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ObjectiveThe increasing demand for unraveling cellular heterogeneity has boosted single cell metabolomics studies. However, current analytical methods are usually labor-intensive and hampered by lack of accuracy and efficiency. Methods: we developed a first-ever automated single cell mass spectrometry system (named SCMS) that facilitated the metabolic profiling of single cells. In particular, extremely small droplets of sub nano-liter were generated to extract the single cells, and the underlying mechanism was verified theoretically and experimentally. This was crucial to minimize the dilution of the trace cellular contents and enhance the analytical sensitivity. Based on the precise 3D positioning of the pipette tip, we established a visual servoing robotic micromanipulation platform on which single cells were sequentially extracted, aspirated, and ionized, followed by the mass spectrometry analyses. Results: With the SCMS system, inter-operator variability was eliminated and working efficiency was improved. The performance of the SCMS system was validated by the experiments on bladder cancer cells. MS and MS2 analyses of single cells enable us to identify several cellular metabolites and the underlying inter-cell heterogeneity. Conclusion: In contrast to traditional methods, the SCMS system functions without human intervention and realizes a robust single cell metabolic analysis. Significance: the SCMS system upgrades the way how single cell metabolites were analyzed, and has the potential to be a powerful tool for single cell metabolomics studies.

In this study, we have developed a variable pressure operating hollow cathode discharge (HCD) ion source to investigate the gas phase ion-molecule reactions of nitroaromatic explosive compounds. The developed HCD ion source coupled MS system has also been validated as an analytical method to analyze explosives at trace levels. The ion source was designed in such a way that the plasma can be generated alternatively at high pressure (~30 Torr), medium pressure (~5 Torr) and low pressure (~1 Torr) regions. The plasma contains a sufficient amount of reactant ions, electrons and excited species, thus the gaseous analyte molecules were efficiently ionized when they passed through the plasma. In the ion-molecule reactions of the nitroaromatic explosives, the discharge products of NOx− (x = 2,3), O3 and HNO3 originating from the plasma-excited air were suggested to contribute to the formation of mostly [M − H]-, [M − NO]-, [M+NO3–HNO2]- and [M-NO+HNO3]- adduct ions at the higher ion source pressures (~5 and 28 Torr) while the electron rich plasma leads to the formation of molecular ion, M−•, at the lower ion source pressure (~1 Torr). Formation of the hydride-adduct ions of the nitroaromatic compounds reveals the surface-assisted Birch type reduction in the HCD plasma. The variety of spectral patterns in the air-assisted glow discharge would be useful for high through-put detection of TNT and TNT-related explosives. An ambient helium dielectric barrier discharge (DBD) ion source was also used and gave identical mass spectra of the nitroaromatic explosive compounds to those observed by the HCD ion source, but did not give any hydride-adduct ions of the explosive compounds. Ion formation mechanism of these ions is also discussed.