17B4) and the thiolases (ACAA1 and SCPx) have overlapping functions and their contribution may depend on expression level. We also show that medium-chain 3-hydroxydicarboxylic aciduria is a prominent feature of EHHADH deficiency in mice most notably upon inhibition of mitochondrial fatty acid oxidation. Using stable isotope tracing methodology, we confirmed that products of peroxisomal DCA β-oxidation can be transported to mitochondria for further metabolism. Finally, we show that, in liver, Ehhadh KO mice have increased mRNA and protein expression of cholesterol biosynthesis enzymes with decreased (in females) or similar (in males) rate of cholesterol synthesis. We conclude that EHHADH plays an essential role in the metabolism of medium-chain DCAs and postulate that peroxisomal DCA β-oxidation is a regulator of hepatic cholesterol biosynthesis.
- Published
- 2021
27. AstroSat proposal processing system
- Author
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Sachin Narang, Gulab C. Dewangan, Pradnya Bhoye, Dipankar Bhattacharya, C. Balamurugan, Mandar Hulsurkar, and B. N. Ramakrishna
- Subjects
Physics ,010308 nuclear & particles physics ,business.industry ,Mission critical ,Astronomy and Astrophysics ,Astrophysics ,01 natural sciences ,Space observatory ,Software ,Development (topology) ,Space and Planetary Science ,0103 physical sciences ,Systems engineering ,Review process ,Joint (building) ,Architecture ,business ,Space research ,010303 astronomy & astrophysics - Abstract
AstroSat Proposal Processing System (APPS) is a mission critical software solution designed and developed by the joint efforts of Indian Space Research Organization and the Inter-University Centre for Astronomy and Astrophysics. It facilitates the participation of global scientific community to submit scientific proposals for observations with India’s first multi-wavelength space observatory. The software systematizes the proposal submission and review process before the successful proposed observations are scheduled to carryout scientific observations. This paper describes the overall architecture of the system, implementation stratagems, administrative aspects and security aspects of the software. The paper also describes the techniques adopted for seamless day-to-day operations in meeting the mission requirements. As a future direction, the paper summarizes the roadmap for development of a generic multi-mission proposal handling model from the experiences gained through APPS.
- Published
- 2021
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28. Progenitor mass constraints for the type Ib intermediate-luminosity SN 2015ap and the highly extinguished SN 2016bau
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Carolina Gould, Jozsef Vinko, Kuntal Misra, H. Yuk, A. Aryan, Ryoma Ouchi, Keiichi Maeda, Amit Kumar, Timothy W. Ross, WeiKang Zheng, Shashi B. Pandey, Asia deGraw, Rahul Gupta, Alexei V. Filippenko, Samantha Stegman, S. N. Tiwari, Abhay Pratap Yadav, Sameen Yunus, Goni Halevi, Raphael Baer-Way, Sahana Kumar, Isaac Shivvers, Dipankar Bhattacharya, and David A. H. Buckley
- Subjects
High Energy Astrophysical Phenomena (astro-ph.HE) ,Physics ,010308 nuclear & particles physics ,FOS: Physical sciences ,Astronomy and Astrophysics ,Observable ,Radius ,Astrophysics ,Type (model theory) ,Kinetic energy ,01 natural sciences ,Spectral line ,Luminosity ,Supernova ,Astrophysics - Solar and Stellar Astrophysics ,Space and Planetary Science ,0103 physical sciences ,Ejecta ,Astrophysics - High Energy Astrophysical Phenomena ,010303 astronomy & astrophysics ,Solar and Stellar Astrophysics (astro-ph.SR) - Abstract
Photometric and spectroscopic analyses of the intermediate-luminosity Type Ib supernova (SN) 2015ap and of the heavily reddened Type Ib SN~2016bau are discussed. Photometric properties of the two SNe, such as colour evolution, bolometric luminosity, photospheric radius, temperature, and velocity evolution, are also constrained. The ejecta mass, synthesised nickel mass, and kinetic energy of the ejecta are calculated from their light-curve analysis. We also model and compare the spectra of SN~2015ap and SN~2016bau at various stages of their evolution. The P~Cygni profiles of various lines present in the spectra are used to determine the velocity evolution of the ejecta. To account for the observed photometric and spectroscopic properties of the two SNe, we have computed 12\,$M_\odot$ zero-age main sequence (ZAMS) star models and evolved them until the onset of core collapse using the publicly available stellar-evolution code {\tt MESA}. Synthetic explosions were produced using the public version of {\tt STELLA} and another publicly available code, {\tt SNEC}, utilising the {\tt MESA} models. {\tt SNEC} and {\tt STELLA} provide various observable properties such as the bolometric luminosity and velocity evolution. The parameters produced by {\tt SNEC}/{\tt STELLA} and our observations show close agreement with each other, thus supporting a 12\,$M_\odot$ ZAMS star as the possible progenitor for SN~2015ap, while the progenitor of SN~2016bau is slightly less massive, being close to the boundary between SN and non-SN as the final product., 23 pages, 24 figures, 7 tables; Accepted for publication in MNRAS
- Published
- 2021
29. Repositioning of a Novel GABA-B Receptor Agonist, AZD3355 (Lesogaberan), for the Treatment of Non-alcoholic Steatohepatitis
- Author
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Dipankar Bhattacharya, Christine Becker, Benjamin Readhead, Nicolas Goossens, Jacqueline Novik, Maria Isabel Fiel, Leslie P. Cousens, Björn Magnusson, Anna Backmark, Ryan Hicks, Joel T. Dudley, and Scott L. Friedman
- Abstract
Non-alcoholic steatohepatitis (NASH) is a rising health challenge, with no approved drugs. We used a computational drug repositioning strategy to uncover a novel therapy for NASH, identifying a GABA-B receptor agonist, AZD3355 (lesogaberan) previously evaluated as a therapy for esophageal reflux. AZD3355’s potential efficacy in NASH was tested in human stellate cells, human precision cut liver slices (hPCLS), and in vivo in a well-validated murine model of NASH. In human stellate cells AZD3355 significantly downregulated profibrotic gene and protein expression. Transcriptomic analysis of these responses identified key regulatory nodes impacted by AZD3355, including Myc, as well as MAP and ERK kinases. In PCLS, AZD3355 down-regulated collagen1α1, aSMA and TNF-a mRNA as well as secreted collagen1a1. In vivo, the drug significantly improved histology, profibrogenic gene expression, and tumor development in a robust murine model of NASH, which was comparable to activity of obeticholic acid, an advanced investigational therapy for this disease. These data identify a well-tolerated clinical stage asset as a novel therapy for human NASH through its hepatoprotective, anti-inflammatory and antifibrotic mechanisms of action. The approach validates computational methods to identify novel therapies in NASH in uncovering new pathways of disease development that can be rapidly translated into clinical trials.
- Published
- 2021
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30. Nonlinear Model Predictive Control of a Robotic Soft Esophagus
- Author
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Dipankar Bhattacharya, Peter Xu, Ryman Hashem, and Leo K. Cheng
- Subjects
Computer science ,Soft robotics ,Pressure sensor ,Model predictive control ,Nonlinear system ,medicine.anatomical_structure ,Electrical conduit ,Esophageal stent ,Control theory ,Control and Systems Engineering ,medicine ,Esophagus ,Electrical and Electronic Engineering ,Peristalsis - Abstract
Strictures caused by esophageal cancer can narrow down the esophageal lumen, leading to dysphagia. Palliation of dysphagia has driven the development of a Robotic Soft Esophagus (RoSE) to provide a novel in vitro platform for esophageal stent testing and food viscosity studies. In RoSE, peristaltic wave generation and control were done in an open-loop manner since the conduit lacked visibility and embedded sensing capability. Hence, in this work, RoSE version 2.0 (RoSEv2.0) was designed with embedded Time Of Flight (TOF) and pressure sensors to measure conduit displacement and air pressure, respectively, for modeling and control. Model Predictive Control (MPC) of RoSEv2.0 was implemented to govern the peristalsis and air pressure profile autonomously. The implemented MPC used Sparse Identification Nonlinear Dynamics with Control (SINDYC) models to estimate the future states of ROSEv2.0. The dynamic models were discovered from the TOF and pressure sensors captured data. Peristalsis waves of speed 20 mm/s, wavelength 75 mm, and amplitudes 5, 7.5, and 10 mm were successfully generated by the MPC. Additionally, RoSEv2.0 with the MPC was employed to perform stent migration testing with various food boluses consistencies.
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- 2021
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31. OUP accepted manuscript
- Author
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Kuntal Misra, Ch. Cui, S. R. Oates, J R F Porto, M. D. Caballero-Garcia, Zhi-Yu Zhang, P. Yu. Minaev, C. Wang, Soebur Razzaque, Yi-Zhong Fan, Dipankar Bhattacharya, Bin-Bin Zhang, Petr Kubánek, Amit Kumar, J. C. Tello, A. Aryan, Ronan Cunniffe, J. M. Bai, S. N. Tiwari, Yu-Xin Xin, Shashi B. Pandey, Rahul Gupta, A. Y. Lien, V C Pintado, A. F. Valeev, J. Gorosabel, Brajesh Kumar, A. J. Castro-Tirado, S. Jeong, Bhalerao, Eda Sonbas, Sokolov, Y-D Hu, J. M. Castro Cerón, M. de Pasquale, Dimple Dimple, X. H. Zhao, R. Sanchez-Ramirez, Jagdish C. Joshi, S. Guziy, and Martin Jelínek
- Subjects
Physics ,Spectral evolution ,010308 nuclear & particles physics ,Space and Planetary Science ,0103 physical sciences ,Astronomy and Astrophysics ,Astrophysics ,Gamma-ray burst ,010303 astronomy & astrophysics ,01 natural sciences ,Methods observational ,Afterglow - Abstract
Full list of authors: Gupta, Rahul; Oates, S. R.; Pandey, S. B.; Castro-Tirado, A. J.; Joshi, Jagdish C.; Hu, Y. -D; Valeev, A. F.; Zhang, B. B.; Zhang, Z.; Kumar, Amit; Aryan, A.; Lien, A ; Kumar, B.; Cui, Ch; Wang, Ch; Dimple; Bhattacharya, D.; Sonbas, E.; Bai, J.; Tello, J. C.; Gorosabel, J.; Castro Ceron, J. M.; Porto, J. R. F.; Misra, K.; De Pasquale, M.; Caballero-Garcia, M. D.; Jelinek, M.; Kubanek, P.; Minaev, P.; Cunniffe, R.; Sanchez-Ramirez, R.; Guziy, S.; Jeong, S.; Tiwari, S. N.; Razzaque, S.; Bhalerao, V.; Pintado, V. C.; Sokolov, V. V.; Zhao, X.; Fan, Y.; Xin, Y.
- Published
- 2021
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32. A machine learning approach for GRB detection in AstroSat CZTI data
- Author
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N. Mukund, Sheelu Abraham, A. R. Rao, Vidushi Sharma, Varun Bhalerao, Dipankar Bhattacharya, Santosh V. Vadawale, A. Vibhute, and Shabnam Iyyani
- Subjects
Physics ,Dynamic time warping ,business.industry ,Template matching ,Pipeline (computing) ,FOS: Physical sciences ,Astronomy and Astrophysics ,Machine learning ,computer.software_genre ,Light curve ,Hierarchical clustering ,Space and Planetary Science ,Metric (mathematics) ,Anomaly detection ,Artificial intelligence ,Noise (video) ,Astrophysics - Instrumentation and Methods for Astrophysics ,business ,Gamma-ray burst ,Instrumentation and Methods for Astrophysics (astro-ph.IM) ,computer - Abstract
We present a machine learning (ML) based method for automated detection of Gamma-Ray Burst (GRB) candidate events in the range 60 keV - 250 keV from the AstroSat Cadmium Zinc Telluride Imager data. We use density-based spatial clustering to detect excess power and carry out an unsupervised hierarchical clustering across all such events to identify the different light curves present in the data. This representation helps understand the instrument's sensitivity to the various GRB populations and identify the major non-astrophysical noise artefacts present in the data. We use Dynamic Time Warping (DTW) to carry out template matching, which ensures the morphological similarity of the detected events with known typical GRB light curves. DTW alleviates the need for a dense template repository often required in matched filtering like searches. The use of a similarity metric facilitates outlier detection suitable for capturing previously unmodelled events. We briefly discuss the characteristics of 35 long GRB candidates detected using the pipeline and show that with minor modifications such as adaptive binning, the method is also sensitive to short GRB events. Augmenting the existing data analysis pipeline with such ML capabilities alleviates the need for extensive manual inspection, enabling quicker response to alerts received from other observatories such as the gravitational-wave detectors., Comment: 9 pages, 7 figures. Matches the published version in MNRAS
- Published
- 2021
33. A generalized event selection algorithm for AstroSat CZT imager data
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P. Pradeep, Santosh V. Vadawale, Varun Bhalerao, S. Sreekumar, Dipankar Bhattacharya, Ajay Ratheesh, N. P. S. Mithun, A. Vibhute, and A. R. Rao
- Subjects
Astrophysics::High Energy Astrophysical Phenomena ,Imaging spectrometer ,FOS: Physical sciences ,Cosmic ray ,Astrophysics ,01 natural sciences ,AstroSat ,cosmic rays ,CZT Imager ,detectors: noise ,detectors: X-rays ,Signal-to-noise ratio ,0103 physical sciences ,Sensitivity (control systems) ,010303 astronomy & astrophysics ,Instrumentation and Methods for Astrophysics (astro-ph.IM) ,Physics ,High Energy Astrophysical Phenomena (astro-ph.HE) ,010308 nuclear & particles physics ,Astrophysics::Instrumentation and Methods for Astrophysics ,Astronomy and Astrophysics ,Space and Planetary Science ,Data analysis ,Transient (oscillation) ,Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Instrumentation and Methods for Astrophysics ,Algorithm ,Energy (signal processing) ,Noise (radio) - Abstract
The Cadmium Zinc Telluride (CZT) Imager on board AstroSat is a hard X-ray imaging spectrometer operating in the energy range of 20 $-$ 100 keV. It also acts as an open hard X-ray monitor above 100 keV capable of detecting transient events like the Gamma-ray Bursts (GRBs). Additionally, the instrument has the sensitivity to measure hard X-ray polarization in the energy range of 100 $-$ 400 keV for bright on-axis sources like Crab and Cygnus X-1 and bright GRBs. As hard X-ray instruments like CZTI are sensitive to cosmic rays in addition to X-rays, it is required to identify and remove particle induced or other noise events and select events for scientific analysis of the data. The present CZTI data analysis pipeline includes algorithms for such event selection, but they have certain limitations. They were primarily designed for the analysis of data from persistent X-ray sources where the source flux is much less than the background and thus are not best suited for sources like GRBs. Here, we re-examine the characteristics of noise events in CZTI and present a generalized event selection method that caters to the analysis of data for all types of sources. The efficacy of the new method is reviewed by examining the Poissonian behavior of the selected events and the signal to noise ratio for GRBs., Comment: Accepted for publication in JAA
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- 2021
34. Absolute Time Calibration of LAXPC aboard AstroSat
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Bhal Chandra Joshi, Dipankar Bhattacharya, and Avishek Basu
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Physics ,High Energy Astrophysical Phenomena (astro-ph.HE) ,Giant Metrewave Radio Telescope ,COSMIC cancer database ,010308 nuclear & particles physics ,Crab Pulsar ,Instrumentation ,Astrophysics::High Energy Astrophysical Phenomena ,Detector ,Astrophysics::Instrumentation and Methods for Astrophysics ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics ,Astrophysics::Cosmology and Extragalactic Astrophysics ,01 natural sciences ,Radio telescope ,Pulsar ,Space and Planetary Science ,0103 physical sciences ,Calibration ,Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena ,010303 astronomy & astrophysics ,Instrumentation and Methods for Astrophysics (astro-ph.IM) ,Remote sensing - Abstract
The AstroSat mission carries several high-energy detectors meant for fast timing studies of cosmic sources. In order to carry out high precision multi-wavelength timing studies, it is essential to calibrate the absolute time stamps of these instruments to the best possible accuracy. We present here the absolute time calibration of the AstroSat LAXPC instrument, utilising the broadband electromagnetic emission from the Crab Pulsar to cross calibrate against Fermi-LAT and ground based radio observatories Giant Metrewave Radio Telescope (GMRT) and the Ooty Radio Telescope (ORT). Using the techniques of pulsar timing, we determine the fixed timing offsets of LAXPC with respect to these different instruments and also compare the offsets with those of another AstroSat instrument, CZTI., Comment: 8 pages, 2 figures, 2 tables. Accepted for publication in the Journal of Astronomy and Astrophysics
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- 2021
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35. OUP accepted manuscript
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Gayathri Raman, Biswajit Paul, Dipankar Bhattacharya, and Varun Varun
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Physics ,Stars ,Amplitude ,Quasi-periodic oscillation ,Pulsar ,Space and Planetary Science ,Astrophysics::High Energy Astrophysical Phenomena ,Proportional counter ,Astronomy and Astrophysics ,Emission spectrum ,Astrophysics ,Light curve ,Line (formation) - Abstract
We present results from timing and spectral analysis of the HMXB X-ray pulsar IGR J19294+1816 observed using \asr during its recent Type-I outburst in October, 2019. AstroSat observations sampled the outburst at the decline phase right after the outburst peak. We carried out timing analysis on the light curves obtained using the Large Area X-ray Proportional Counter (LAXPC) instrument on board AstroSat and measured a spin period of 12.485065$\pm$0.000015 s. The peak in the power density spectrum (PDS) corresponding to the spin period of 12.48 s also shows a broadened base. We also detected a Quasi Periodic Oscillation (QPO) feature at 0.032$\pm$0.002 Hz with an RMS fractional amplitude of $\sim$18% in the PDS. We further carried out a joint spectral analysis using both the Soft X-ray Telescope (SXT) and the LAXPC instruments and detected a Cyclotron Resonant Scattering Feature (CRSF) at 42.7$\pm$0.9 keV and an Fe emission line at 6.4$\pm$0.1 keV. IGR J19294+1816, being an intermediate spin pulsar, has exhibited a plethora of spectral and timing features during its most recent 2019 outburst, adding it to the list of transients that exhibit both a QPO as well as a CRSF.
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- 2021
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36. Sub-MeV spectroscopy with AstroSat-CZT Imager for Gamma Ray Bursts
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E. Aarthy, A. R. Rao, Varun Bhalerao, Abhay Kumar, Santosh V. Vadawale, Sourav Palit, Dipankar Bhattacharya, Tanmoy Chattopadhyay, N. P. S. Mithun, Ajay Ratheesh, S. Gupta, Shabnam Iyyani, and Vidushi Sharma
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Physics ,High Energy Astrophysical Phenomena (astro-ph.HE) ,CZT imager ,Astrophysics::High Energy Astrophysical Phenomena ,AstroSat ,Detector ,Astrophysics::Instrumentation and Methods for Astrophysics ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics ,Spectral line ,gamma ray burst ,sub-MeV spectroscopy ,Space and Planetary Science ,Calibration ,Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Instrumentation and Methods for Astrophysics ,Gamma-ray burst ,Spectroscopy ,Instrumentation and Methods for Astrophysics (astro-ph.IM) ,Energy (signal processing) ,Noise (radio) ,Fermi Gamma-ray Space Telescope - Abstract
Cadmium Zinc Telluride Imager (CZTI) onboard AstroSat has been a prolific Gamma-Ray Burst (GRB) monitor. While the 2-pixel Compton scattered events (100 - 300 keV) are used to extract sensitive spectroscopic information, the inclusion of the low-gain pixels (around 20% of the detector plane) after careful calibration extends the energy range of Compton energy spectra to 600 keV. The new feature also allows single-pixel spectroscopy of the GRBs to the sub-MeV range which is otherwise limited to 150 keV. We also introduced a new noise rejection algorithm in the analysis ('Compton noise'). These new additions not only enhances the spectroscopic sensitivity of CZTI, but the sub-MeV spectroscopy will also allow proper characterization of the GRBs not detected by Fermi. This article describes the methodology of single, Compton event and veto spectroscopy in 100 - 600 keV for the GRBs detected in the first year of operation. CZTI in last five years has detected around 20 bright GRBs. The new methodologies, when applied on the spectral analysis for this large sample of GRBs, has the potential to improve the results significantly and help in better understanding the prompt emission mechanism., Comment: Accepted for publication in Journal of Astrophysics and Astronomy, 5 years of AstroSat special issue
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- 2021
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37. Discovery and Timing of Three Millisecond Pulsars in Radio and Gamma-Rays with the Giant Metrewave Radio Telescope and Fermi Large Area Telescope
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T. J. Johnson, Elizabeth C. Ferrara, Matthew Kerr, Benjamin Stappers, Rajeev Singh Rathour, Bhaswati Bhattacharyya, Jayashree Roy, Peter F. Michelson, Paulo C. C. Freire, Scott M. Ransom, Paul S. Ray, S. Sengupta, A. Kaninghat, P. M. Saz Parkinson, Yashwant Gupta, Dipankar Bhattacharya, David A. Smith, Centre d'Etudes Nucléaires de Bordeaux Gradignan (CENBG), and Université Sciences et Technologies - Bordeaux 1-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Centre National de la Recherche Scientifique (CNRS)
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Physics ,Giant Metrewave Radio Telescope ,010308 nuclear & particles physics ,High-energy astronomy ,Astronomy ,Astronomy and Astrophysics ,Gamma-ray astronomy ,01 natural sciences ,law.invention ,High time-resolution astrophysics ,Telescope ,13. Climate action ,Space and Planetary Science ,Millisecond pulsar ,law ,0103 physical sciences ,[PHYS.ASTR]Physics [physics]/Astrophysics [astro-ph] ,010303 astronomy & astrophysics ,Radio astronomy ,Fermi Gamma-ray Space Telescope - Abstract
We performed deep observations to search for radio pulsations in the directions of 375 unassociated Fermi Large Area Telescope γ-ray sources using the Giant Metrewave Radio Telescope (GMRT) at 322 and 607 MHz. In this paper we report the discovery of three millisecond pulsars (MSPs), PSR J0248+4230, PSR J1207–5050, and PSR J1536–4948. We conducted follow-up timing observations for ∼5 yr with the GMRT and derived phase-coherent timing models for these MSPs. PSR J0248+4230 and J1207–5050 are isolated MSPs having periodicities of 2.60 ms and 4.84 ms. PSR J1536–4948 is a 3.07 ms pulsar in a binary system with an orbital period of ∼62 days about a companion of a minimum mass of 0.32 M ⊙. We also present multifrequency pulse profiles of these MSPs from the GMRT observations. PSR J1536–4948 is an MSP with an extremely wide pulse profile having multiple components. Using the radio timing ephemeris we subsequently detected γ-ray pulsations from these three MSPs, confirming them as the sources powering the γ-ray emission. For PSR J1536–4948 we performed combined radio–γ-ray timing using ∼11.6 yr of γ-ray pulse times of arrival (TOAs) along with the radio TOAs. PSR J1536–4948 also shows evidence for pulsed γ-ray emission out to above 25 GeV, confirming earlier associations of this MSP with a ≥10 GeV point source. The multiwavelength pulse profiles of all three MSPs offer challenges to models of radio and γ-ray emission in pulsar magnetospheres.
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- 2021
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38. A timing-based estimate of the spin of the black hole in MAXI J1820+070
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Tomaso Belloni, Dipankar Bhattacharya, Gabriele Ponti, Sara Motta, and Yash Bhargava
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Physics ,High Energy Astrophysical Phenomena (astro-ph.HE) ,Brightness ,010308 nuclear & particles physics ,Astrophysics::High Energy Astrophysical Phenomena ,Binary number ,FOS: Physical sciences ,Astronomy and Astrophysics ,Context (language use) ,Astrophysics ,Radius ,01 natural sciences ,Black hole ,Space and Planetary Science ,0103 physical sciences ,Precession ,Spin (physics) ,Astrophysics - High Energy Astrophysical Phenomena ,010303 astronomy & astrophysics ,Dimensionless quantity - Abstract
MAXI J1820+070 (ASSASN-18ey) is a Black hole X-ray binary discovered in 2018. The brightness of the source triggered multi-wavelength campaigns of this source from different observatories. We analyse the Power Density Spectra obtained from NICER high cadence observations of the source in the hard state. We obtain the evolution of the characteristic frequencies by modelling the PDS. We interpret the characteristic frequencies of various PDS components (both QPOs and broad band noise components) as variability occurring at a particular radius, and explain them in the context of the Relativistic Precession Model. We estimate the dimensionless spin of the black hole at $0.799^{+0.016}_{-0.015}$ by fitting the Relativistic Precession Model., Comment: 7 pages, 5 figures, Accepted for publication in MNRAS
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- 2021
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39. Imaging calibration of AstroSat Cadmium Zinc Telluride Imager (CZTI)
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Varun Bhalerao, N. P. S. Mithun, Santosh V. Vadawale, A. R. Rao, A. Vibhute, and Dipankar Bhattacharya
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Physics ,FOS: Physical sciences ,Astronomy and Astrophysics ,Cadmium zinc telluride ,chemistry.chemical_compound ,Image reconstruction algorithm ,chemistry ,Space and Planetary Science ,Observatory ,Calibration ,Coded aperture ,Astrophysics - Instrumentation and Methods for Astrophysics ,Image calibration ,Instrumentation and Methods for Astrophysics (astro-ph.IM) ,Remote sensing - Abstract
AstroSat is India's first space-based astronomical observatory, launched on September 28, 2015. One of the payloads aboard AstroSat is the Cadmium Zinc Telluride Imager (CZTI), operating at hard X-rays. CZTI employs a two-dimensional coded aperture mask for the purpose of imaging. In this paper, we discuss various image reconstruction algorithms adopted for the test and calibration of the imaging capability of CZTI and present results from CZTI on-ground as well as in-orbit image calibration., Comment: 16 pages, 21 images, Payload Calibration, Accepted in JAA on AstroSat 5 years special issue
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- 2021
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40. The AstroSat mass model: Imaging and flux studies of off-axis sources with CZTI
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A. R. Rao, Santosh V. Vadawale, A. Vibhute, Sourav Palit, Tanmoy Chattopadhyay, Arvind Balasubramanian, N. P. S. Mithun, S. Gupta, Varun Bhalerao, E. Aarthy, Sujay Mate, Krishnan Kutty, Divita Saraogi, Dipankar Bhattacharya, Institut de recherche en astrophysique et planétologie (IRAP), Institut national des sciences de l'Univers (INSU - CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), and Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)
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media_common.quotation_subject ,FOS: Physical sciences ,Astrophysics ,Radiation ,01 natural sciences ,Spectral line ,010305 fluids & plasmas ,chemistry.chemical_compound ,0103 physical sciences ,Source counts ,[PHYS.PHYS.PHYS-INS-DET]Physics [physics]/Physics [physics]/Instrumentation and Detectors [physics.ins-det] ,Instrumentation and Methods for Astrophysics (astro-ph.IM) ,010303 astronomy & astrophysics ,media_common ,High Energy Astrophysical Phenomena (astro-ph.HE) ,Physics ,Attenuation ,Detector ,AstroSat ,Astrophysics::Instrumentation and Methods for Astrophysics ,Astronomy and Astrophysics ,mass model simulations ,Cadmium zinc telluride ,Computational physics ,Cadmium Zinc Telluride Imager ,chemistry ,Space and Planetary Science ,Sky ,Satellite ,Gamma-ray bursts ,Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena ,[PHYS.ASTR]Physics [physics]/Astrophysics [astro-ph] - Abstract
The Cadmium Zinc Telluride Imager (CZTI) on AstroSat is a hard X-ray coded-aperture mask instrument with a primary field of view of 4.6 x 4.6 degrees (FWHM). The instrument collimators become increasingly transparent at energies above $\sim$100 keV, making CZTI sensitive to radiation from the entire sky. While this has enabled CZTI to detect a large number of off-axis transient sources, calculating the source flux or spectrum requires knowledge of the direction and energy dependent attenuation of the radiation incident upon the detector. Here, we present a GEANT4-based mass model of CZTI and AstroSat that can be used to simulate the satellite response to the incident radiation, and to calculate an effective "response file" for converting the source counts into fluxes and spectra. We provide details of the geometry and interaction physics, and validate the model by comparing the simulations of imaging and flux studies with observations. Spectroscopic validation of the mass model is discussed in a companion paper, Chattopadhyay 2021., Accepted in the "AstroSat - 5 years" special issue of the Journal of Astrophysics and Astronomy
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- 2021
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41. RoSE: A Robotic Soft Esophagus for Endoprosthetic Stent Testing
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Weiliang Xu, Leo K. Cheng, Sherine J. V. Ali, and Dipankar Bhattacharya
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0209 industrial biotechnology ,medicine.medical_specialty ,medicine.medical_treatment ,Biophysics ,02 engineering and technology ,020901 industrial engineering & automation ,Swallowing ,Robotic Surgical Procedures ,Artificial Intelligence ,medicine ,Humans ,In patient ,cardiovascular diseases ,Esophagus ,Radial Force Variation ,business.industry ,Stent ,Robotics ,Esophageal cancer ,equipment and supplies ,021001 nanoscience & nanotechnology ,medicine.disease ,Dysphagia ,Surgery ,surgical procedures, operative ,medicine.anatomical_structure ,Control and Systems Engineering ,Stents ,Knowledge deficit ,medicine.symptom ,0210 nano-technology ,business ,Deglutition Disorders - Abstract
Soft robotic systems are well suited for developing devices for biomedical applications. A bio-mimicking robotic soft esophagus (RoSE) is developed as an in vitro testing device of endoprosthetic stents for dysphagia management. Endoprosthetic stent placement is an immediate and cost-effective therapy for dysphagia caused by malignant esophageal strictures from esophageal cancer. However, later stage complications, such as stent migration, could weaken the swallow efficacy in the esophagus. The stent radial force (RF) on the esophageal wall is pivotal in avoiding stent migration. Due to limited randomized controlled trials in patients, the stent design and stenting guidelines are still unconstructive. To address the knowledge deficit, we have investigated the capabilities of the RoSE by implanting two stents (stent A and B) of different radial stiffness characteristics, to measure the stent RF and its effect on the stent migration. Also, endoscopic manometry on the RoSE under peristalsis has been performed to study the impact of stenting and stent dysfunctionality on the intrabolus pressure signatures (IBPSs) in the RoSE, and further its effects on the swallowing efficacy. Each implanted stent in the RoSE underwent a set of experiments with various test variables (peristalsis velocity and wavelength, and bolus concentrations). In this study, the conducted tests are representative of the application of RoSE to perform a wide-ranging assessment of the stent behavior. The usability of RoSE has been discussed by comparing the results of stent A and B, for various combinations of the test variables mentioned earlier. The results have demonstrated that the stiffer stent B has a higher RF, whereas stent A maintained its RF at a low profile due to its lesser stiffness. The results have also implicated that a high RF is necessary to minimize the stent migration under prolonged peristaltic contractions in the RoSE. For the manometry experiments, stent A slightly increased the IBPS, but the stiffer stent B significantly decreased the IBPS, especially for the higher concentration boluses. It was found that if a stiffer stent buckles, it can reduce the swallow efficacy and cause recurrent dysphagia. Therefore, RoSE is an innovative soft robotic platform that is capable of testing various endoprosthetic stents, thereby offering a solution to many existing clinical challenges in the area of stent testing.
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- 2020
42. Identifying Black Hole Central Engines in Gamma-Ray Bursts
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Vidushi Sharma, Dipankar Bhattacharya, and Shabnam Iyyani
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Physics ,High Energy Astrophysical Phenomena (astro-ph.HE) ,Jet (fluid) ,High-energy astronomy ,Astrophysics::High Energy Astrophysical Phenomena ,Minimum mass ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics ,Magnetar ,Afterglow ,Rotational energy ,Black hole ,General Relativity and Quantum Cosmology ,Space and Planetary Science ,Astrophysics - High Energy Astrophysical Phenomena ,Gamma-ray burst - Abstract
The nature of the gamma-ray burst (GRB) central engine still remains an enigma. Entities widely believed to be capable of powering the extreme jets are magnetars and black holes. The maximum rotational energy that is available in a millisecond magnetar to form a jet is ~10^52 erg. We identify 8 long GRBs whose jet opening angle corrected energetics of the prompt emission episode are >10^52 erg with high confidence level and therefore, their central engines are expected to be black holes. Majority of these GRBs present significant emission in sub-GeV energy range. The X-ray afterglow light curves of these bursts do not show any shallow decay behaviour such as a plateau, however, a few cases exhibit flares and multiple breaks instead of a single power-law decay. For a minimum mass of the black hole (~2 Msun), we find the efficiency of producing a jet from its rotational energy to range between 2%-270%. Highly energetic jets requiring high efficiencies implies that either the mass of these black holes are much larger or there are, in addition, other sources of energy which power the jet. By considering the Blandford-Znajek mechanism of jet formation, we estimate the masses of these black holes to range between ~2-60 Msun. Some of the lighter black holes formed in these catastrophic events are likely candidates to lie in the mass gap region (2-5 Msun)., 19 pages, 8 figures, 5 table, Published in ApJL 908 L2
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- 2020
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43. Possible detection of a new cyclotron feature in 4U 1700-37
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Dipankar Bhattacharya, Suman Bala, and Jayashree Roy
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Physics ,High Energy Astrophysical Phenomena (astro-ph.HE) ,010308 nuclear & particles physics ,Astrophysics::High Energy Astrophysical Phenomena ,Cyclotron ,Binary number ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics ,Compact star ,01 natural sciences ,Spectral line ,Magnetic field ,law.invention ,Neutron star ,Space and Planetary Science ,law ,0103 physical sciences ,High mass ,Emission spectrum ,Astrophysics - High Energy Astrophysical Phenomena ,010303 astronomy & astrophysics - Abstract
We present a spectral and timing study of the High Mass X-ray Binary transient source 4U 1700-37 using NuSTAR and ASTROSAT/LAXPC. The source is observed in two different flux states. A combined spectral analysis of NuSTAR's FPMA and FPMB shows the possible hint of a cyclotron line feature at $\sim$16 keV. The line feature is consistently present in different continuum models with at least 3$\sigma$ confidence level. We do not detect the presence of a previously reported ~39 keV cyclotron line in the combined spectra. A $\sim$16 keV cyclotron feature would suggest that the compact object is a neutron star with a magnetic field strength $\sim2.1\times$10$^{12}$ Gauss in the emission region. We also find the presence of a rare Ni $K{\alpha}$ emission line around 7.6 keV in the NuSTAR spectrum. We searched the NuSTAR and ASTROSAT data for coherent or quasi-periodic oscillation signals but found no evidence in the frequency range 0.1 mHz to 10$^3$ Hz., Comment: Accepted for publication in MNRAS journal
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- 2020
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44. AstroSat Observations of the first Galactic ULX Pulsar Swift J0243.6+6124
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Philip A. Charles, Gaurava K. Jaisawal, Diego Altamirano, Sachindra Naik, Wynn C. G. Ho, Sudip Bhattacharyya, Kulinder Pal Singh, Dipankar Bhattacharya, Aru Beri, Harsha Raichur, Matthew J. Middleton, Chandreyee Maitra, Poshak Gandhi, and Gulab C. Dewangan
- Subjects
High Energy Astrophysical Phenomena (astro-ph.HE) ,Physics ,Swift ,010308 nuclear & particles physics ,Astrophysics::High Energy Astrophysical Phenomena ,individual (Swift J0243.6+6124) [Pulsars] ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics ,Astrophysics::Cosmology and Extragalactic Astrophysics ,01 natural sciences ,Pulsar ,Space and Planetary Science ,0103 physical sciences ,Astrophysics::Solar and Stellar Astrophysics ,binaries [X-rays] ,Astrophysics - High Energy Astrophysical Phenomena ,010303 astronomy & astrophysics ,computer ,Astrophysics::Galaxy Astrophysics ,computer.programming_language - Abstract
SwiftJ0243.6+6124, the first Galactic ultra-luminous X-ray pulsar, was observed during its 2017-2018 outburst with \emph{AstroSat} at both sub- and super-Eddington levels of accretionwith X-ray luminosities of $L_{X}{\sim}7{\times}10^{37}$ and $6{\times}10^{38}$$ergs^{-1}$, respectively.Our broadband timing and spectral observations show that X-ray pulsations at ${\sim}9.85\rm{s}$ have been detected up to 150keV when the source was accreting at the super-Eddington level.The pulse profiles are a strong function of both energy and source luminosity,showing a double-peaked profile with pulse fraction increasing from $\sim$$10{\%}$ at $1.65\rm{keV}$ to 40--80$\%$ at $70\rm{keV}$.The continuum X-ray spectra are well-modeled with a high energy cut-off power law($\Gamma$${\sim}$0.6-0.7) and one or two blackbody components with temperatures of $\sim$0.35$\rm{keV}$ and $1.2\rm{keV}$, depending on the accretion level.No iron line emission is observed at sub-Eddington level, while a broad emission feature at around 6.9keV is observed at the super-Eddington level, along with a blackbody radius($121-142\rm{km}$) that indicates the presence of optically thick outflows., Comment: 13 pages, accepted for publication in MNRAS
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- 2020
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45. Spectro-polarimetric analysis of prompt emission of GRB 160325A: jet with evolving environment of internal shocks
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Shabnam Iyyani, Varun Bhalerao, Vidushi Sharma, Santosh V. Vadawale, Tanmoy Chattopadhyay, and Dipankar Bhattacharya
- Subjects
First episode ,Physics ,High Energy Astrophysical Phenomena (astro-ph.HE) ,Photosphere ,010308 nuclear & particles physics ,Astrophysics::High Energy Astrophysical Phenomena ,Compton scattering ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics ,Astrophysics::Cosmology and Extragalactic Astrophysics ,01 natural sciences ,Redshift ,Afterglow ,Space and Planetary Science ,0103 physical sciences ,Poynting vector ,Astrophysics::Solar and Stellar Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena ,Gamma-ray burst ,010303 astronomy & astrophysics ,Astrophysics::Galaxy Astrophysics ,Fermi Gamma-ray Space Telescope - Abstract
GRB 160325A is the only bright burst detected by AstroSat CZT Imager in its primary field of view to date. In this work, we present the spectral and polarimetric analysis of the prompt emission of the burst using AstroSat, Fermi and Niel Gehrels Swift observations. The prompt emission consists of two distinct emission episodes separated by a few seconds of quiescent/ mild activity period. The first emission episode shows a thermal component as well as a low polarisation fraction of $PF < 37\, \%$ at $1.5\, \sigma$ confidence level. On the other hand, the second emission episode shows a non-thermal spectrum and is found to be highly polarised with $PF > 43\, \%$ at $1.5 \sigma$ confidence level. We also study the afterglow properties of the jet using {\it Swift}/XRT data. The observed jet break suggests that the jet is pointed towards the observer and has an opening angle of $1.2^{\circ}$ for an assumed redshift, $z = 2$. With composite modelling of polarisation, spectrum of the prompt emission and the afterglow, we infer that the first episode of emission originates from the photosphere with localised dissipation happening below it, and the second from the optically thin region above the photosphere. The photospheric emission is generated mainly by inverse Compton scattering, whereas the emission in the optically thin region is produced by the synchrotron process. The low radiation efficiency of the burst suggests that the outflow remains baryonic dominated throughout the burst duration with only a subdominant Poynting flux component, and the kinetic energy of the jet is likely dissipated via internal shocks which evolves from an optically thick to optically thin environment within the jet., Comment: 15 pages, 13 figures, accepted for publication in MNRAS
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- 2020
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46. Phase-resolved X-ray polarimetry of the Crab pulsar with the AstroSat CZT Imager
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A. R. Rao, Tanmoy Chattopadhyay, S. Sreekumar, P. K. Vinod, N. P. S. Mithun, S. Seetha, P. Priya, Gulab C. Dewangan, Essy Samuel, Avishek Basu, Varun Bhalerao, Bhal Chandra Joshi, Santosh V. Vadawale, Dipankar Bhattacharya, Ranjeev Misra, Biswajit Paul, and A. Vibhute
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LIGHT CURVES ,Physics ,Nebula ,POLARIZATION ,Crab Pulsar ,High-energy astronomy ,Astrophysics::High Energy Astrophysical Phenomena ,Astrophysics::Instrumentation and Methods for Astrophysics ,Polarimetry ,Astronomy ,Astronomy and Astrophysics ,Polarization (waves) ,01 natural sciences ,Electromagnetic radiation ,Neutron star ,Pulsar ,NEBULA ,0103 physical sciences ,RADIATION ,EMISSION ,010306 general physics ,010303 astronomy & astrophysics - Abstract
The Crab pulsar is a typical example of a young, rapidly spinning, strongly magnetized neutron star that generates broadband electromagnetic radiation by accelerating charged particles to near light speeds in its magnetosphere 1 . Details of this emission process so far remain poorly understood. Measurement of polarization in X-rays, particularly as a function of pulse phase, is thought to be a key element necessary to unravel the mystery of pulsar radiation2–4. Such measurements are extremely difficult, however: to date, Crab is the only pulsar to have been detected in polarized X-rays5–8 and the measurements have not been sensitive enough to adequately reveal the variation of polarization characteristics across the pulse 7 . Here, we present the most sensitive measurement to date of polarized hard X-ray emission from the Crab pulsar and nebula in the 100–380 keV band, using the Cadmium–Zinc–Telluride Imager 9 instrument on-board the Indian astronomy satellite AstroSat 10 . We confirm with high significance the earlier indication6,7 of a strongly polarized off-pulse emission. However, we also find a variation in polarization properties within the off-pulse region. In addition, our data hint at a swing of the polarization angle across the pulse peaks. This behaviour cannot be fully explained by the existing theoretical models of high-energy emission from pulsars.
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- 2017
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47. The first binary pulsars and what they told us about binary evolution
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Dipankar Bhattacharya
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Physics ,Pulsar ,Space and Planetary Science ,Astrophysics::High Energy Astrophysical Phenomena ,Binary number ,Astronomy and Astrophysics ,Astrophysics - Abstract
The first few binary pulsars revealed the richness of evolution possible in binary systems containing neutron stars. Products of different evolutionary routes, in high and low mass binaries, as well as examples of evolution affected by the pulsar wind were among the first ten objects discovered. This article presents a historical review of the impact of binary pulsars on the early development of ideas regarding the evolution of neutron stars in binary systems.
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- 2017
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48. Scanning sky monitor (SSM) onboard AstroSat
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Dhruti Ranjan Gaan, M. Ramakrishna Sharma, V. Chandra Babu, V. Girish, S. Seetha, A. K. Rajarajan, Anil Agarwal, Manoj Kumar, Brajpal Singh, Kumar, G. Nagesh, Pankaj Agarwal, B. N. Ashoka, Prashanth Kulshresta, N. Sitaramamurthy, R N Yadav, Dipankar Bhattacharya, Ravi Kulkarni, Nirmal Iyer, Mathew Sebastian, Anuj Nandi, Ankur Kushwaha, Kithiganahalli Narayanaswamy Balaji, Vivek Kumar Agarwal, B. T. Ravishankar, Anand Jain, G. Meena, M. C. Ramadevi, D. Radhika, and S. Vaishali
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Physics ,Large field of view ,X-ray transient ,010504 meteorology & atmospheric sciences ,business.industry ,Astrophysics::High Energy Astrophysical Phenomena ,media_common.quotation_subject ,Detector ,Astrophysics::Instrumentation and Methods for Astrophysics ,Proportional counter ,Astronomy and Astrophysics ,01 natural sciences ,Optics ,Space and Planetary Science ,Sky ,0103 physical sciences ,business ,010303 astronomy & astrophysics ,Rotation (mathematics) ,0105 earth and related environmental sciences ,media_common ,Remote sensing - Abstract
Scanning Sky Monitor (SSM) onboard AstroSat is an Xray sky monitor in the soft X-ray band designed with a large field of view to detect and locate transient X-ray sources and alert the astronomical community about interesting phenomena in the X-ray sky. SSM comprises position sensitive proportional counters with 1D coded mask for imaging. There are three detector units mounted on a platform capable of rotation which helps covering about 50% of the sky in one full rotation. This paper discusses the elaborate details of the instrument and few immediate results from the instrument after launch.
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- 2017
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49. Characterisation of Cosmic Ray Induced Noise Events in AstroSat-CZT Imager
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Ajay Ratheesh, A. R. Rao, S. Sreekumar, Santosh V. Vadawale, A. Vibhute, P. Pradeep, Debdutta Paul, Dipankar Bhattacharya, and N. P. S. Mithun
- Subjects
Physics ,Photon ,Physics::Instrumentation and Detectors ,Astrophysics::High Energy Astrophysical Phenomena ,Detector ,Astrophysics::Instrumentation and Methods for Astrophysics ,FOS: Physical sciences ,Astronomy and Astrophysics ,Cosmic ray ,Astrophysics ,Cadmium zinc telluride ,chemistry.chemical_compound ,Bunches ,chemistry ,Space and Planetary Science ,Gamma-ray burst ,Astrophysics - Instrumentation and Methods for Astrophysics ,Space vehicles: instruments—instrumentation: detectors—X-rays: detectors—X-rays: analysis ,Instrumentation and Methods for Astrophysics (astro-ph.IM) ,Event (particle physics) ,Noise (radio) - Abstract
The Cadmium Zinc Telluride (CZT) Imager onboard AstroSat, consists of pixelated CZT detectors, which are sensitive to hard X-rays above 20 keV. The individual pixels are triggered by ionising events occurring in them, and the detectors operate in a self-triggered mode, recording each event separately with information about its time of incidence, detector co-ordinates, and channel that scales with the amount of ionisation. The detectors are sensitive not only to photons from astrophysical sources of interest, but also prone to a number of other events like background X-rays, cosmic rays, and noise in detectors or the electronics. In this work a detailed analysis of the effect of cosmic rays on the detectors is made and it is found that cosmic rays can trigger multiple events which are closely packed in time (called 'bunches'). Higher energy cosmic rays, however, can also generate delayed emissions, a signature previously seen in the PICsIT detector on-board INTEGRAL. An algorithm to automatically detect them based on their spatial clustering properties is presented. Residual noise events are examined using examples of Gamma Ray Bursts as target sources., 16 pages, 12 figures
- Published
- 2019
50. Observed glitches in 8 young pulsars
- Author
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Rana Nandi, P. K. Manoharan, Debades Bandhopadhay, Avishek Basu, Bhal Chandra Joshi, Dipankar Bhattacharya, Prasanta Char, and M A Krishnakumar
- Subjects
Physics ,High Energy Astrophysical Phenomena (astro-ph.HE) ,Giant Metrewave Radio Telescope ,010308 nuclear & particles physics ,Crab Pulsar ,Astrophysics::High Energy Astrophysical Phenomena ,Astrophysics::Instrumentation and Methods for Astrophysics ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics ,Vela ,01 natural sciences ,Glitch ,Radio telescope ,Pulse period ,Pulsar ,Space and Planetary Science ,0103 physical sciences ,Astrophysics::Solar and Stellar Astrophysics ,Astrophysics - High Energy Astrophysical Phenomena ,010303 astronomy & astrophysics ,Relative amplitude - Abstract
The abrupt change in the pulse period of a pulsar is called a pulsar glitch. In this paper, we present eleven pulsar glitches detected using the Ooty Radio Telescope (ORT) and the upgraded Giant Metrewave Radio Telescope (uGMRT) in high cadence timing observations of 8 pulsars. The measured relative amplitude of glitches ($\Delta \nu/\nu$) from our data ranges from $10^{-6}$ to $10^{-9}$. Among these glitches, three are new discoveries, being reported for the first time. We also reanalyze the largest pulsar glitch in the Crab pulsar (PSR J0534+2200) by fitting the ORT data to a new phenomenological model including the slow rise in the post-glitch evolution. We measure an exponential recovery of 30 days after the Vela glitch detected on MJD 57734 with a healing factor $Q=5.8\times 10^{-3}$. Further, we report the largest glitch ($\Delta \nu/\nu = 3147.9 \times 10^{-9}$) so far in PSR J1731$-$4744., Comment: 11 pages, 12 figures, 3 tables; Accepted for publication in MNRAS
- Published
- 2019
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