1. Molecular dynamics simulations and theoretical calculations of cyclodextrin-polydatin inclusion complexes
- Author
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Jian-Qiang Zhang, Li-Juan Yang, Yun-Hua Li, Zhao Shuyue, Liu Xingyuan, Li Xueling, Chen Mei, and Li Yonggen
- Subjects
chemistry.chemical_classification ,Work (thermodynamics) ,Cyclodextrin ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Thermodynamics ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Gibbs free energy ,Inorganic Chemistry ,symbols.namesake ,Molecular dynamics ,symbols ,Inclusion (mineral) ,Spectroscopy - Abstract
In our previous work, the PD/γ-cyclodextrin complex was discovered to have higher calculated Kc and Gibbs free energy (ΔG0) values by the phase-solubility diagram method, and molecular dynamics (MD) simulations were carried out to investigate the structure and dynamics of the 1:1 inclusion complexes formed by β- and γ-cyclodextrins (CD) with PD in water. The simulation results indicated that γ-CD provides the most stable inclusion complex of among all PD-CD complexes in this study. Similar to the MD results, the thermodynamics of the selected inclusion complex structure was calculated by semi-empirical (PM3) and DFT (B3LYP/6-31G) methods. The statistical thermodynamics calculations also suggested that orientation b (including in CD's cavity from the wide side) of the PD/γ-CD inclusion complex is a favourable binding mode and in good agreement with the experimental and MD data. Most importantly, the simulation results of present study are in good agreement with the experimental data.
- Published
- 2021