17 results on '"Mohapatra, T."'
Search Results
2. Assessment of effectiveness of trainings conducted by ICAR
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Was, A. K., Jain, N. K., Singh, P., Satyapriya, Pau, S., Kumar, H. H. V., Mrinmoy Ray, and Mohapatra, T.
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Agronomy and Crop Science - Abstract
Training is essential not only to increase productivity, but also to keep workers of an organization motivated and inspired. In this study, the effectiveness of trainings conducted by Indian Council of Agricultural Research (ICAR) during 2017-18 in which 901 Scientists, 506 Technical, 519 Administrative and 313 Skilled Support Staff (SSS) from 106 ICAR-Institutes across 26 States/UTs participated was assessed by HRM Unit, ICAR HQs, New Delhi during 2018-19. Study revealed that the pooled perceived training effectiveness index (PTEI) was 3.86, referring medium effectiveness of trainings. The mean PTEI score was the highest for SSS (3.94) followed by Administrative staff (3.90). Overall, most of the participants (58.83%) reported medium degree of effectiveness of the training programmes. Behavioural changes and changes in practices as a consequence of exposure to the trainings are evident from the findings. The study revealed that perceived effectiveness was significantly associated with age, gender and duration of training programmes. Some observed constraints by the trainees were inadequate infrastructure at Institutes, sometimes lesser relevancy of few topics and lack of practical exposure. The major suggestions were inclusion of more practical sessions, follow up programmes for trainee-trainer meet, and increasing the duration of the trainings in few cases. The trainings organised by ICAR should continue for all staff categories to bring about desirable changes in competencies.
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- 2020
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- View/download PDF
3. PRUNE is crucial for normal brain development and mutated in microcephaly with neurodevelopmental impairment
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Zollo, M, Ahmed, M, Ferrucci, V, Salpietro, V, Asadzadeh, F, Carotenuto, M, Maroofian, R, Al-Amri, A, Singh, R, Scognamiglio, I, Mojarrad, M, Musella, L, Duilio, A, Di Somma, A, Karaca, E, Rajab, A, Al-Khayat, A, Mohan Mohapatra, T, Eslahi, A, Ashrafzadeh, F, Rawlins, LE, Prasad, R, Gupta, R, Kumari, P, Srivastava, M, Cozzolino, F, Kumar Rai, S, Monti, M, Harlalka, GV, Simpson, MA, Rich, P, Al-Salmi, F, Patton, MA, Chioza, BA, Efthymiou, S, Granata, F, Di Rosa, G, Wiethoff, S, Borgione, E, Scuderi, C, Mankad, K, Hanna, MG, Pucci, P, Houlden, H, Lupski, JR, Crosby, AH, Baple, EL, Zollo, Massimo, Ahmed, M., Ferrucci, Veronica, Salpietro, V., Asadzadeh, F., Carotenuto, Marianeve, Maroofian, R., Al Amri, A., Singh, R., Scognamiglio, I., Mojarrad, M., Musella, L., Duilio, Angela, Di Somma, Angela, Karaca, E., Rajab, A., Al Khayat, A., Mohapatra, T. M., Eslahi, A., Ashrafzadeh, F., Rawlins, L. E., Prasad, R., Gupta, R., Kumari, P., Srivastava, M, Cozzolino, Flora, Rai, S. K., Monti, Maria, Harlalka, G. V., Simpson, M. A., Rich, P., Al Salmi, F., Patton, M. A., Chioza, B. A., Efthymiou, S., Granata, F., Di Rosa, G., Wiethoff, S., Borgione, E., Scuderi, C., Mankad, K., Hanna, M. G., Pucci, Pietro, Houlden, H., Lupski, J. R., Crosby, A. H., and Baple, E. L.
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Male ,Adolescent ,Developmental delay ,Developmental Disabilities ,Nervous System ,Microtubules ,Normal brain development ,Young Adult ,Cell Movement ,Recessive ,Humans ,microcephaly ,Child ,Preschool ,Cytoskeleton ,Cerebral Cortex ,normal brain development ,fungi ,Brain ,Infant ,Cell Differentiation ,Original Articles ,Microtubule polymerization ,PRUNE1, developmental delay, microcephaly, microtubule polymerization, tubulinopathy, normal brain development ,Microcephaly ,PRUNE1 ,Tubulinopathy ,Carrier Proteins ,Child, Preschool ,Female ,Genes, Recessive ,Heredodegenerative Disorders, Nervous System ,Mutation ,Pedigree ,microtubule polymerization, tubulinopathy ,developmental delay ,Genes ,nervous system ,Heredodegenerative Disorders - Abstract
Zollo et al. report that mutations in PRUNE1, a phosphoesterase superfamily molecule, underlie primary microcephaly and profound global developmental delay in four unrelated families from Oman, India, Iran and Italy. The study highlights a potential role for prune during microtubule polymerization, suggesting that prune syndrome may be a tubulinopathy., PRUNE is a member of the DHH (Asp-His-His) phosphoesterase protein superfamily of molecules important for cell motility, and implicated in cancer progression. Here we investigated multiple families from Oman, India, Iran and Italy with individuals affected by a new autosomal recessive neurodevelopmental and degenerative disorder in which the cardinal features include primary microcephaly and profound global developmental delay. Our genetic studies identified biallelic mutations of PRUNE1 as responsible. Our functional assays of disease-associated variant alleles revealed impaired microtubule polymerization, as well as cell migration and proliferation properties, of mutant PRUNE. Additionally, our studies also highlight a potential new role for PRUNE during microtubule polymerization, which is essential for the cytoskeletal rearrangements that occur during cellular division and proliferation. Together these studies define PRUNE as a molecule fundamental for normal human cortical development and define cellular and clinical consequences associated with PRUNE mutation.
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- 2017
- Full Text
- View/download PDF
4. In-vitro response of Vigna aconitifolia to drought stress induced by PEG - 6000
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Soni, Priyanka, Rizwan, M., Bhatt, K., Mohapatra, T., and Singh, Govind
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lcsh:Biochemistry ,drought tolerance ,food and beverages ,Vigna aconitifolia ,lcsh:QD415-436 ,Water deficit - Abstract
This investigation was aimed at investigating effect of low water potential generated by PEG on growth, sugar content and stress related enzymes (catalase, GPOX) at seedling level. Additionally gene expression was also studied using SDS-PAGE. A total of twelve moth bean genotypes comprising of elite moth bean lines were evaluated for desiccation tolerance at germination and seedling stage. Germination was happened differentially at 8% PEG while 15% PEG induced wilting in 7d old seedlings. Longer roots and shoots, higher dry weight of root and shoots both in control and treated seedlings was observed with desiccation tolerance. Drought tolerant and sensitive varieties differed in their protein profiling with newer genes showing their expression in tolerant once. Two genes were found up regulated in all tolerant varieties during PEG induced stress. Higher basal activity of enzymes (GPOX and catalase) and total soluble sugar during water deficit in drought tolerant varieties was reported.
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- 2011
5. Anthelmintic Activity of Rhizomes of Nymphaea rubra Linn
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Behera, S. K., Mohapatra, T. K., and Dash, Vikash
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lipids (amino acids, peptides, and proteins) ,Original Article ,complex mixtures - Abstract
The Anthelmintic activity of petroleum ether, methanol and chloroform extract of rhizomes of Nymphaea rubra Linn were evaluated separately and the activities were compared with that of Albendazole. The petroleum ether, ethanol and chloroform extract exhibited dose dependent activity. The ethanolic extract showed remarkable Anthelmintic activity.
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- 2010
6. Observations on Carbapenem Resistance by Minimum Inhibitory Concentration in Nosocomial Isolates of Acinetobacter species: An Experience at a Tertiary Care Hospital in North India
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Gaur, A., Garg, A., Pradyot Prakash, Anupurba, S., and Mohapatra, T. M.
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Acinetobacter baumannii ,Cross-infections ,Cross Infection ,Acinetobacter ,Dose-Response Relationship, Drug ,Antibiotic resistance ,Colony Count, Microbial ,Drug resistance, Microbial ,India ,Meropenem ,Microbial Sensitivity Tests ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,Original Papers ,Treatment Outcome ,Carbapenems ,Drug Resistance, Multiple, Bacterial ,Drug Resistance, Bacterial ,polycyclic compounds ,Carbapenem ,Acinetobacter Infections - Abstract
Acinetobacter species are emerging as an important nosocomial pathogen. Multidrug-resistant Acinetobacter spp. has limited the option for effective treatment. Although carbapenems are effective for the treatment of such infections, resistance to this drug has recently been reported. This study was undertaken to assess resistance to carbapenem in clinical isolates of Acinetobacter spp. from hospitalized patients by both disc-diffusion and minimum inhibitory concentration (MIC) methods. All clinical samples from suspected cases of nosocomial infections were processed, and 265 isolates were identified as Acinetobacter species. These isolates were tested for antibiotic resistance by the disc-diffusion method with 14 antimicrobials, including meropenem and imipenem. Thereafter, all Acinetobacter species were subjected to MIC for meropenem. More than 80% resistance to second- and third-generation cephalosporins, aminoglycosides, and quinolones was recorded. Thirty percent of the strains were resistant to cefoperazone/sulbactam. Resistance to meropenem was observed in 6.4% of Acinetobacter spp. while 8.3% of the isolates showed intermediate resistance detected by MIC. All carbapenem-resistant/intermediate strains were also resistant to other (>10) antibiotics tested by the disc-diffusion method. The rising trend of resistance to carbapenem poses an alarming threat to the treatment for such infections. Regular monitoring, judicious prescription, and early detection of resistance to carbapenem are necessary to check further dissemination of drug resistance in Acinetobacter spp.
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- 2008
7. Immunogenicity of Entamoeba histolytica Crude and Fractionated Antigens in Animal Model
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Mohapatra T. M and Arianpour N
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Crude Amoebic antigen ,Entamoeba histolytica ,Fractionated Amoebicantigens ,lcsh:R ,lcsh:Medicine ,lcsh:Q ,protection ,Guinea pig ,lcsh:Science - Abstract
Introduction: The immunogenicity of crude amoebic antigen and its fractions preparedfrom Entamoeba histolytica (NIH:200) was evaluated in experimental animals. Material and Methods: Forty two guinea pigs of either sex free from Entamoebainfection and aged around 3 to 4 weeks were randomly divided into 5 groups. The treatedgroups consisted of 8, 10, 6, and 8 animals and 10 animals served as controls. Crude amoebicextract and its chromatographed fractions were used to immunize the treated animals. All theanimals were assessed for immunity status, challenged with Entamoeba trophozoites andsubsequently examined for lesions of the caecum and liver. Results: Of the 8 animals immunized with crude antigen, one had liver abscess and 5 hadcaecal lesions. None of the 10 animals immunized with fraction I (FI) had hepatic lesions and one had caecal lesions. Both caecal and hepatic lesions were observed in animals immunizedwith FII & FIII. Conclusion: Results show that vaccination with the F1 fraction of Entamoeba histolyticaprovided up to 90% protection against infection. The other fractions and the crude extractprovided less protection.
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- 2004
8. Superiority of dat over elisa as a diagnostic and seroepidemiological tool for the diagnosis of Indian kala-azar
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Goyal R and Mohapatra T
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Serodiagnosis ,Kala-azar ,mental disorders ,parasitic diseases ,lcsh:QR1-502 ,ELISA ,DAT ,lcsh:Microbiology - Abstract
The aim of this study was to evaluate two methods for the diagnosis of Kala-azar. The sera of 160 individuals were evaluated by ELISA using soluble antigen and direct agglutination test (DAT) for Kala-azar. These were categorized as 100 cases of clinically and parasitologically confirmed Kala-azar and 60 controls. The controls included clinically suspected but parasitologically not confirmed Kala-azar patients (10), endemic normals (15), non-endemic normals (19), typhoid fever (10) and malaria (15). The positivity rate amongst the clinically and parasitologically confirmed Kala-azar patients by ELISA and DAT were 93% and 98% respectively. Out of 10 clinically suspected Kala-azar cases three showed positive reaction in ELISA and two in DAT. Of the endemic normals, one case was found positive by both the tests whereas ELISA was found positive in one additional case. DAT did not show any cross reactivity with malaria while ELISA was found positive in one case. Both endemic normals and typhoid fever cases showed no reaction by both tests. ELISA showed a sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) of 93%, 90%, 93% and 90% respectively while for DAT these values were 98%, 95%, 98 and 95% respectively. The diagnostic accuracy for ELISA and DAT was found to be 91.9% and 96.9%, respectively. The present study shows that DAT is a simple, sensitive, specific and cost effective test with high PPV and NPV along with approximately 97% diagnostic accuracy and is comparable to ELISA. It may be applied for the routine diagnosis as well as seroepidemiological study of Kala-azar.
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- 2004
9. Malignant Struma Ovarii: Case Report and a Review of the Literature
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Okere, PCN, Olusina, DB, Mohapatra, T, and Bal, C
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Malignant Struma Ovarii, Ovarian Teratoma, Papillary Thyroid Carcinoma - Abstract
Struma ovarii is a rare tumor. Malignant change in this tumour is even rarer. While clinical presentation is protean, a preoperative diagnosis is equally difficult. Diagnosis is confirmed by histology. Treatment ofmalignant struma ovarii is by surgical resection of the tumor or total abdominal hysterectomy and bilateral salpingo-oophorectomy. A total thyroidectomy allows radioactive iodine ablation and the use of thyroglobulin as marker to monitor recurrence. However due to rarity of the disease, standard treatment is still controversial. We present a case of malignant struma ovarii, followed up for five years after treatment, and a review of the literature on the disease. The patient was treated with surgery and radiation. She is still free of disease after 5 years.Key Words: Malignant Struma Ovarii, Ovarian Teratoma, Papillary Thyroid Carcinoma
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- 2013
10. Prevalence of methicillin resistant staphylococcus aureus in a tertiary referral hospital in eastern Uttar Pradesh
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Anupurba S, Sen M, Nath G, Sharma B, Gulati A, and Mohapatra T
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multidrug resistance ,lcsh:QR1-502 ,MRSA ,hospital infection ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,lcsh:Microbiology - Abstract
We report the prevalence of methicillin resistant Staphylococcus aureus (MRSA) infections and their antibiotic susceptibility pattern in our hospital located in eastern Uttar Pradesh. Out of total 549 strains of Staphylococcus aureus isolated from different clinical specimens 301 (54.85%) were found to be methicillin resistant. More than 80% of MRSA were found to be resistant to penicillin, cotrimoxazole, ciprofloxacin, gentamicin, erythromycin, tetracycline, 60.5% to amikacin and 47.5% to netilmicin. However, no strains were resistant to vancomycin. Many MRSA strains (32.0%) were multi-drug resistant. To reduce the prevalence of MRSA, the regular surveillance of hospital associated infection, monitoring of antibiotic sensitivity pattern and formulation of definite antibiotic policy may be helpful.
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- 2003
11. Glucagon augmented Tc99m-pertechnetate scintigraphy for detection of ectopic gastric mucosa in Meckel′s diverticulum
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Kumar R, Mohapatra T, Shamim S, Pathak M, Agarwala S, and Bhatnagar V
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lcsh:RJ1-570 ,lcsh:Surgery ,lcsh:Pediatrics ,lcsh:RD1-811 - Published
- 2005
12. Marker assisted selection for biotic stress resistance in wheat and rice
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Prabhu, K. V., Singh, A. K., Basavaraj, S. H., Cherukuri, D. P., Charpe, A., Krishnan, S. G., Gupta, S. K., Joseph, M., Koul, S., Mohapatra, T., Pallavi, J. K., Davood Samsampour, Singh, A., Singh, V. K., and Singh, V. P.
13. Marker assisted selection: A paradigm shift in Basmati breeding
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Singh, A. K., Gopalakrishnan, S., Singh, V. P., Prabhu, K. V., Mohapatra, T., Singh, N. K., Sharma, T. R., Nagarajan, M., K K VINOD, Singh, D., Singh, U. D., Chander, S., Atwal, S. S., Seth, R., Singh, V. K., Ellur, R. K., Singh, A., Anand, D., Khanna, A., Yadav, S., Goel, N., Shikari, A. B., and Marathi, B.
14. Erratum: Assessment of genetic diversity in 31 species of mangroves and their associates through RAPD and AFLP markers (Zeitschrift fur Naturforschung - Section C Journal of Biosciences (2006) 61c (413-420))
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Mukherjee, A. K., Acharya, L., PRATAP PANDA, Mohapatra, T., and Das, P.
15. Rapid and efficient Agrobacterium mediated transformation of early scutellum derived calli of indica rice
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Venkat Raman, K., Aggarwal, D., Raghavendra Rao, S., Rohini Sreevathsa, Singh, A. K., Abdin, M. Z., Mohapatra, T., and Pattanayak, D.
16. Erratum: Draft genome sequence of the extremely halophilic bacterium halomonas salina strain CIFRI1, isolated from the east coast of India [Genome Announcements. 3, 1, (2015) (e01321)] DOI:10.1128/genomeA.01321-14
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Behera, B. K., Das, P., Jitendra Maharana, Paria, P., Mandal, S. N., Meena, D. K., Sharma, A. P., Jayarajan, R., Dixit, V., Verma, A., Vellarikkal, S. K., Scaria, V., Sivasubbu, S., Rao, A. R., and Mohapatra, T.
17. A snapshot of the emerging tomato genome sequence
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Sandra Knapp, Ying Wang, Antonio Granell, Dongyu Qu, Erika Asamizu, Pierre Frasse, Hongling Jiang, Mohamed Zouine, Pradeep Kumar Singh, Vivek Dalal, Luigi Frusciante, Robert M. Buels, Hans de Jong, Dongyuan Liu, James J. Giovannoni, Sander Peters, Sarita, Satoshi Tabata, Isaak Y. Tecle, Mara Ercolano, Jun Wang, Longfei Liu, Rekha Dixit, Heiko Schoof, Yongbiao Xue, Kishor Gaikwad, Julia Vrebalov, Alessandra Traini, Nunzio D’Agostino, Ruth White, Zhibiao Ye, Amparo Mico, Cheol-Goo Hur, Jitendra P. Khurana, Roderic Guigó, Arun Sharma, Paramjit Khurana, Jiuhai Zhao, Hiroyuki Fukuoka, Byung-Dong Kim, Smriti Shridhar, René Klein Lankhorst, Yuanyuan Dai, Dani Zamir, Sumera Praveen, Helen Beasley, Manuel Spannagl, Erwin Datema, Klaus X.F. Mayer, Yves Van de Peer, Akhilesh K. Tyagi, Aureliano Bombarely, P. Lindhout, Mark Fiers, Silvana Grandillo, Jane Rogers, Zhangjun Fei, Changbao Li, Giorgio Valle, Karen McLaren, Alok Singh, Sung-Hwan Jo, Sarah Butcher, Willem J. Stiekema, Murielle Philippot, Huajie Fan, Glenn J. Bryan, Fei Lu, Doil Choi, Jun He, Daniel W. A. Buchan, Stephane Rombauts, Jinfeng Chen, Yongchen Du, Xiao-Hua Yang, Shailendra Vyas, Daisuke Shibata, Maria Luisa Chiusano, Rajesh Kumar, Song Bin Chang, Marjo J. van Staveren, Gerard J. Bishop, Victoria Fernandez-Pedrosa, Hong-Qing Ling, Graham B. Seymour, Lukas A. Mueller, Mondher Bouzayen, Stephen M. Stack, Rémy Bruggmann, Ajay Kumar, Zhonghua Zhang, Christine Nicholson, Guoping Wang, Saloni Mathur, Sean Humphray, Vikrant Gupta, Jinfeng Shi, Roeland C. H. J. van Ham, Debasis Chattopadhyay, Amolkumar U. Solanke, Mingsheng Chen, Shusei Sato, Sanwen Huang, Sonia Osorio, Chen Lu, Zhukuan Cheng, Tilak Raj Sharma, Dóra Szinay, James Abbott, Awadhesh Pandit, Yu Geng, Mahavir Yadav, Sara Todesco, Manuel Pérez-Alonso, Giovanni Giuliano, Amalia Barone, Trilochan Mohapatra, Irfan Ahmad Ghazi, Wencai Yang, Francisco Camara, Giulia Falcone, Anika Jöcker, Clare Riddle, Alessandro Vezzi, Jianjun Chen, Shouhong Sun, Marco Pietrella, Joyce Van Eck, Lindsay A. Shearer, Adri A. Mills, Steven D. Tanksley, Miguel A. Botella, Chuanyou Li, Sarah Sims, Farid Regad, Jeffrey A. Fawcett, Parul Chowdhury, Naama Menda, Suzanne M. Royer, Nagendra K. Singh, Mueller, L. A., Lankhorst, R. K., Tanksley, S. D., Giovannoni, J. J., White, R., Vrebalov, J., Fei, Z., van Eck, J., Buels, R., Mills, A. A., Menda, N., Tecle, I. Y., Bombarely, A., Stack, S., Royer, S. M., Chang, S. B., Shearer, L. A., Kim, B. D., Jo, S. H., Hur, C. G., Choi, D., Li, C. B., Zhao, J., Jiang, H., Geng, Y., Dai, Y., Fan, H., Chen, J., Lu, F., Shi, J., Sun, S., Yang, X., Lu, C., Chen, M., Cheng, Z., Li, C., Ling, H., Xue, Y., Wang, Y., Seymour, G. B., Bishop, G. J., Bryan, G., Rogers, J., Sims, S., Butcher, S., Buchan, D., Abbott, J., Beasley, H., Nicholson, C., Riddle, C., Humphray, S., Mclaren, K., Mathur, S., Vyas, S., Solanke, A. U., Kumar, R., Gupta, V., Sharma, A. K., Khurana, P., Khurana, J. P., Tyagi, A., Sarita, Chowdhury, P., Shridhar, S., Chattopadhyay, D., Pandit, A., Singh, P., Kumar, A., Dixit, R., Singh, A., Praveen, S., Dalal, V., Yadav, M., Ghazi, I. A., Gaikwad, K., Sharma, T. R., Mohapatra, T., Singh, N. K., Szinay, D., de Jong, H., Peters, S., van Staveren, M., Datema, E., Fiers, M. W. E. J., van Ham, R. C. H. J., Lindhout, P., Philippot, M., Frasse, P., Regad, F., Zouine, M., Bouzayen, M., Asamizu, E., Sato, S., Fukuoka, H., Tabata, S., Shibata, D., Botella, M. A., Perez Alonso, M., Fernandez Pedrosa, V., Osorio, S., Mico, A., Granell, A., Zhang, Z., He, J., Huang, S., Du, Y., Qu, D., Liu, L., Liu, D., Wang, J., Ye, Z., Yang, W., Wang, G., Vezzi, A., Todesco, S., Valle, G., Falcone, G., Pietrella, M., Giuliano, G., Grandillo, S., Traini, A., D'Agostino, Nunzio, Chiusano, MARIA LUISA, Ercolano, MARIA RAFFAELLA, Barone, Amalia, Frusciante, Luigi, Schoof, H., Jöcker, A., Bruggmann, R., Spannagl, M., Mayer, K. X. F., Guigó, R., Camara, F., Rombauts, S., Fawcett, J. A., Van de Peer, Y., Knapp, S., Zamir, D., and Stiekema, W.
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0106 biological sciences ,lcsh:QH426-470 ,Bioinformatics ,Genomics ,Plant Science ,Computational biology ,lcsh:Plant culture ,Biology ,Laboratorium voor Erfelijkheidsleer ,ENCODE ,01 natural sciences ,Genome ,03 medical and health sciences ,Laboratorium voor Plantenveredeling ,Bioinformatica ,Genetics ,Life Science ,lcsh:SB1-1110 ,030304 developmental biology ,Whole genome sequencing ,0303 health sciences ,Bacterial artificial chromosome ,EPS-4 ,fungi ,food and beverages ,Biology and Life Sciences ,Genome project ,PRI Bioscience ,lcsh:Genetics ,Plant Breeding ,GenBank ,Laboratory of Genetics ,Agronomy and Crop Science ,010606 plant biology & botany ,Reference genome - Abstract
The genome of tomato (Solanum lycopersicum L.) is being sequenced by an international consortium of 10 countries (Korea, China, the United Kingdom, India, the Netherlands, France, Japan, Spain, Italy, and the United States) as part of the larger “International Solanaceae Genome Project (SOL): Systems Approach to Diversity and Adaptation” initiative. The tomato genome sequencing project uses an ordered bacterial artificial chromosome (BAC) approach to generate a high-quality tomato euchromatic genome sequence for use as a reference genome for the Solanaceae and euasterids. Sequence is deposited at GenBank and at the SOL Genomics Network (SGN). Currently, there are around 1000 BACs finished or in progress, representing more than a third of the projected euchromatic portion of the genome. An annotation effort is also underway by the International Tomato Annotation Group. The expected number of genes in the euchromatin is ∼40,000, based on an estimate from a preliminary annotation of 11% of finished sequence. Here, we present this first snapshot of the emerging tomato genome and its annotation, a short comparison with potato (Solanum tuberosum L.) sequence data, and the tools available for the researchers to exploit this new resource are also presented. In the future, whole-genome shotgun techniques will be combined with the BAC-by-BAC approach to cover the entire tomato genome. The high-quality reference euchromatic tomato sequence is expected to be near completion by 2010.
- Published
- 2009
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