1. Methyl Side-Chain Dynamics in Proteins Using Selective Enrichment with a Single Isotopomer
- Author
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Kothandaraman Seshadri, Shih-Yang Hsieh, John B. C. Findlay, Jenny Hong Murray, Arnout P. Kalverda, Lynnette C Bae, Rui Zhang, Michael M Chaykovski, Kenneth E Tortolani, Steve W. Homans, Jonathan Miles Brown, and Minn-Chang Cheng
- Subjects
chemistry.chemical_classification ,Carbon Isotopes ,Protein Conformation ,Stereochemistry ,Chemistry ,Relaxation (NMR) ,Carbon-13 ,Proteins ,Valine ,General Chemistry ,Deuterium ,Biochemistry ,Chemical synthesis ,Catalysis ,Isotopomers ,Amino acid ,Mice ,Colloid and Surface Chemistry ,Protein structure ,Side chain ,Animals ,Nuclear Magnetic Resonance, Biomolecular - Abstract
13C relaxation studies on side-chain methyl groups in proteins typically involve measurements on (13)CHD(2) isotopomers, where the (13)C relaxation mechanism is particularly straightforward in the presence of a single proton. While such isotopomers can be obtained in proteins overexpressed in bacteria by use of (13)C enriched and fractionally deuterated media, invariably all possible (2)H isotopomers are obtained. This results in a loss of both resolution and sensitivity, which becomes particularly severe for larger proteins. We describe an approach that overcomes this problem by chemical synthesis of amino acids containing a pure (13)CHD(2) isotopomer. We illustrate the benefits of this approach in (13)C side-chain relaxation measurements on the mouse major urinary protein selectively enriched with [gamma(1),gamma(2)-(13)C(2),alpha,beta,gamma(1),gamma(1),gamma(2),gamma(2)-(2)H(6)] valine. Relaxation measurements in the absence and presence of pyrazine-derived ligands suggest that valine side-chain dynamics do not contribute significantly to binding entropy.
- Published
- 2003
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