1. Icotinib, Almonertinib, and Olmutinib: A 2D Similarity/Docking-Based Study to Predict the Potential Binding Modes and Interactions into EGFR
- Author
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Faisal A. Almalki, Ahmed M. Gouda, Ashraf N. Abdalla, and Ahmed M. Shawky
- Subjects
Indoles ,Stereochemistry ,olmutinib ,Pharmaceutical Science ,Egfr ligand ,Ligands ,Piperazines ,Article ,Analytical Chemistry ,almonertinib ,QD241-441 ,Similarity (network science) ,Crown Ethers ,icotinib ,Drug Discovery ,medicine ,Humans ,Osimertinib ,Physical and Theoretical Chemistry ,Protein Kinase Inhibitors ,Acrylamides ,Binding Sites ,Molecular Structure ,Chemistry ,Organic Chemistry ,similarity search ,ErbB Receptors ,Molecular Docking Simulation ,Pyrimidines ,Chemistry (miscellaneous) ,Docking (molecular) ,Icotinib ,docking ,Quinazolines ,Molecular Medicine ,Free energies ,Erlotinib ,medicine.drug - Abstract
In the current study, a 2D similarity/docking-based study was used to predict the potential binding modes of icotinib, almonertinib, and olmutinib into EGFR. The similarity search of icotinib, almonertinib, and olmutinib against a database of 154 EGFR ligands revealed the highest similarity scores with erlotinib (0.9333), osimertinib (0.9487), and WZ4003 (0.8421), respectively. In addition, the results of the docking study of the three drugs into EGFR revealed high binding free energies (ΔGb = −6.32 to −8.42 kcal/mol) compared to the co-crystallized ligands (ΔGb = −7.03 to −8.07 kcal/mol). Analysis of the top-scoring poses of the three drugs was done to identify their potential binding modes. The distances between Cys797 in EGFR and the Michael acceptor sites in almonertinib and olmutinib were determined. In conclusion, the results could provide insights into the potential binding characteristics of the three drugs into EGFR which could help in the design of new more potent analogs.
- Published
- 2021
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