100 results on '"Mubeen Khan"'
Search Results
2. Cardiac Metastasis After Curative Treatment of Hepatocellular Carcinoma: Risk Factors, Treatment Options, and Prognosis
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Gaurav Jain, Mathew Otto, Mubeen Khan Mohammed Abdul, Manpreet Chadha, and Ajay Sahajpal
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General Medicine - Published
- 2022
3. S1201 Epidemiological Data and Anti-Microbial Resistance of Nosocomial Spontaneous Bacterial Peritonitis: A Systematic Review and Meta-Analysis
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Mubeen Khan Mohammed Abdul, Karim Osman, Joseph M. Cappuccio, Carol Spencer, and Satheesh P. Nair
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Hepatology ,Gastroenterology - Published
- 2022
4. ABCA4 c.859-25A>G, a Frequent Palestinian Founder Mutation Affecting the Intron 7 Branchpoint, Is Associated With Early-Onset Stargardt Disease
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Zelia Corradi, Manar Salameh, Mubeen Khan, Elise Héon, Ketan Mishra, Rebekkah J. Hitti-Malin, Yahya AlSwaiti, Alice Aslanian, Eyal Banin, Brian P. Brooks, Wadih M. Zein, Robert B. Hufnagel, Susanne Roosing, Claire‐Marie Dhaenens, Dror Sharon, Frans P. M. Cremers, and Alaa AlTalbishi
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Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Mutation ,Humans ,Stargardt Disease ,ATP-Binding Cassette Transporters ,Cone-Rod Dystrophies ,Introns ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,Arabs ,Pedigree - Abstract
Contains fulltext : 251966.pdf (Publisher’s version ) (Open Access) PURPOSE: The effect of noncoding variants is often unknown in the absence of functional assays. Here, we characterized an ABCA4 intron 7 variant, c.859-25A>G, identified in Palestinian probands with Stargardt disease (STGD) or cone-rod dystrophy (CRD). We investigated the effect of this variant on the ABCA4 mRNA and retinal phenotype, and its prevalence in Palestine. METHODS: The ABCA4 gene was sequenced completely or partially in 1998 cases with STGD or CRD. The effect of c.859-25A>G on splicing was investigated in silico using SpliceAI and in vitro using splice assays. Homozygosity mapping was performed for 16 affected individuals homozygous for c.859-25A>G. The clinical phenotype was assessed using functional and structural analyses including visual acuity, full-field electroretinography, and multimodal imaging. RESULTS: The smMIPs-based ABCA4 sequencing revealed c.859-25A>G in 10 Palestinian probands from Hebron and Jerusalem. SpliceAI predicted a significant effect of this putative branchpoint-inactivating variant on the nearby intron 7 splice acceptor site. Splice assays revealed exon 8 skipping and two partial inclusions of intron 7, each having a deleterious effect. Additional genotyping revealed another 46 affected homozygous or compound heterozygous individuals carrying variant c.859-25A>G. Homozygotes shared a genomic segment of 59.6 to 87.9 kb and showed severe retinal defects on ophthalmoscopic evaluation. CONCLUSIONS: The ABCA4 variant c.859-25A>G disrupts a predicted branchpoint, resulting in protein truncation because of different splice defects, and is associated with early-onset STGD1 when present in homozygosity. This variant was found in 25/525 Palestinian inherited retinal dystrophy probands, representing one of the most frequent inherited retinal disease-causing variants in West-Bank Palestine.
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- 2022
5. Using single molecule Molecular Inversion Probes as a cost-effective, high-throughput sequencing approach to target all genes and loci associated with macular diseases
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Rebekkah J, Hitti-Malin, Claire-Marie, Dhaenens, Daan M, Panneman, Zelia, Corradi, Mubeen, Khan, Anneke I, den Hollander, G Jane, Farrar, Christian, Gilissen, Alexander, Hoischen, Maartje, van de Vorst, Femke, Bults, Erica G M, Boonen, Patrick, Saunders, Susanne, Roosing, and Frans P M, Cremers
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Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Genetics ,lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4] ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Genetics (clinical) ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] - Abstract
Contains fulltext : 286869.pdf (Publisher’s version ) (Closed access) Macular degenerations (MDs) are a subgroup of retinal disorders characterized by central vision loss. Knowledge is still lacking on the extent of genetic and nongenetic factors influencing inherited MD (iMD) and age-related MD (AMD) expression. Single molecule Molecular Inversion Probes (smMIPs) have proven effective in sequencing the ABCA4 gene in patients with Stargardt disease to identify associated coding and noncoding variation, however many MD patients still remain genetically unexplained. We hypothesized that the missing heritability of MDs may be revealed by smMIPs-based sequencing of all MD-associated genes and risk factors. Using 17,394 smMIPs, we sequenced the coding regions of 105 iMD and AMD-associated genes and noncoding or regulatory loci, known pseudo-exons, and the mitochondrial genome in two test cohorts that were previously screened for variants in ABCA4. Following detailed sequencing analysis of 110 probands, a diagnostic yield of 38% was observed. This established an ''MD-smMIPs panel," enabling a genotype-first approach in a high-throughput and cost-effective manner, whilst achieving uniform and high coverage across targets. Further analysis will identify known and novel variants in MD-associated genes to offer an accurate clinical diagnosis to patients. Furthermore, this will reveal new genetic associations for MD and potential genetic overlaps between iMD and AMD.
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- 2022
6. Worse Outcomes Associated With Liver Transplants: An Increasing Trend
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Nabeel A Siddiqui, Omar Q Khan, Sanjay Bhandari, Summaya F Khan, Uzma Ullah, Javeryah R Shaikh, Mubeen Khan Mohammed Abdul, and Nayaab Ullah
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Alcoholic liver disease ,medicine.medical_specialty ,Transplantation ,Cirrhosis ,liver transplantation ,business.industry ,end-stage liver disease ,medicine.medical_treatment ,Mortality rate ,cirrhosis ,General Engineering ,Gastroenterology ,Hepatitis C ,Liver transplantation ,medicine.disease ,Lower risk ,mortality ,national inpatient sample database ,Liver disease ,Internal medicine ,Internal Medicine ,Medicine ,Steatohepatitis ,business - Abstract
Background and aim Since individuals in the early stages of liver cirrhosis are typically asymptomatic, the prevalence of liver cirrhosis may be underestimated. Liver cirrhosis has a significant morbidity and mortality rate, with 1.03 million deaths worldwide each year. For end-stage liver disease, liver transplantation is a potential therapeutic option. The goal of our research was to examine the current trend in liver transplants using data from a national database. Methods Using the International Classification of Diseases (ICD)-9 codes, we identified individuals who had a liver transplant during the index hospital admission in the Nationwide Inpatient Sample from 2007 to 2011. This national sample of patients is from the United States. We looked at the yearly trend in liver transplants and related outcomes, such as duration of hospitalization (DOH), hospital expenses, and mortality in the hospital. In order to find determinants of mortality, we used a multivariate analysis. Results There were 25,331 patients hospitalized (weighted for national estimate). Between 2007 and 2011, the number of transplants grew by 1.2%. The majority of transplant recipients were Caucasian (57%), with an average age of 54 years, had a private healthcare plan (53%), and had average earnings in the upper quartile by zip code (26%). Patients with a higher Charlson Comorbidity Index (79% had a score of four) were more likely to be admitted to a southern hospital (33%), an academic hospital (>99%), and a large capacity hospital (90%). Seventy percent of liver transplant recipients received cadaver donors. Hepatitis C was the most prevalent reason for transplant (30%), followed by hepatocellular carcinoma (HCC) (29%) and alcoholic liver disease (25%). In 2011, compared to 2007, there was an upward rise in fatality (from 3.8% to 5.1%), average hospital expenditures (from $335,504 to $498,369), and DOH (from 17.4 to 22.7 days). The cost of hospitalization was two billion dollars per year. The independent variables related to an increased mortality on multivariate analysis were African American race (OR: 2.0, 95%, CI: 1.2-3.2; p=0.005) and large capacity hospitals (OR: 2.5, 95% CI: 1.6-4.1; p=0.0002). Predictors linked to lower mortality included private healthcare coverage (vs. Medicare: OR: 0.7, 95%, CI: 0.51-0.97; p=0.03), academic hospital (OR: 0.6, 95% CI: 0.4-0.8; p=0.005), cadaver donor (OR: 0.6, 95% CI: 0.5-0.8; p=0.002), HCC (OR: 0.6, 95% CI: 0.4-0.9; p=0.01), and non-alcoholic steatohepatitis (NASH) cirrhosis (OR: 0.4, 95% CI: 0.2-0.9; p=0.02). Conclusion Our study found an increasing trend in worse outcomes (increased mortality, average hospital costs, and average DOH) after a liver transplant. Patients of the African American race and large capacity hospitals were associated with a higher risk of death, whereas private healthcare plans, academic hospitals, cadaver donors, HCC, and NASH cirrhosis were associated with a lower risk.
- Published
- 2021
7. PRPH2 mutation update: In silico assessment of 245 reported and 7 novel variants in patients with retinal disease
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Lonneke Haer-Wigman, Anneke I. den Hollander, Rob W.J. Collin, Mubeen Khan, Camiel J. F. Boon, Claire-Marie Dhaenens, Frans P.M. Cremers, Caroline C W Klaver, Carel B. Hoyng, Anoek A M B Rooijakkers, L. Ingeborgh van den Born, Manon Peeters, Timo W. F. Mulders, Ophthalmology, and ANS - Complex Trait Genetics
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medicine.medical_specialty ,In silico ,Mutation, Missense ,Peripherins ,Disease ,Biology ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,LOVD ,Unknown Significance ,Retinal Diseases ,Molecular genetics ,Genetics ,medicine ,Missense mutation ,Humans ,In patient ,Uncertain significance ,Genetics (clinical) ,Genetic Association Studies ,in silico assessment ,PRPH2 ,inherited retinal disease ,Mutation (genetic algorithm) ,molecular genetics ,Mutation - Abstract
Contains fulltext : 244059.pdf (Publisher’s version ) (Open Access) Mutations in PRPH2, encoding peripherin-2, are associated with the development of a wide variety of inherited retinal diseases (IRDs). To determine the causality of the many PRPH2 variants that have been discovered over the last decades, we surveyed all published PRPH2 variants up to July 2020, describing 720 index patients that in total carried 245 unique variants. In addition, we identified seven novel PRPH2 variants in eight additional index patients. The pathogenicity of all variants was determined using the ACMG guidelines. With this, 107 variants were classified as pathogenic, 92 as likely pathogenic, one as benign, and two as likely benign. The remaining 50 variants were classified as variants of uncertain significance. Interestingly, of the total 252 PRPH2 variants, more than half (n = 137) were missense variants. All variants were uploaded into the Leiden Open source Variation and ClinVar databases. Our study underscores the need for experimental assays for variants of unknown significance to improve pathogenicity classification, which would allow us to better understand genotype-phenotype correlations, and in the long-term, hopefully also support the development of therapeutic strategies for patients with PRPH2-associated IRD.
- Published
- 2021
8. Late-Onset Stargardt Disease Due to Mild, Deep-Intronic ABCA4 Alleles
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Jan-Willem R. Pott, Galuh D.N. Astuti, Esmee H. Runhart, Christian Gilissen, Silvia Albert, Carel B. Hoyng, Stéphanie S. Cornelis, Dyon Valkenburg, Joke B. G. M. Verheij, Riccardo Sangermano, Ellen A.W. Blokland, Mubeen Khan, Frans P.M. Cremers, L. Ingeborgh van den Born, and Nathalie M. Bax
- Subjects
Male ,0301 basic medicine ,medicine.medical_specialty ,PENETRANCE ,Population ,Visual Acuity ,ABCA4 ,P.ASN1868ILE ALLELE ,Late onset ,Kaplan-Meier Estimate ,Biology ,Gastroenterology ,disease expression ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,NONPENETRANCE ,03 medical and health sciences ,All institutes and research themes of the Radboud University Medical Center ,0302 clinical medicine ,Gene Frequency ,Internal medicine ,differential diagnosis ,medicine ,Humans ,Allele ,education ,Allele frequency ,Alleles ,Aged ,education.field_of_study ,Genetic Variation ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,MOUSE MODEL ,Middle Aged ,RETINAL-PIGMENT EPITHELIUM ,medicine.disease ,Penetrance ,AUTOFLUORESCENCE ,Stargardt disease ,030104 developmental biology ,030221 ophthalmology & optometry ,biology.protein ,ATP-Binding Cassette Transporters ,Female ,Age of onset - Abstract
PURPOSE. To investigate the role of two deep-intronic ABCA4 variants, that showed a mild splice defect in vitro and can occur on the same allele as the low penetrant c.5603A>T, in Stargardt disease (STGD1).METHODS. Ophthalmic data were assessed of 18 STGD1 patients who harbored c.769-784C>T or c.4253+43G>A in combination with a severe ABCA4 variant. Subjects carrying c.[769784C>T; 5603A>T] were clinically compared with a STGD1 cohort previously published carrying c.5603A>T noncomplex. We calculated the penetrances of the intronic variants using ABCA4 allele frequency data of the general population and investigated the effect of c.769-784C>T on splicing in photoreceptor progenitor cells (PPCs).RESULTS. Mostly, late-onset, foveal-sparing STGD1 was observed among subjects harboring c.769-784C>T or c.4253+43G>A (median age of onset, 54.5 and 52.0 years, respectively). However, ages of onset, phenotypes in fundo, and visual acuity courses varied widely. No significant clinical differences were observed between the c.[769-784C>T; 5603A>T] cohort and the c.4253+43G>A or the c.5603A>T cohort. The penetrances of c.769-784C>T (20.5%-39.6%) and c.4253+43G>A (35.8%-43.1%) were reduced, when not considering the effect of yet unidentified or known factors in cis, such as c.5603A>T (identified in 7/7 probands with c.769-784C>T; 1/8 probands with c.4253+43G>A). Variant c.769-784C>T resulted in a pseudo-exon insertion in 15% of the total mRNA (i.e., similar to 30% of the c.769-784C>T allele alone).CONCLUSIONS. Two mild intronic ABCA4 variants could further explain missing heritability in late-onset STGD1, distinguishing it from AMD. The observed clinical variability and calculated reduced penetrance urge research into modifiers within and outside of the ABCA4 gene.
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- 2019
9. ABCA4-associated disease as a model for missing heritability in autosomal recessive disorders: novel noncoding splice, cis-regulatory, structural, and recurrent hypomorphic variants
- Author
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Bernd Wissinger, Thomy de Ravel de l'Argentière, Frans P.M. Cremers, Jim Bauwens, Bart P. Leroy, Riccardo Sangermano, Caroline Van Cauwenbergh, Julie De Zaeytijd, Ana Fakin, Sarah De Jaegere, Toon Rosseel, Mubeen Khan, Gavin Arno, Susanne Kohl, Andrew R. Webster, Meindert De Vries, Elfride De Baere, Rob W.J. Collin, Alejandro Garanto, Irina Balikova, Keren J. Carss, Thalia Van Laethem, Miriam Bauwens, Kim De Leeneer, Marnik Vuylsteke, Sarah Naessens, Yves Sznajer, Timothy J. Cherry, Françoise Sadler, Nicole Weisschuh, Software Languages Lab, Informatics and Applied Informatics, Faculty of Sciences and Bioengineering Sciences, UCL - (SLuc) Centre de génétique médicale UCL, and UCL - SSS/IREC/SLUC - Pôle St.-Luc
- Subjects
DEEP-INTRONIC VARIANTS ,Male ,ABCA4 ,PHENOTYPE ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,Cohort Studies ,0302 clinical medicine ,Gene Frequency ,Missing heritability problem ,STARGARDT-DISEASE ,Medicine and Health Sciences ,Genetics(clinical) ,Genetics (clinical) ,Genetics ,0303 health sciences ,biology ,noncoding ,deep-intronic ,Exons ,DYSTROPHY ,Middle Aged ,Phenotype ,3. Good health ,Pedigree ,Female ,Adult ,Genes, Recessive ,ANTISENSE OLIGONUCLEOTIDES ,Article ,03 medical and health sciences ,All institutes and research themes of the Radboud University Medical Center ,AON ,Retinitis pigmentosa ,RETINITIS-PIGMENTOSA ,REVEALS ,Retinal Dystrophies ,medicine ,non-coding ,Humans ,splice ,Allele ,Gene ,Alleles ,030304 developmental biology ,SPECTRUM ,TRANSPORTER GENE ABCR ,MUTATIONS ,Biology and Life Sciences ,ABCA4-associated disease ,Oligonucleotides, Antisense ,medicine.disease ,Introns ,Stargardt disease ,HEK293 Cells ,missing heritability ,Mutation ,030221 ophthalmology & optometry ,biology.protein ,ATP-Binding Cassette Transporters - Abstract
PURPOSE: ABCA4-associated disease, a recessive retinal dystrophy, is hallmarked by a large proportion of patients with only one pathogenic ABCA4 variant, suggestive for missing heritability. METHODS: By locus-specific analysis of ABCA4, combined with extensive functional studies, we aimed to unravel the missing alleles in a cohort of 67 patients (p), with one (p = 64) or no (p = 3) identified coding pathogenic variants of ABCA4. RESULTS: We identified eight pathogenic (deep-)intronic ABCA4 splice variants, of which five are novel and six structural variants, four of which are novel, including two duplications. Together, these variants account for the missing alleles in 40.3% of patients. Furthermore, two novel variants with a putative cis-regulatory effect were identified. The common hypomorphic variant c.5603A>T p.(Asn1868Ile) was found as a candidate second allele in 43.3% of patients. Overall, we have elucidated the missing heritability in 83.6% of our cohort. In addition, we successfully rescued three deep-intronic variants using antisense oligonucleotide (AON)-mediated treatment in HEK 293-T cells and in patient-derived fibroblast cells. CONCLUSION: Noncoding pathogenic variants, novel structural variants, and a common hypomorphic allele of the ABCA4 gene explain the majority of unsolved cases with ABCA4-associated disease, rendering this retinopathy a model for missing heritability in autosomal recessive disorders. ispartof: GENETICS IN MEDICINE vol:21 issue:8 pages:1761-1771 ispartof: location:United States status: published
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- 2019
10. Deep-intronic ABCA4 variants explain missing heritability in Stargardt disease and allow correction of splice defects by antisense oligonucleotides
- Author
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Gavin Arno, Bernhard H. F. Weber, Carel B. Hoyng, L. Ingeborgh van den Born, Nathalie M. Bax, Silvia Albert, Frans P.M. Cremers, Keren J. Carss, Stéphanie S. Cornelis, Felix Grassmann, Caroline C W Klaver, F. Lucy Raymond, Mubeen Khan, Ana Fakin, Andrew R. Webster, Muhammad Imran Khan, Claire Marie Dhaenens, Riccardo Sangermano, Elfride De Baere, Sarah Naessens, Heidi Stöhr, Rob W.J. Collin, Alberta A H J Thiadens, Jan Willem R. Pott, Esmee H. Runhart, Miriam Bauwens, Bernard Puech, Isabelle Meunier, Joke B. G. M. Verheij, Alejandro Garanto, Ophthalmology, and Epidemiology
- Subjects
0301 basic medicine ,antisense oligonucleotide ,030105 genetics & heredity ,ABCA4 ,Exon ,Missing heritability problem ,Medicine and Health Sciences ,Protein Isoforms ,Genetics(clinical) ,Child ,Genetics (clinical) ,Exome sequencing ,POPULATION ,Genetics ,education.field_of_study ,Exons ,Middle Aged ,3. Good health ,Pedigree ,Stargardt disease ,RNA splicing ,Adult ,Adolescent ,RNA Splicing ,Population ,Biology ,Polymorphism, Single Nucleotide ,Article ,03 medical and health sciences ,Young Adult ,REVEALS ,medicine ,Humans ,splice ,education ,Gene ,Aged ,MUTATIONS ,deep-intronic variant ,Biology and Life Sciences ,IN-VITRO ,Oligonucleotides, Antisense ,medicine.disease ,GENE ,Introns ,030104 developmental biology ,HEK293 Cells ,Mutation ,missing heritability ,ATP-Binding Cassette Transporters - Abstract
Purpose: Using exome sequencing, the underlying variants in many persons with autosomal recessive diseases remain undetected. We explored autosomal recessive Stargardt disease (STGD1) as a model to identify the missing heritability.Methods: Sequencing of ABCA4 was performed in 8 STGD1 cases with one variant and p.Asn1868Ile in trans, 25 cases with one variant, and 3 cases with no ABCA4 variant. The effect of intronic variants was analyzed using in vitro splice assays in HEK293T cells and patient-derived fibroblasts. Antisense oligonucleotides were used to correct splice defects.Results: In 24 of the probands (67%), one known and five novel deep-intronic variants were found. The five novel variants resulted in messenger RNA pseudoexon inclusions, due to strengthening of cryptic splice sites or by disrupting a splicing silencer motif. Variant c.769-784C>T showed partial insertion of a pseudoexon and was found in cis with c.5603A>T (p.Asn1868Ile), so its causal role could not be fully established. Variant c.4253+43G>A resulted in partial skipping of exon 28. Remarkably, antisense oligonucleotides targeting the aberrant splice processes resulted in (partial) correction of all splicing defects.Conclusion: Our data demonstrate the importance of assessing noncoding variants in genetic diseases, and show the great potential of splice modulation therapy for deep-intronic variants.
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- 2019
11. PRPH2 mutation update: In silico assessment of 245 reported and 7 novel variants in patients with retinal disease
- Author
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Manon H.C.A Peeters, Mubeen Khan, Anoek A.M.B Rooijakkers, Timo Mulders, Lonneke Haer-Wigman, Camiel Boon, Caroline Klaver, Ingeborgh van den Born, Carel Hoyng, Frans Cremers, Anneke denHollander, Claire-Marie Dhaenens, and Rob Collin
- Abstract
Mutations in PRPH2, encoding peripherin-2, are associated with the development of a wide variety of inherited retinal diseases (IRDs). To determine the causality of the many PRPH2 variants that have been discovered over the last decades, we surveyed all published PRPH2 variants up to July 2020, describing 720 index patients that in total carried 245 unique variants. In addition, we identified seven novel PRPH2 variants in eight additional index patients. The pathogenicity of all variants was determined using the ACMG guidelines. With this, 107 variants were classified as pathogenic, 92 as likely pathogenic, one as benign, and two as likely benign. The remaining 50 variants were classified as variants of uncertain significance. Interestingly, of the in total 252 PRPH2 variants, more than half (n=137) were missense variants. All variants were uploaded into the Leiden Open source Variation Database. Our study underscores the need of experimental assays for variants of unknown significance to improve pathogenicity classification, which is needed to better understand genotype-phenotype correlations, and in the long-term, hopefully also support the development of therapeutic strategies for patients with PRPH2-associated IRD.
- Published
- 2021
12. Hepatitis C Virus in the Elderly in the Direct-Acting Antiviral Era: from Diagnosis to Cure
- Author
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Susan M K Lee, Heather S. Snyder, Mythili Chunduru, Mubeen Khan Mohammed Abdul, and Sanjaya K. Satapathy
- Subjects
0301 basic medicine ,Cultural Studies ,Linguistics and Language ,History ,Population ageing ,medicine.medical_specialty ,Aging ,Hepatitis C virus ,030106 microbiology ,Population ,medicine.disease_cause ,Language and Linguistics ,Direct acting antivirals ,Drug interactions ,03 medical and health sciences ,0302 clinical medicine ,Elderly ,Internal medicine ,medicine ,030212 general & internal medicine ,education ,Veterans Affairs ,education.field_of_study ,business.industry ,Hepatitis C (J Raybould, Section Editor) ,Hepatitis C ,medicine.disease ,Review article ,Clinical trial ,Anthropology ,Viral hepatitis ,business - Abstract
Purpose of review Hepatitis C (HCV) is the most common cause of viral hepatitis in elderly individuals. This patient population previously experienced suboptimal outcomes with interferon-based regimens. Unfortunately, patients aged 65 years and older were underrepresented in phase 2 and 3 clinical trials with newer direct acting antiviral (DAA) therapies. Since the advent of second-generation DAA in 2013, numerous robust real-world experiences highlighting the efficacy and safety of DAA in the elderly have been published. This review article summarizes the cascade of care for hepatitis C from diagnosis to cure from an evidence-based perspective of the aging population. Recent finding In a large study from the Veterans Affairs Healthcare System, the overall sustained virologic response (SVR) of 15,884 patients treated with DAA regimens was 91.2%. These newer therapies remained highly effective in the subset of patients aged 65 years and older with SVR rates above 90%. A Spanish National Registry reported outcomes in patients ≥ 65 years old treated for HCV with oral DAA regimens over a 2-year period. The overall SVR was 94% in the study of 1252 subjects. Summary Current real-world data imply DAA treatment regimens remain highly effective and safe in elderly patients when compared to the general population.
- Published
- 2020
13. Change in the Mortality Trend of Hospitalized Patients with Clostridium difficile Infection: A Nation-wide Study
- Author
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Sanjay Bhandari and Mubeen Khan Mohammed Abdul
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Pediatrics ,medicine.medical_specialty ,mortality trends ,genetic structures ,business.industry ,Hospitalized patients ,Incidence (epidemiology) ,Gastroenterology ,General Engineering ,hospitalized patients ,Mean age ,clostridium difficile ,030204 cardiovascular system & hematology ,Clostridium difficile ,03 medical and health sciences ,0302 clinical medicine ,Hospital outcomes ,Internal Medicine ,Medicine ,National database ,West coast ,business ,Healthcare Cost and Utilization Project ,030217 neurology & neurosurgery - Abstract
Background According to the Healthcare Cost and Utilization Project (HCUP), mortality in Clostridium difficile infection (CDI) has been rising since 2009, and an upward trend in mortality has been noted. Although there have been studies exploring the incidence of CDI and mortality in the national database, those studies were limited to one particular year. With the advent of newer modalities of diagnosis and treatment for CDI, the recent multiyear trend in disease-specific outcomes from large administrative databases is unknown. Objective To study the recent trend in nationwide hospital admissions and mortality along with hospital outcomes. Methods We queried the identified National Inpatient Sample from 2007 to 2011 to identify patients of age >18 years, with a discharge diagnosis of CDI identified by the International Classification of Diseases, 9th edition (ICD-9), clinical modification codes 008.45, respectively. Results We identified a decline in CDI mortality to 2.67% in 2011 as compared to 3.83% in 2007 (P
- Published
- 2020
14. In or Out? New Insights on Exon Recognition through Splice-Site Interdependency
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Jan Amsu, Stéphanie S. Cornelis, Riccardo Sangermano, Frans P.M. Cremers, Iris J M Post, Amber Janssen Groesbeek, Rob W.J. Collin, Alejandro Garanto, Mubeen Khan, and Christian Gilissen
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RNA Splicing ,ABCA4 ,interdependency ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,Catalysis ,Article ,Inorganic Chemistry ,Dystrophin ,lcsh:Chemistry ,Pre-mRNA ,Exon ,splicing ,All institutes and research themes of the Radboud University Medical Center ,Humans ,splice ,Physical and Theoretical Chemistry ,Molecular Biology ,lcsh:QH301-705.5 ,Spectroscopy ,Genetics ,biology ,Organic Chemistry ,HEK 293 cells ,Membrane Proteins ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,General Medicine ,Exons ,Exon skipping ,Computer Science Applications ,HEK293 Cells ,5′ and 3′ splice sites ,lcsh:Biology (General) ,lcsh:QD1-999 ,RNA splicing ,biology.protein ,ATP-Binding Cassette Transporters ,RNA Splice Sites ,Sequence motif ,Precursor mRNA - Abstract
Noncanonical splice-site mutations are an important cause of inherited diseases. Based on in vitro and stem-cell-based studies, some splice-site variants show a stronger splice defect than expected based on their predicted effects, suggesting that other sequence motifs influence the outcome. We investigated whether splice defects due to human-inherited-disease-associated variants in noncanonical splice-site sequences in ABCA4, DMD, and TMC1 could be rescued by strengthening the splice site on the other side of the exon. Noncanonical 5&prime, and 3&prime, splice-site variants were selected. Rescue variants were introduced based on an increase in predicted splice-site strength, and the effects of these variants were analyzed using in vitro splice assays in HEK293T cells. Exon skipping due to five variants in noncanonical splice sites of exons in ABCA4, DMD, and TMC1 could be partially or completely rescued by increasing the predicted strengths of the other splice site of the same exon. We named this mechanism &ldquo, splicing interdependency&rdquo, and it is likely based on exon recognition by splicing machinery. Awareness of this interdependency is of importance in the classification of noncanonical splice-site variants associated with disease and may open new opportunities for treatments.
- Published
- 2020
15. Resolving the dark matter of ABCA4 for 1054 Stargardt disease probands through integrated genomics and transcriptomics
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Ymkje M. Hettinga, Karsten Hufendiek, Jacek P. Szaflik, Ian M. MacDonald, Isabelle Meunier, Marcela D. Mena, Kaoru Fujinami, Mubeen Khan, Eyal Banin, Elfride De Baere, G. Jane Farrar, Adrian Dockery, Rianne Miller, Tamar Ben-Yosef, Manar Salameh, L. Ingeborgh van den Born, Anna M Tracewska, Sandro Banfi, Caroline C W Klaver, John N. De Roach, Carmen Ayuso, Sabine Defoort, Damjan Glavač, Ulrich Kellner, Juliana Maria Ferraz Sallum, Claire-Marie Dhaenens, Stéphanie S. Cornelis, Bernhard H. F. Weber, Klaus Rüther, Jennifer A. Thompson, Bernard Puech, Raj Ramesar, Aurore Devos, Lisa Roberts, Herbert Jägle, Osvaldo L. Podhajcer, Hadas Newman, Bohdan Kousal, Femke Bults, Marta Del Pozo-Valero, Marc Pieterse, Laura Whelan, Xavier Zanlonghi, Alaa AlTalbishi, Francesca Simonelli, Marloes Steehouwer, Caroline Thuillier, Frans P.M. Cremers, Andrea L Vincent, Smaragda Kamakari, Ana Fakin, Anna Matynia, Dror Sharon, Ketan Mishra, Mariana Vallim Salles, Heidi Stöhr, Miriam Bauwens, Petra Liskova, Esmee H. Runhart, Buhle Ntozini, Georg Spital, Carel B. Hoyng, Takaaki Hayashi, Terri L. McLaren, Martine van Zweeden, Lubica Dudakova, Camiel J. F. Boon, Christian Gilissen, Jacquie Greenberg, Monika Ołdak, Tina M. Lamey, Yahya AlSwaiti, Alexander Hoischen, Marianthi Karali, Michael B. Gorin, Ophthalmology, ANS - Complex Trait Genetics, Khan, Mubeen, Cornelis, Stéphanie S, Pozo-Valero, Marta Del, Whelan, Laura, Runhart, Esmee H, Mishra, Ketan, Bults, Femke, Alswaiti, Yahya, Altalbishi, Alaa, De Baere, Elfride, Banfi, Sandro, Banin, Eyal, Bauwens, Miriam, Ben-Yosef, Tamar, Boon, Camiel J F, van den Born, L Ingeborgh, Defoort, Sabine, Devos, Aurore, Dockery, Adrian, Dudakova, Lubica, Fakin, Ana, Farrar, G Jane, Sallum, Juliana Maria Ferraz, Fujinami, Kaoru, Gilissen, Christian, Glavač, Damjan, Gorin, Michael B, Greenberg, Jacquie, Hayashi, Takaaki, Hettinga, Ymkje M, Hoischen, Alexander, Hoyng, Carel B, Hufendiek, Karsten, Jägle, Herbert, Kamakari, Smaragda, Karali, Marianthi, Kellner, Ulrich, Klaver, Caroline C W, Kousal, Bohdan, Lamey, Tina M, Macdonald, Ian M, Matynia, Anna, Mclaren, Terri L, Mena, Marcela D, Meunier, Isabelle, Miller, Rianne, Newman, Hada, Ntozini, Buhle, Oldak, Monika, Pieterse, Marc, Podhajcer, Osvaldo L, Puech, Bernard, Ramesar, Raj, Rüther, Klau, Salameh, Manar, Salles, Mariana Vallim, Sharon, Dror, Simonelli, Francesca, Spital, Georg, Steehouwer, Marloe, Szaflik, Jacek P, Thompson, Jennifer A, Thuillier, Caroline, Tracewska, Anna M, van Zweeden, Martine, Vincent, Andrea L, Zanlonghi, Xavier, Liskova, Petra, Stöhr, Heidi, Roach, John N De, Ayuso, Carmen, Roberts, Lisa, Weber, Bernhard H F, Dhaenens, Claire-Marie, and Cremers, Frans P M
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DEEP-INTRONIC VARIANTS ,Proband ,smMIP ,lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4] ,ABCA4 ,RPE65 ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,Macular Degeneration ,Exon ,0302 clinical medicine ,Missing heritability problem ,purl.org/becyt/ford/3.2 [https] ,Medicine and Health Sciences ,smMIPs ,MUTATION ,Genetics (clinical) ,Genetics ,variants ,0303 health sciences ,structural ,biology ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Genomics ,DYSTROPHY ,Pedigree ,3. Good health ,Stargardt disease ,MATERNAL UNIPARENTAL ISODISOMY ,purl.org/becyt/ford/3 [https] ,RETINAL ,CHROMOSOME-1 ,PATIENT ,STRUCTURAL VARIANTS ,Deep sequencing ,03 medical and health sciences ,SDG 3 - Good Health and Well-being ,deep-intronic variants ,REVEALS ,medicine ,Humans ,030304 developmental biology ,REPAIR ,deep-intronic variant ,structural variants ,medicine.disease ,GENE ,Introns ,Uniparental Isodisomy ,Mutation ,030221 ophthalmology & optometry ,biology.protein ,ATP-Binding Cassette Transporters ,Transcriptome - Abstract
Purpose: Missing heritability in human diseases represents a major challenge, and this is particularly true for ABCA4-associated Stargardt disease (STGD1). We aimed to elucidate the genomic and transcriptomic variation in 1054 unsolved STGD and STGD-like probands. Methods: Sequencing of the complete 128-kb ABCA4 gene was performed using single-molecule molecular inversion probes (smMIPs), based on a semiautomated and cost-effective method. Structural variants (SVs) were identified using relative read coverage analyses and putative splice defects were studied using in vitro assays. Results: In 448 biallelic probands 14 known and 13 novel deep-intronic variants were found, resulting in pseudoexon (PE) insertions or exon elongations in 105 alleles. Intriguingly, intron 13 variants c.1938-621G>A and c.1938-514G>A resulted in dual PE insertions consisting of the same upstream, but different downstream PEs. The intron 44 variant c.6148-84A>T resulted in two PE insertions and flanking exon deletions. Eleven distinct large deletions were found, two of which contained small inverted segments. Uniparental isodisomy of chromosome 1 was identified in one proband. Conclusion: Deep sequencing of ABCA4 and midigene-based splice assays allowed the identification of SVs and causal deep-intronic variants in 25% of biallelic STGD1 cases, which represents a model study that can be applied to other inherited diseases. Fil: Khan, Mubeen. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Cornelis, Stéphanie S.. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Del Pozo Valero, Marta. Hospital Universitario Fundación Jiménez Díaz; España. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Whelan, Laura. Trinity College; Estados Unidos Fil: Runhart, Esmee H.. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Mishra, Ketan. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Bults, Femke. Radboud University Nijmegen Medical Centre; Países Bajos Fil: AlSwaiti, Yahya. St John of Jerusalem Eye Hospital Group; Palestina (ANP) Fil: AlTalbishi, Alaa. St John of Jerusalem Eye Hospital Group; Palestina (ANP) Fil: De Baere, Elfride. University of Ghent; Bélgica Fil: Banfi, Sandro. Seconda Universita Degli Studi Di Napoli; Italia Fil: Banin, Eyal. The Hebrew University of Jerusalem; Israel Fil: Bauwens, Miriam. University of Ghent; Bélgica Fil: Ben Yosef, Tamar. The Ruth And Bruce Rappaport Faculty Of Medicine; Israel Fil: Boon, Camiel J. F.. Leiden University. Leiden University Medical Center; Países Bajos Fil: van den Born, L. Ingeborgh. Rotterdam Ophthalmic Institute; Países Bajos Fil: Defoort, Sabine. Universite Lille; Francia Fil: Devos, Aurore. Universite Lille; Francia Fil: Dockery, Adrian. Trinity College; Estados Unidos Fil: Dudakova, Lubica. Charles University and General University Hospital; República Checa Fil: Fakin, Ana. Charles University and General University Hospital; República Checa Fil: Farrar, G. Jane. Trinity College; Estados Unidos Fil: Ferraz Sallum, Juliana Maria. Universidade Federal de Sao Paulo; Brasil Fil: Fujinami, Kaoru. UCL Institute of Ophthalmology; Reino Unido Fil: Gilissen, Christian. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Glavac, Damjan. University of Ljubljana; Eslovenia Fil: Gorin, Michael B.. University of California at Los Angeles. School of Medicine; Estados Unidos Fil: Greenberg, Jacquie. University of Cape Town; Sudáfrica Fil: Hayashi, Takaaki. The Jikei University School of Medicine; Japón Fil: Hettinga, Ymkje M.. Bartiméus Diagnostic Center for Complex Visual Disorders; Países Bajos Fil: Hoischen, Alexander. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Hoyng, Carel B.. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Hufendiek, Karsten. University Eye Hospital Hannover Medical School; Alemania Fil: Jägle, Herbert. University Regensburg; Alemania Fil: Kamakari, Smaragda. OMMA Ophthalmological Institute of Athens; Grecia Fil: Karali, Marianthi. Seconda Universita Degli Studi Di Napoli; Italia Fil: Kellner, Ulrich. No especifíca; Fil: Klaver, Caroline C. W.. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Kousal, Bohdan. Charles University and General University Hospital; República Checa Fil: Lamey, Tina M.. University of Western Australia; Australia Fil: MacDonald, Ian M.. University of Alberta; Canadá Fil: Matynia, Anna. University of California at Los Angeles. School of Medicine; Estados Unidos Fil: McLaren, Terri L.. University of Western Australia; Australia Fil: Mena, Marcela D.. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Bioquímicas de Buenos Aires. Fundación Instituto Leloir. Instituto de Investigaciones Bioquímicas de Buenos Aires; Argentina Fil: Meunier, Isabelle. Université Montpellier II; Francia Fil: Miller, Rianne. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Newman, Hadas. Universitat Tel Aviv; Israel Fil: Ntozini, Buhle. University of Cape Town; Sudáfrica Fil: Oldak, Monika. No especifíca; Fil: Pieterse, Marc. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Podhajcer, Osvaldo Luis. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Bioquímicas de Buenos Aires. Fundación Instituto Leloir. Instituto de Investigaciones Bioquímicas de Buenos Aires; Argentina Fil: Puech, Bernard. Universite Lille; Francia Fil: Ramesar, Raj. University of Cape Town; Sudáfrica Fil: Rüther, Klaus. No especifíca; Fil: Salameh, Manar. No especifíca; Fil: Salles, Mariana Vallim. Universidade de Sao Paulo; Brasil Fil: Sharon, Dror. The Hebrew University of Jerusalem; Israel Fil: Simonelli, Francesca. Seconda Universita Degli Studi Di Napoli; Italia Fil: Spital, Georg. No especifíca; Fil: Steehouwer, Marloes. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Szaflik, Jacek P.. No especifíca; Fil: Thompson, Jennifer A.. No especifíca; Fil: Thuillier, Caroline. Universite Lille; Francia Fil: Tracewska, Anna M.. No especifíca; Fil: van Zweeden, Martine. Radboud University Nijmegen Medical Centre; Países Bajos Fil: Vincent, Andrea L.. University of Auckland; Nueva Zelanda Fil: Zanlonghi, Xavier. No especifíca; Fil: Liskova, Petra. Charles University and General University Hospital; República Checa Fil: Stöhr, Heidi. Universitat Regensburg; Alemania Fil: De Roach, John N.. University of Western Australia; Australia Fil: Ayuso, Carmen. Hospital Universitario Fundación Jiménez Díaz; España Fil: Roberts, Lisa. University of Cape Town; Sudáfrica Fil: Weber, Bernhard H. F.. Universitat Regensburg; Alemania Fil: Dhaenens, Claire Marie. Universite Lille; Francia Fil: Cremers, Frans P. M.. Radboud University Nijmegen Medical Centre; Países Bajos
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- 2020
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16. ABCA4-Associated Stargardt Disease
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Mubeen Khan and Frans P.M. Cremers
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0301 basic medicine ,ABCA4 ,030105 genetics & heredity ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,03 medical and health sciences ,Macular Degeneration ,medicine ,Humans ,Stargardt Disease ,Allele ,Progenitor cell ,Gene ,Alleles ,Genetics ,biology ,Dystrophy ,medicine.disease ,Penetrance ,Stargardt disease ,Ophthalmology ,030104 developmental biology ,Phenotype ,Mutation ,biology.protein ,ATP-Binding Cassette Transporters ,Stem cell - Abstract
Autosomal recessive Stargardt disease (STGD1) is associated with variants in the ABCA4 gene. The phenotypes range from early-onset STGD1, that clinically resembles severe cone-rod dystrophy, to intermediate STGD1 and late-onset STGD1. These different phenotypes can be correlated with different combinations of ABCA4 variants which can be classified according to their degree of severity. A significant fraction of STGD1 cases, particularly late-onset STGD1 cases, were shown to carry only a single ABCA4 variant. A frequent coding variant (p.Asn1868Ile) was recently identified which – in combination with a severe ABCA4 variant – is generally associated with late-onset STGD1. In addition, an increasing number of rare deep-intronic variants have been found and some of these are also associated with late-onset STGD1. The effect of these and other variants on ABCA4 RNA was tested using in vitro assays in human kidney cells using specially designed midigenes. With stem cells and photoreceptor progenitor cells derived from patient skin or blood cells, retina-specific splice defects can be assessed. With expert clinical examination to distinguish STGD1 cases from other maculopathies, as well as in-depth genomics and transcriptomics data, it is now possible to identify both mutant ABCA4 alleles in > 95% of cases.
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- 2020
17. Detailed Phenotyping and Therapeutic Strategies for Intronic ABCA4 Variants in Stargardt Disease
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Michael C. Hogden, Rob W.J. Collin, Lonneke Duijkers, Mubeen Khan, Andrew R. Webster, David A. Parfitt, Alejandro Garanto, Davide Piccolo, Ana Fakin, Nathalie M. Bax, Frans P.M. Cremers, Gavin Arno, Kwan L. Hau, Patty P.A. Dhooge, Michael Niblock, Carel B. Hoyng, Michael E. Cheetham, Edward Bloch, Silvia Albert, and Elena R. Schiff
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0301 basic medicine ,retina ,Subfamily ,ABCA4 ,Article ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,splicing ,03 medical and health sciences ,0302 clinical medicine ,stem cells ,Drug Discovery ,medicine ,Allele ,Induced pluripotent stem cell ,Gene ,organoids ,Genetics ,iPSC ,biology ,lcsh:RM1-950 ,intronic mutations ,Intron ,photoreceptors ,medicine.disease ,3. Good health ,Stargardt disease ,lcsh:Therapeutics. Pharmacology ,030104 developmental biology ,030220 oncology & carcinogenesis ,RNA splicing ,biology.protein ,Molecular Medicine ,antisense oligonucleotides - Abstract
Stargardt disease is a progressive retinal disorder caused by bi-allelic mutations in the ABCA4 gene that encodes the ATP-binding cassette, subfamily A, member 4 transporter protein. Over the past few years, we and others have identified several pathogenic variants that reside within the introns of ABCA4, including a recurrent variant in intron 36 (c.5196+1137G>A) of which the pathogenicity so far remained controversial. Detailed clinical characterization of this variant confirmed its pathogenic nature, and classified it as an allele of intermediate severity. Moreover, we discovered several additional ABCA4 variants clustering in intron 36. Several of these variants resulted in aberrant splicing of ABCA4, i.e., the inclusion of pseudoexons, while the splicing defects caused by the recurrent c.5196+1137G>A variant strongly increased upon differentiation of patient-derived induced pluripotent stem cells into retina-like cells. Finally, all splicing defects could be rescued by the administration of antisense oligonucleotides that were designed to specifically block the pseudoexon insertion, including rescue in 3D retinal organoids harboring the c.5196+1137G>A variant. Our data illustrate the importance of intronic variants in ABCA4 and expand the therapeutic possibilities for overcoming splicing defects in Stargardt disease., Graphical Abstract, Khan et al. report on the clinical characterization of patients harboring a recurrent deep-intronic variant in ABCA4 underlying retinal disease and demonstrate that this, and other variants close by, lead to splicing defects that can be rescued by antisense oligonucleotides.
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- 2020
18. SHROOM3-FYN Interaction Regulates Nephrin Phosphorylation and Affects Albuminuria in Allografts
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Arun Cumpelik, Tong Liu, Chengguo Wei, Jui Choudhuri, Ruijie Liu, Kirk N. Campbell, Madhav C. Menon, Nimrod Philippe, Felipe Garzon, Philip J. O'Connell, John Cijiang He, Barbara Murphy, Karen Keung, Weijia Zhang, Jenny Wong, Bhaskar C. Das, Zhengzi Yi, Lewis Kaufman, Paolo Cravedi, Fadi Salem, Miguel Fribourg, Khadija Banu, John M. Basgen, and Mubeen Khan
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Male ,0301 basic medicine ,urologic and male genital diseases ,Kidney ,Proto-Oncogene Proteins c-fyn ,Podocyte ,Mice ,Phosphorylation ,RNA, Small Interfering ,Child ,Mice, Knockout ,Gene knockdown ,biology ,Podocytes ,Chemistry ,Homozygote ,Microfilament Proteins ,General Medicine ,Middle Aged ,Allografts ,Cell biology ,Actin Cytoskeleton ,Enhancer Elements, Genetic ,medicine.anatomical_structure ,Nephrology ,Child, Preschool ,Gene Knockdown Techniques ,Female ,medicine.symptom ,Tyrosine kinase ,Glomerular Filtration Rate ,Signal Transduction ,Proto-oncogene tyrosine-protein kinase Src ,Adult ,Mice, 129 Strain ,Adolescent ,Polymorphism, Single Nucleotide ,src Homology Domains ,Nephrin ,Young Adult ,03 medical and health sciences ,FYN ,medicine ,Albuminuria ,Animals ,Humans ,Renal Insufficiency, Chronic ,Aged ,Membrane Proteins ,Actin cytoskeleton ,Kidney Transplantation ,Mice, Inbred C57BL ,Basic Research ,030104 developmental biology ,biology.protein - Abstract
Background We previously showed that the presence of a CKD-associated locus in SHROOM3 in a donor kidney results in increased expression of SHROOM3 (an F-actin–binding protein important for epithelial morphogenesis, via rho-kinase [ROCK] binding); this facilitates TGF-b signaling and allograft fibrosis. However, other evidence suggests Shroom3 may have a protective role in glomerular development. Methods We used human data, Shroom3 knockdown podocytes, and inducible shRNA-mediated knockdown mice to study the role of Shroom3 in adult glomeruli. Results Expression data from the Nephroseq database showed glomerular and nonglomerular SHROOM3 had opposing associations with renal function in CKD biopsy samples. In human allografts, homozygosity at rs17319721, the SHROOM3 locus linked with lower GFR, was associated with reduced albuminuria by 2 years after transplant. Although our previous data showed reduced renal fibrosis with tubular Shroom3 knockdown, this study found that glomerular but not tubular Shroom3 knockdown induced albuminuria. Electron microscopy revealed diffuse foot process effacement, and glomerular RNA-sequencing showed enrichment of tyrosine kinase signaling and podocyte actin cytoskeleton pathways in knockdown mice. Screening SHROOM3-interacting proteins identified FYN (a src-kinase) as a candidate.We confirmed the interaction of endogenous SHROOM3 with FYN in human podocytes via a critical Src homology 3–binding domain, distinct from its ROCK-binding domain. Shroom3-Fyn interaction was required in vitro and in vivo for activation of Fyn kinase and downstream nephrin phosphorylation in podocytes. SHROOM3 knockdown altered podocyte morphology, cytoskeleton, adhesion, and migration. Conclusions We demonstrate a novel mechanism that may explain SHROOM3’s dichotomous associations in glomerular versus nonglomerular compartments in CKD
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- 2018
19. Therapy-induced histopathological changes in breast cancers: The changing role of pathology in breast cancer diagnosis and treatment
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Shazima Sheereen, Flora D Lobo, Waseemoddin Patel, Shamama Sheereen, Abhishek Singh Nayyar, and Mubeen Khan
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breast cancers ,Breast cancer diagnosis and treatment ,skin and connective tissue diseases ,therapy-induced histopathological changes ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,lcsh:RC254-282 ,neoadjuvant chemotherapy - Abstract
Aim: Breast cancer therapy causes morphological alterations in the cancerous as well as the surrounding healthy tissue. The histopathological interpretation in such cases, thus, requires a thorough knowledge of the cytological and stromal changes rendered by the therapy during and posttherapy. The aim of the present study was to evaluate such cytological and stromal changes rendered by the therapy in breast cancer cases. Methods: The present study was a combined retrospective and prospective study, wherein clinical and histopathological details were collected from a total of 39 cases of breast carcinoma before and posttherapy, and the changes induced by the therapy were correlated. Results: Stage II breast carcinoma was found to be the most predominant stage, while invasive ductal carcinoma-not otherwise specified (IDC-NOS) of tumor was the most common histologic type both before (94.87%) and after (76.92%) therapy. Pathologic complete response (pCR) was observed in 18% of the cases while 15% showed pathologic partial response (pPR) and 66.7% cases had a stable disease. Intracellular changes commonly noted after chemotherapy included nuclear enlargement, hyperchromasia, and increased nuclear: cytoplasmic ratio while predominant stromal changes included necrosis (74.4%), fibrosis (64.1%), and desmoplasia (59%). Conclusion: Breast cancer therapy causes morphological alterations in the cancerous as well as the surrounding healthy tissue. The histopathological interpretation in such cases, thus, requires a thorough knowledge of the cytological and stromal changes rendered by the therapy.
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- 2018
20. Increased Rate of Venous Thromboembolism in Hospitalized Inflammatory Bowel Disease Patients with Clostridium Difficile Infection
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Sanjay Bhandari, Mubeen Khan Mohammed Abdul, Binod Dhakal, Lisa Baumann Kreuziger, Kia Saeian, and Daniel Stein
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medicine.medical_specialty ,genetic structures ,business.industry ,Gastroenterology ,Subgroup analysis ,Odds ratio ,Clostridium difficile ,medicine.disease ,Inflammatory bowel disease ,Ulcerative colitis ,digestive system diseases ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Propensity score matching ,Immunology and Allergy ,Medicine ,030211 gastroenterology & hepatology ,cardiovascular diseases ,030212 general & internal medicine ,Colitis ,Young adult ,business - Abstract
BACKGROUND Risk of venous thromboembolism (VTE) in patients with inflammatory bowel disease (IBD) is well established; however, there is paucity of data on the potential added risk of VTE in patients with IBD with Clostridium difficile infection (CDI). We sought to study the difference in VTE rates in hospitalized patients with IBD with CDI compared to those without CDI. METHODS We queried Nationwide Inpatient Sample from year 2011 to identify patients ≥18 years of age with a discharge diagnosis of IBD (i.e., Crohn's disease and ulcerative colitis) based on ICD-9-CM codes 555.xx and 556.xx, respectively. Patients were further divided into 2 groups: those with and without CDI. To adjust and control for potential baseline differences between groups, 1:1 propensity matching was performed. Multivariate regression analysis was used to evaluate the difference in VTE rates in 2 groups. RESULTS Of 312,147 patients with the discharge diagnosis of IBD, 12,560 (4%) had CDI. VTE was present 6% in group with CDI versus 3% in group without CDI (P < 0.001). On performing multivariate analysis after propensity-score matching, CDI was significantly associated with VTE (adjusted odds ratio 1.7, 95% confidence interval 1.4-2.2, P < 0.001). On subgroup analysis, Crohn's disease with CDI had a higher association with VTE compared with Crohn's disease only. Similarly, ulcerative colitis with CDI had a higher association with VTE compared with ulcerative colitis only. CONCLUSIONS Rate of VTE was higher in hospitalized patients with IBD with CDI compared with those without CDI, necessitating extra vigilance in this patient population.
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- 2017
21. Sa1971 EFFICACY AND SAFETY OF SELF-EXPANDABLE METAL STENTS FOR MANAGEMENT OF BARIATRIC SURGERY LEAKS. A SYSTEMATIC REVIEW AND META-ANALYSIS
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Tobias Zuchelli, Ahmad Khan, Khwaja F. Haq, Monica Saumoy, Umair Iqbal, Reem Z. Sharaiha, Hafsa Anwar, Faisal Kamal, Muhammad Ali Khan, and Mubeen Khan Mohammed Abdul
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medicine.medical_specialty ,business.industry ,Meta-analysis ,Gastroenterology ,medicine ,Radiology, Nuclear Medicine and imaging ,business ,Surgery ,Self Expandable Metal Stents - Published
- 2020
22. Healthcare Resource Utilization in Obese Patients With High MELD (≥ 35) Undergoing Liver Transplantation: Presidential Poster Award
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Mubeen Khan Mohammed Abdul, Pradeep S. B. Podila, Stephen J. Soufleris, Bilal Ali, and Satheesh Nair
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medicine.medical_specialty ,Hepatology ,Presidential system ,business.industry ,medicine.medical_treatment ,Health care ,Gastroenterology ,medicine ,Liver transplantation ,business ,Intensive care medicine ,Resource utilization - Published
- 2018
23. Resolving the dark matter of ABCA4 for 1,054 Stargardt disease probands through integrated genomics and transcriptomics
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Carel B. Hoyng, Yahya AlSwaiti, Lubica Dudakova, Alexander Hoischen, Lisa Roberts, Christian Gilissen, Michael B. Gorin, Marc Pieterse, Isabelle Meunier, Damjan Glavač, Jacek P. Szaflik, Andrea L Vincent, Dror Sharon, Xavier Zanlonghi, Martine van Zweeden, Monika Ołdak, Bernard Puech, Camiel J. F. Boon, Femke Bults, Anna M. Tracewska, Marloes Steehouwer, Caroline C W Klaver, Jacquie Greenberg, Hadas Newman, Bohdan Kousal, Miriam Bauwens, Bernard H.F. Weber, Smaragda Kamakari, G. Jane Farrar, Eyal Banin, Elfride De Baere, Jennifer A. Thompson, Adrian Dockery, Marcela D. Mena, Tamar Ben-Yosef, Manar Salameh, Laura Whelan, Tina M. Lamey, L. Ingeborgh van den Born, Ana Fakin, Frans P.M. Cremers, Klaus Rüther, Buhle Ntozini, Sandro Banfi, Claire-Marie Dhaenens, Raj Ramesar, Georg Spital, Osvaldo L. Podhajcer, Heidi Stöhr, Ulrich Kellner, Esmee H. Runhart, Herbert Jägle, John N. De Roach, Kaoru Fujinami, Marta Del Pozo-Valero, Takaaki Hayashi, Juliana Maria Ferraz Sallum, Petra Liskova, Terri L. McLaren, Karsten Hufendiek, Marianthi Karali, Stéphanie S. Cornelis, Sabine Defoort, Ymkje M. Hettinga, Francesca Simonelli, Alaa AlTabishi, Mubeen Khan, Caroline Thuillier, Anna Matynia, Carmen Ayuso, Ketan Mishra, Mariana Vallim Salles, Ian M. MacDonald, Aurore Devos, and Rianne Miller
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Genetics ,0303 health sciences ,Sequence analysis ,Genomics ,Biology ,medicine.disease ,DNA sequencing ,Stargardt disease ,03 medical and health sciences ,Exon ,0302 clinical medicine ,Missing heritability problem ,030221 ophthalmology & optometry ,medicine ,Coding region ,Gene ,030304 developmental biology - Abstract
Missing heritability in human diseases represents a major challenge. Although whole-genome sequencing enables the analysis of coding and non-coding sequences, substantial costs and data storage requirements hamper its large-scale use to (re)sequence genes in genetically unsolved cases. The ABCA4 gene implicated in Stargardt disease (STGD1) has been studied extensively for 22 years, but thousands of cases remained unsolved. Therefore, single molecule molecular inversion probes were designed that enabled an automated and cost-effective sequence analysis of the complete 128-kb ABCA4 gene. Analysis of 1,054 unsolved STGD and STGD-like probands resulted in bi-allelic variations in 448 probands. Twenty-seven different causal deep-intronic variants were identified in 117 alleles. Based on in vitro splice assays, the 13 novel causal deep-intronic variants were found to result in pseudo-exon (PE) insertions (n=10) or exon elongations (n=3). Intriguingly, intron 13 variants c.1938-621G>A and c.1938-514G>A resulted in dual PE insertions consisting of the same upstream, but different downstream PEs. The intron 44 variant c.6148-84A>T resulted in two PE insertions that were accompanied by flanking exon deletions. Structural variant analysis revealed 11 distinct deletions, two of which contained small inverted segments. Uniparental isodisomy of chromosome 1 was identified in one proband. Integrated complete gene sequencing combined with transcript analysis, identified pathogenic deep-intronic and structural variants in 26% of bi-allelic cases not solved previously by sequencing of coding regions. This strategy serves as a model study that can be applied to other inherited diseases in which only one or a few genes are involved in the majority of cases.
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- 2019
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24. Integrated Interleaved Boost LLC Resonant DC-DC Converter with Voltage Quadrupler Rectifier Circuit for PV Power Systems
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Muhammad Jabbar, Asif Rehman, Shahid Iqbal, and Muhammad Mubeen Khan
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Computer science ,business.industry ,Ripple ,Electrical engineering ,Hardware_PERFORMANCEANDRELIABILITY ,computer.software_genre ,Simulation software ,Rectifier ,Boost converter ,Hardware_INTEGRATEDCIRCUITS ,Power MOSFET ,business ,computer ,Pulse-width modulation ,Electronic circuit ,Voltage - Abstract
In this paper an integrated interleaved Boost-LLC resonant dc-dc converter with voltage quadrupler circuit is proposed for PV power system. It is composed on interleaved boost converter and a full bridge LLC circuit. Voltage Quadrupler circuit is used at the secondary side to boost the secondary side voltages. The operational principal of proposed circuit and its main characteristics such as input current ripple, zero voltage switching (ZVS) and gain are also presented in this paper. The converter has high gain & high power conversion efficiency with less current ripples & voltage stresses. Power MOSFETs are used as switches and proposed scheme is compared with the existing conventional converter circuits. This proposed IIB-LLC-VQ converter with 40-60V input voltage and 400V output voltages is simulated using ORCAD PSPICE simulation software and results are presented in this paper.
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- 2019
25. Association of Pretransplant Renal Function With Liver Graft and Patient Survival After Liver Transplantation in Patients With Nonalcoholic Steatohepatitis
- Author
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Molnar, Miklos Z., Joglekar, Kiran, Jiang, Yu, Cholankeril, George, Abdul, Mubeen Khan Mohammed, Kedia, Satish, Gonzalez, Humberto C., Ahmed, Aijaz, Singal, Ashwani, Bhamidimarri, Kalyan Ram, Aithal, Guruprasad Padur, Duseja, Ajay, Wong, Vincent Wai-Sun, Gulnare, Agayeva, Puri, Puneet, Nair, Sathees, Eason, James D., and Satapathy, Sanjaya K.
- Subjects
surgical procedures, operative ,Nonalcoholic steatohepatitis, liver transplantation, graft loss, mortality, renal function ,digestive system diseases - Abstract
Background: Nonalcoholic Steatohepatitis(NASH) is one of the top three indications for liver transplantation in western countries. It is unknown whether renal dysfunction at the time of liver transplantation has any effect on post-liver transplantation outcomes in recipients with NASH.Methods: From the United Network for Organ Sharing-Standard Transplant Analysis and Research(UNOS-STAR) dataset, we identified 4,088 NASH recipients who received deceased donor liver transplant. We divided our recipients a priori into three categories: Group I with estimated glomerular filtration rate (eGFR)
- Published
- 2019
26. Cost-effective molecular inversion probe-based ABCA4 sequencing reveals deep-intronic variants in Stargardt disease
- Author
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Sem Bakker, Sabine Defoort, Eline Manders, Maartje van de Vorst, Mubeen Khan, Muhammad Imran Khan, Christian Gilissen, Duaa Elmelik, Frans P.M. Cremers, Ronny Derks, Aurore Devos, Felix Grassmann, Bernhard H. F. Weber, Claire Marie Dhaenens, Heidi Stöhr, Isabelle Meunier, Stéphanie S. Cornelis, Kornelia Neveling, Bernard Puech, and Heidi L. Schulz
- Subjects
Sequence analysis ,RNA Splicing ,DNA Mutational Analysis ,ABCA4 ,Biology ,Molecular Inversion Probe ,DNA sequencing ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,03 medical and health sciences ,Exon ,All institutes and research themes of the Radboud University Medical Center ,Germany ,Genetics ,medicine ,Humans ,Stargardt Disease ,splice ,Genetic Predisposition to Disease ,Genetics (clinical) ,Alleles ,Genetic Association Studies ,030304 developmental biology ,0303 health sciences ,030305 genetics & heredity ,Other Research Radboud Institute for Health Sciences [Radboudumc 0] ,Computational Biology ,High-Throughput Nucleotide Sequencing ,Molecular Sequence Annotation ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Exons ,medicine.disease ,Introns ,Pedigree ,Stargardt disease ,Molecular Probes ,RNA splicing ,Mutation ,biology.protein ,ATP-Binding Cassette Transporters - Abstract
Purpose Stargardt disease (STGD1) is caused by biallelic mutations in ABCA4, but many patients are genetically unsolved due to insensitive mutation-scanning methods. We aimed to develop a cost-effective sequencing method for ABCA4 exons and regions carrying known causal deep-intronic variants. Methods Fifty exons and 12 regions containing 14 deep-intronic variants of ABCA4 were sequenced using double-tiled single molecule Molecular Inversion Probe (smMIP)-based next-generation sequencing. DNAs of 16 STGD1 cases carrying 29 ABCA4 alleles and of four healthy persons were sequenced using 483 smMIPs. Thereafter, DNAs of 411 STGD1 cases with one or no ABCA4 variant were sequenced. The effect of novel noncoding variants on splicing was analyzed using in vitro splice assays. Results Thirty-four ABCA4 variants previously identified in 16 STGD1 cases were reliably identified. In 155/411 probands (38%), two causal variants were identified. We identified 11 deep-intronic variants present in 62 alleles. Two known and two new noncanonical splice site variants showed splice defects, and one novel deep-intronic variant (c.4539+2065C>G) resulted in a 170-nt mRNA pseudoexon insertion (p.[Arg1514Lysfs*35,=]). Conclusions smMIPs-based sequence analysis of coding and selected noncoding regions of ABCA4 enabled cost-effective mutation detection in STGD1 cases in previously unsolved cases.
- Published
- 2019
27. Identification and Analysis of Genes Associated with Inherited Retinal Diseases
- Author
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Zeinab Fadaie, Susanne Roosing, Stéphanie S. Cornelis, Mubeen Khan, and Frans P.M. Cremers
- Subjects
0303 health sciences ,Genetic heterogeneity ,In silico ,030305 genetics & heredity ,Disease ,Computational biology ,Biology ,Molecular diagnostics ,Disease gene identification ,MIMB ,DNA sequencing ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,03 medical and health sciences ,Stem cell ,Gene ,030304 developmental biology - Abstract
Item does not contain fulltext Inherited retinal diseases (IRDs) display a very high degree of clinical and genetic heterogeneity, which poses challenges in finding the underlying defects in known IRD-associated genes and in identifying novel IRD-associated genes. Knowledge on the molecular and clinical aspects of IRDs has increased tremendously in the last decade. Here, we outline the state-of-the-art techniques to find the causative genetic variants, with special attention for next-generation sequencing which can combine molecular diagnostics and retinal disease gene identification. An important aspect is the functional assessment of rare variants with RNA and protein effects which can only be predicted in silico. We therefore describe the in vitro assessment of putative splice defects in human embryonic kidney cells. In addition, we outline the use of stem cell technology to generate photoreceptor precursor cells from patients' somatic cells which can subsequently be used for RNA and protein studies. Finally, we outline the in silico methods to interpret the causality of variants associated with inherited retinal disease and the registry of these variants.
- Published
- 2019
28. Primary Intention Wound Healing and Esthetic Restoration in a Lacerated Lip Wound: The Hidden Drama, the Dynamics of Healing Process and Unanticipated Clinical Outcomes
- Author
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Vijaylakshmi Kr, Mubeen Khan, and Abhishek Singh Nayyar
- Subjects
030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Psychotherapist ,Process (engineering) ,Computer science ,030212 general & internal medicine ,General Medicine ,Primary intention wound healing ,Drama - Published
- 2018
29. Modeling and design of low-cost automatic self cleaning mechanism for standalone micro PV systems
- Author
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Muhammad Mubeen Khan, Anila Kousar, Yehia Massoud, Muhammad Abbas, Mehboob Alam, S.H. M Jafri, and Muhammad Umar Khan
- Subjects
Power loss ,Renewable Energy, Sustainability and the Environment ,Computer science ,business.industry ,020209 energy ,Photovoltaic system ,Energy Engineering and Power Technology ,02 engineering and technology ,Solar energy ,Renewable energy ,020401 chemical engineering ,Self cleaning ,Performance comparison ,0202 electrical engineering, electronic engineering, information engineering ,Modeling and design ,0204 chemical engineering ,business ,Process engineering ,Electrical efficiency - Abstract
Renewable energy with adequate utilization can quickly contribute towards the human development and economic sustainability of a country. Solar energy shares a major portion of renewable energy resources and is rapidly becoming a reliable and affordable solution to overcome energy crisis in underdeveloped countries. The solar Photovoltaic (PV) module technology is steadily improving with fast demand from different sectors ranging from home, office, agriculture and industries. The environmental effects on the modules in the form of dust accumulation in countries with high irradiance severely affect energy transmittance and further adds to the overall power loss. The low-cost micro PV systems ( ≪ 5 kW) offered in these countries are further effected by the lack of autonomous cleaning system, resulting in significant drop in the power efficiency. Here, we have developed an Automatic Self Cleaning Mechanism (ASCM), which is cost-effective, efficient and only accounts for 10 - 15 % of the actual installation cost of the PV module. The experimental performance comparison of ASCM shows a 35 % enhancement in the output efficiency by avoiding the impact of solar degradation without its use. The designed solution provides an affordable, low-cost automated self cleaning mechanism for micro PV modules.
- Published
- 2021
30. Intramuscular Vascular Malformation of Masseter Muscle–A Rare Entity
- Author
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Bettadahalli Thimmaiah Kavya, Mubeen Khan, and K R Vijayalakshmi
- Subjects
medicine.medical_specialty ,business.industry ,Vascular malformation ,Arteriovenous malformation ,General Medicine ,medicine.disease ,Masseter muscle ,Lesion ,Lymphatic system ,medicine ,Radiology ,Presentation (obstetrics) ,Abnormality ,Stage (cooking) ,medicine.symptom ,business - Abstract
Facial vascular malformations can cause dental emergencies that result in fatal or life-threatening and disfiguring situations. A knowledge of vascular malformation, its clinical presentation and its complications can prevent iatrogenically related accidents and minimize potential spontaneous crisis for the patient in the dental clinic. A vascular malformation (VM) is a morphogenetic abnormality of blood and/or lymphatic vessels with normal ultra-structural characteristics and endothelial hyperplasia. It results from a developmental arrest after the endothelial stage of embryologic vascular development contrary to hemangiomas, which appear to be a failure of differentiation at the endothelial stage. VM has a normal endothelial cell growth cycle that affects the veins, the capillaries and lymphatics and they do not involute. Intramuscular vascular malformations are uncommon tumors in the head and neck, although masseter muscle is the most common site, accounting for approximately 5% of all intramuscular vascular malformations in the head and neck region. Because of the rarity of these tumors, their deep location and unfamiliar presentation, inaccurate preoperative diagnosis and inappropriate treatment planning are common problems. The present report describes intramuscular arteriovenous malformation of masseter are presented highlighting the typical clinical presentation with MRI which should alert the dental physician to the possibility of such a lesion.
- Published
- 2016
31. Radiographic manifestations of teeth and jaw bones in chronic renal failure patients: A longitudinal study
- Author
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Shivakumar Ganiga Channaiah, Mubeen Khan, Jasmeet Singh, Puja Rai, Sridhar Reddy Erugula, and Mathew Tharakan
- Subjects
lcsh:Medical physics. Medical radiology. Nuclear medicine ,medicine.medical_specialty ,Longitudinal study ,Pulpal calcifications ,Radiography ,lcsh:R895-920 ,pulpal calcifications ,jaw bones ,renal osteodystrophy ,Internal medicine ,Chronic renal failure ,Medicine ,Radiology, Nuclear Medicine and imaging ,Renal osteodystrophy ,General Dentistry ,business.industry ,orthopantomograph ,Diagnostic marker ,medicine.disease ,Surgery ,lcsh:RK1-715 ,Stomatognathic system ,Otorhinolaryngology ,lcsh:Dentistry ,business ,Stage iv - Abstract
Introduction: Chronic renal failure (CRF) is an important health problem worldwide with a tendency of annual progression. Renal failure could alter the balance of the stomatognathic system, thus conditioning the prevalence of oral diseases at its different stages. Researchers estimate that up to 90% of renal patients show oral manifestations and a wide range of bony anomalies accounting for 92% of the patients. Aims and Objectives: The aim and objective of this study was to evaluate radiographic manifestations in CRF patients and compare the findings between the stages of CRF. Materials and Methods: A longitudinal study on fifty CRF patients was conducted. Patients were divided into three stages depending on the severity of renal failure. Orthopantomograph was taken for all the subjects. Results: The study showed that 88% of the study group had positive radiographic findings. Stage IV renal failure patients had more severe manifestations as compared to Stages II and III. Conclusion: Majority of the patients had positive radiographic findings which can be one of the diagnostic markers in CRF patients.
- Published
- 2016
32. Gorlin-Goltz syndrome: A rare case report
- Author
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Preeti Rajguru, K R Vijayalakshmi, and Mubeen Khan
- Subjects
Medulloblastoma ,Pathology ,medicine.medical_specialty ,Basal Cell Nevus Syndrome ,Nevoid basal-cell carcinoma syndrome ,030206 dentistry ,Disease ,Biology ,medicine.disease ,Penetrance ,Dermatology ,Falx cerebri ,stomatognathic diseases ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,medicine ,Expressivity (genetics) ,Calcification - Abstract
Gorlin-Goltz syndrome (GGS) is a rare genetic disease that is transmitted as an autosomal-dominant trait showing high level of penetrance and varying expressivity affecting multiple systems of the body. Characteristic clinical manifestations include the presence of multiple basal cell carcinomas, odontogenic keratocysts of the jaws, palmar/plantar pits and calcification of falx cerebri. Early diagnosis of GGS is of great importance due to susceptibility of affected individuals to multiple neoplasms of skin and brain (medulloblastoma) in an early age; life expectancy in GGS is not significantly altered, but morbidity from complications can be substantial. Dentist plays a crucial role in early diagnosis, which prevents recurrence and provides better survival rates from the existent diseases. We are reporting a rare case of GGS in a 14-year-old girl who visited our institution with characteristic clinical, radiological and histological features.
- Published
- 2016
33. Identification and Analysis of Genes Associated with Inherited Retinal Diseases
- Author
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Mubeen, Khan, Zeinab, Fadaie, Stéphanie S, Cornelis, Frans P M, Cremers, and Susanne, Roosing
- Subjects
Genetic Diseases, Inborn ,Inheritance Patterns ,Chromosome Mapping ,Genetic Variation ,Genomics ,Pedigree ,Phenotype ,Molecular Diagnostic Techniques ,Retinal Diseases ,Databases, Genetic ,Animals ,Humans ,Genetic Predisposition to Disease ,Registries ,Genetic Association Studies ,Genome-Wide Association Study - Abstract
Inherited retinal diseases (IRDs) display a very high degree of clinical and genetic heterogeneity, which poses challenges in finding the underlying defects in known IRD-associated genes and in identifying novel IRD-associated genes. Knowledge on the molecular and clinical aspects of IRDs has increased tremendously in the last decade. Here, we outline the state-of-the-art techniques to find the causative genetic variants, with special attention for next-generation sequencing which can combine molecular diagnostics and retinal disease gene identification. An important aspect is the functional assessment of rare variants with RNA and protein effects which can only be predicted in silico. We therefore describe the in vitro assessment of putative splice defects in human embryonic kidney cells. In addition, we outline the use of stem cell technology to generate photoreceptor precursor cells from patients' somatic cells which can subsequently be used for RNA and protein studies. Finally, we outline the in silico methods to interpret the causality of variants associated with inherited retinal disease and the registry of these variants.
- Published
- 2018
34. Marijuana is not associated with progression of hepatic fibrosis in liver disease: a systematic review and meta-analysis
- Author
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Khwaja F. Haq, Mubeen Khan Mohammed Abdul, Lin Wu, Zubair Khan, Donghee Kim, Muhammad Ali Khan, Shantanu Solanki, Neha D Shah, Muhammad T. Farooqui, George Cholankeril, Aijaz Ahmed, and Andrew A. Li
- Subjects
Adult ,Liver Cirrhosis ,Male ,medicine.medical_specialty ,Marijuana Abuse ,Time Factors ,HIV Infections ,Marijuana Smoking ,Comorbidity ,Chronic liver disease ,Gastroenterology ,Risk Assessment ,Article ,03 medical and health sciences ,Liver disease ,0302 clinical medicine ,Fibrosis ,Non-alcoholic Fatty Liver Disease ,Risk Factors ,Internal medicine ,Nonalcoholic fatty liver disease ,Prevalence ,Medicine ,Humans ,Hepatology ,business.industry ,Coinfection ,Hepatitis C and HIV coinfection ,Odds ratio ,Middle Aged ,medicine.disease ,Prognosis ,Hepatitis C ,030220 oncology & carcinogenesis ,Meta-analysis ,Disease Progression ,030211 gastroenterology & hepatology ,Female ,business ,Hepatic fibrosis - Abstract
BACKGROUND: An estimated 22 million adults use marijuana in the USA. The role of marijuana in the progression of hepatic fibrosis remains unclear. AIMS: We carried out a systematic review and meta-analysis to evaluate the impact of marijuana on prevalence and progression of hepatic fibrosis in chronic liver disease. PATIENTS AND METHODS: We searched several databases from inception through 10 November 2017 to identify studies evaluating the role of marijuana in chronic liver disease. Our main outcome of interest was prevalence/progression of hepatic fibrosis. Adjusted odds ratios (ORs) and hazards ratios (HRs) were pooled and analyzed using random-effects model. RESULTS: Nine studies with 5 976 026 patients were included in this meta-analysis. Prevalence of hepatic fibrosis was evaluated in nonalcoholic fatty liver disease (NAFLD), hepatitis C virus (HCV), and hepatitis C and HIV coinfection by two, four, and one studies. Progression of hepatic fibrosis was evaluated by two studies. Pooled OR for prevalence of fibrosis was 0.91 (0.72–1.15), I(2) = 75%. On subgroup analysis, pooled OR among NAFLD patients was 0.80 (0.75–0.86), I(2) = 0% and pooled OR among HCV patients was 1.96 (0.78–4.92), I(2) = 77%. Among studies evaluating HR, pooled HR for progression of fibrosis in HCV–HIV coinfected patients was 1.03 (0.96–1.11), I(2) = 0%. CONCLUSION: Marijuana use did not increase the prevalence or progression of hepatic fibrosis in HCV and HCV–HIV-coinfected patients. On the contrary, we noted a reduction in the prevalence of NAFLD in marijuana users. Future studies are needed to further understand the therapeutic impact of cannabidiol-based formulations in the management of NAFLD.
- Published
- 2018
35. Association of Pretransplant Renal Function With Liver Graft and Patient Survival After Liver Transplantation in Patients With Nonalcoholic Steatohepatitis
- Author
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James D. Eason, Humberto C. Gonzalez, Guruprasad P. Aithal, Agayeva Gulnare, Vincent Wai-Sun Wong, Miklos Z. Molnar, Kalyan Ram Bhamidimarri, Satish Kedia, Kiran Joglekar, Ajay Duseja, Mubeen Khan Mohammed Abdul, Ashwani K. Singal, George Cholankeril, Satheesh Nair, Aijaz Ahmed, Sanjaya K. Satapathy, Yu Jiang, and Puneet Puri
- Subjects
Male ,medicine.medical_specialty ,medicine.medical_treatment ,Renal function ,Datasets as Topic ,030230 surgery ,Liver transplantation ,Lower risk ,Kidney ,Gastroenterology ,Risk Assessment ,03 medical and health sciences ,Liver disease ,0302 clinical medicine ,Interquartile range ,Non-alcoholic Fatty Liver Disease ,Renal Dialysis ,Risk Factors ,Internal medicine ,Medicine ,Humans ,Kidney surgery ,Renal replacement therapy ,Aged ,Transplantation ,Hepatology ,business.industry ,Graft Survival ,Middle Aged ,medicine.disease ,Kidney Transplantation ,Survival Analysis ,United States ,Liver Transplantation ,Treatment Outcome ,Preoperative Period ,Kidney Failure, Chronic ,030211 gastroenterology & hepatology ,Surgery ,Female ,business ,Follow-Up Studies ,Glomerular Filtration Rate - Abstract
Nonalcoholic steatohepatitis (NASH) is one of the top 3 indications for liver transplantation (LT) in Western countries. It is unknown whether renal dysfunction at the time of LT has any effect on post-LT outcomes in recipients with NASH. From the United Network for Organ Sharing-Standard Transplant Analysis and Research data set, we identified 4088 NASH recipients who received deceased donor LT. We divided our recipients a priori into 3 categories: group 1 with estimated glomerular filtration rate (eGFR)
- Published
- 2018
36. ABCA4 midigenes reveal the full splice spectrum of all reported noncanonical splice site variants in Stargardt disease
- Author
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Valerie Richelle, L. Ingeborgh van den Born, Stéphanie S. Cornelis, Alejandro Garanto, Silvia Albert, Rob W.J. Collin, Duaa Elmelik, Dorien Lugtenberg, Riccardo Sangermano, Frans P.M. Cremers, Mubeen Khan, and Raheel Qamar
- Subjects
0301 basic medicine ,Bacterial artificial chromosome ,Intron ,Method ,Context (language use) ,Computational biology ,030105 genetics & heredity ,Biology ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,03 medical and health sciences ,Exon ,030104 developmental biology ,All institutes and research themes of the Radboud University Medical Center ,RNA splicing ,Genetics ,Human genome ,splice ,Gene ,Genetics (clinical) - Abstract
Stargardt disease is caused by variants in the ABCA4 gene, a significant part of which are noncanonical splice site (NCSS) variants. In case a gene of interest is not expressed in available somatic cells, small genomic fragments carrying potential disease-associated variants are tested for splice abnormalities using in vitro splice assays. We recently discovered that when using small minigenes lacking the proper genomic context, in vitro results do not correlate with splice defects observed in patient cells. We therefore devised a novel strategy in which a bacterial artificial chromosome was employed to generate midigenes, splice vectors of varying lengths (up to 11.7 kb) covering almost the entire ABCA4 gene. These midigenes were used to analyze the effect of all 44 reported and three novel NCSS variants on ABCA4 pre-mRNA splicing. Intriguingly, multi-exon skipping events were observed, as well as exon elongation and intron retention. The analysis of all reported NCSS variants in ABCA4 allowed us to reveal the nature of aberrant splicing events and to classify the severity of these mutations based on the residual fraction of wild-type mRNA. Our strategy to generate large overlapping splice vectors carrying multiple exons, creating a toolbox for robust and high-throughput analysis of splice variants, can be applied to all human genes.
- Published
- 2018
37. Identification and Rescue of Splice Defects Caused by Two Neighboring Deep-Intronic ABCA4 Mutations Underlying Stargardt Disease
- Author
-
Riccardo Sangermano, Jana Zernant, Nathalie M. Bax, Mubeen Khan, Silvia Albert, Alejandro Garanto, Frans P.M. Cremers, Rando Allikmets, Winston Lee, Carel B. Hoyng, and Rob W.J. Collin
- Subjects
0301 basic medicine ,Sequence analysis ,030105 genetics & heredity ,Biology ,medicine.disease_cause ,Article ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,Macular Degeneration ,03 medical and health sciences ,All institutes and research themes of the Radboud University Medical Center ,Genetics ,medicine ,Humans ,Stargardt Disease ,Coding region ,Computer Simulation ,splice ,RNA, Messenger ,Enhancer ,Gene ,Alleles ,Genetics (clinical) ,Mutation ,Base Sequence ,Exons ,Oligonucleotides, Antisense ,medicine.disease ,Introns ,Stargardt disease ,030104 developmental biology ,RNA splicing ,ATP-Binding Cassette Transporters ,RNA Splice Sites ,Photoreceptor Cells, Vertebrate - Abstract
Sequence analysis of the coding regions and splice site sequences in inherited retinal diseases is not able to uncover ∼40% of the causal variants. Whole-genome sequencing can identify most of the non-coding variants, but their interpretation is still very challenging, in particular when the relevant gene is expressed in a tissue-specific manner. Deep-intronic variants in ABCA4 have been associated with autosomal-recessive Stargardt disease (STGD1), but the exact pathogenic mechanism is unknown. By generating photoreceptor precursor cells (PPCs) from fibroblasts obtained from individuals with STGD1, we demonstrated that two neighboring deep-intronic ABCA4 variants (c.4539+2001G>A and c.4539+2028C>T) result in a retina-specific 345-nt pseudoexon insertion (predicted protein change: p.Arg1514Leufs∗36), likely due to the creation of exonic enhancers. Administration of antisense oligonucleotides (AONs) targeting the 345-nt pseudoexon can significantly rescue the splicing defect observed in PPCs of two individuals with these mutations. Intriguingly, an AON that is complementary to c.4539+2001G>A rescued the splicing defect only in PPCs derived from an individual with STGD1 with this but not the other mutation, demonstrating the high specificity of AONs. In addition, a single AON molecule rescued splicing defects associated with different neighboring mutations, thereby providing new strategies for the treatment of persons with STGD1. As many genes associated with human genetic conditions are expressed in specific tissues and pre-mRNA splicing may also rely on organ-specific factors, our approach to investigate and treat splicing variants using differentiated cells derived from individuals with STGD1 can be applied to any tissue of interest.
- Published
- 2018
38. Decreased trend in hospital mortality from pancreatic cancer despite increase in number of hospital admissions
- Author
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Douglas B. Evans, Mubeen Khan Mohammed Abdul, Nalini M Guda, Kanav Sharma, Sanjay Bhandari, and Will Hollabaugh
- Subjects
Male ,Multivariate analysis ,Palliative care ,lcsh:Medicine ,0302 clinical medicine ,Medicine and Health Sciences ,Hospital Mortality ,lcsh:Science ,Aged, 80 and over ,Multidisciplinary ,Middle Aged ,Hospitals ,Hospitalization ,Oncology ,030220 oncology & carcinogenesis ,Insurance status ,Engineering and Technology ,030211 gastroenterology & hepatology ,Female ,Lower mortality ,Management Engineering ,Research Article ,Adult ,medicine.medical_specialty ,Adolescent ,Death Rates ,Surgical and Invasive Medical Procedures ,03 medical and health sciences ,Pancreatic Cancer ,Insurance ,Digestive System Procedures ,Population Metrics ,Diagnostic Medicine ,Internal medicine ,Pancreatic cancer ,Gastrointestinal Tumors ,medicine ,Cancer Detection and Diagnosis ,Humans ,Aged ,Hospitalizations ,Risk Management ,In hospital mortality ,Population Biology ,business.industry ,lcsh:R ,Cancers and Neoplasms ,Biology and Life Sciences ,medicine.disease ,Pancreatic Neoplasms ,Health Care ,Whipple Procedure ,Health Care Facilities ,Charlson comorbidity index ,lcsh:Q ,business ,Index hospitalization - Abstract
BACKGROUND AND AIM Pancreatic cancer is one of the common cancers in US and is associated with high mortality and morbidity. The objectives of our study were to look at the recent trends in the number of hospitalizations with pancreatic cancer. METHODS We identified patients with a discharge diagnosis of pancreatic cancer in the National Inpatient Sample from 2007 to 2011 using International Classification of Diseases-Clinical Modification, 9th revision (ICD-9-CM) codes. We looked at the yearly trend in the hospitalizations with pancreatic cancer and the outcomes which included length of stay (LOS), hospital charges and in-hospital mortality. We also performed multivariate analysis to look for the predictors of mortality. RESULTS There were 450, 414 patients with discharge diagnosis of pancreatic cancer. There was 18% increase in hospitalizations with pancreatic cancer in 2011 compared to 2007. Most of the patients were Caucasian (63%) with the mean age of 68 ± 0.14 years, had Medicare (57%) as primary insurance, were from Southern region (35%) and had higher Charlson Comorbidity Index (CCI) (87% with CCI > = 5). 6% underwent Whipple's procedure in the index hospitalization. After the adjustment for inflation, the mean hospital charges increased from $ 47,331 in 20007 to $ 53, 854 in 2011 (p = 0.01). LOS decreased from 7.31 ± 0.11 days in 2007 to 6.70 ± 0.09 days in 2011 (
- Published
- 2017
39. Colposcopy: Gynecological vision in viewing oral lesions
- Author
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UD Bafna, Abhishek Singh Nayyar, HC Gayitri, Mubeen Khan, and Ahmed Siddique
- Subjects
Microbiology (medical) ,Adult ,Male ,medicine.medical_specialty ,Epithelial dysplasia ,Biopsy ,vascular pattern ,lcsh:QR1-502 ,Physical examination ,Sensitivity and Specificity ,lcsh:Microbiology ,Pathology and Forensic Medicine ,Biopsy Site ,epithelial dysplasia ,medicine ,Carcinoma ,lcsh:Pathology ,Humans ,Oral mucosa ,Leukoplakia ,Colposcopy ,histopathological ,medicine.diagnostic_test ,business.industry ,Mouth Mucosa ,General Medicine ,Middle Aged ,potentially malignant epithelial lesions ,medicine.disease ,Dermatology ,Surgery ,medicine.anatomical_structure ,Female ,Mouth Neoplasms ,Leukoplakia, Oral ,business ,lcsh:RB1-214 - Abstract
Context: The diagnosis of malignant and potentially malignant epithelial lesions of the oral mucosa cannot be based solely on clinical findings. The histologic evaluation of a representative biopsy specimen thus becomes necessary. The site for biopsy however is always a subjective choice that sometimes raises doubts about its representativeness. So far, no simple and reliable method is available for the selection of the most appropriate area for biopsy. Colposcopy is helpful in the selection of these sites of epithelial dysplasia depending upon the vascular patterns. Aims: This study was planned to assess the role of Colposcopic examination in the selection of biopsy site in patients with varying grades of oral epithelial dysplasia at various sites. Settings and Design: One hundred and eighty patients between the ages of 30 and 60 years clinically diagnosed with leukoplakia and carcinoma buccal mucosa were included in the study. Materials and Methods: For each of the subjects, a thorough clinical examination followed by Colposcopic assessment was carried out for the selection of biopsy site from the involved mucosa. The histopathological findings were then compared in the two cases and results analyzed. Statistical Analysis Used: The statistical analysis was performed using a paired t-test. Results: In our study, sensitivity and specificity for the selection of biopsy site by Colposcopic examination was found to be higher for leukoplakia than for carcinoma buccal mucosa. Conclusions: It was concluded that Colposcopic examination was found to be significant in the selection of biopsy site for leukoplakia while clinical criterion was found to be more appropriate for carcinoma buccal mucosa cases.
- Published
- 2014
40. Phenytoin, folic acid and gingival enlargement: Breaking myths
- Author
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Mubeen Khan, K R Vijayalakshmi, B Suman, GT Subhas, M Anitha, Abhishek Singh Nayyar, and B Nataraju
- Subjects
Phenytoin ,medicine.medical_specialty ,gingival enlargement ,Orthodontics ,Neurological disorder ,Gastroenterology ,Epilepsy ,folic acid ,Internal medicine ,medicine ,Adjuvant therapy ,Breakthrough seizures ,Adverse effect ,business.industry ,Incidence (epidemiology) ,phenytoin ,medicine.disease ,Gingival enlargement ,lcsh:RK1-715 ,Regimen ,Anesthesia ,lcsh:Dentistry ,Periodontics ,epilepsy ,Original Article ,Oral Surgery ,business ,medicine.drug - Abstract
Background: Epilepsy is described as a chronic neurological disorder characterized by recurrent seizures of cerebral origin, presenting with episodes of sensory, motor or autonomic phenomenon with or, without loss of consciousness. A recent meta-analysis of published and unpublished studies puts an overall prevalence rate of epilepsy in India at 5.59 per 1,000 populations.There have been studies that report clinical benefits of the use of folic acid as an adjuvant to the anti-epileptic therapy in the prevention of anti-epileptic drug induced gingival enlargement. However, studies conducted in the past have also reported precipitation of epileptic attacks in patients on folic acid adjuvant therapy due to fall in sera levels of phenytoin due to drug interactions. The study was planned to investigate the association of phenytoin induced gingival enlargement and sera levels of folic acid in epileptic patients on phenytoin therapy so as to justify the use of folic acid as a routine adjuvant to the usual anti-epileptic therapy to prevent this inevitable adverse effect without destabilizing the ongoing regimen leading to the precipitation of seizures in an otherwise stable patient (breakthrough seizures). Materials and Methods: A total of 100 patients between the ages 18 and 50 years were clinically diagnosed with epilepsy prior to the start of phenytoin therapy were included based on selection criteria and written informed consents were obtained. Assessment of serum folic acid levels and gingival enlargement was performed prior to the start of and after 1 year of phenytoin therapy. Statistical Analysis Used: The statistical analysis was carried out using t -test and the baseline serum folate levels and the serum folate levels obtained after 1 year of phenytoin therapy were correlated with the respective grades of gingival enlargement using Pearson's coefficient formula. Results: The results of the study confirmed a significant association between low serum folate levels with increasing severity as well as an early onset of phenytoin induced gingival enlargement. Conclusions: The results of the study suggest a higher incidence of gingival enlargement with an early onset and increased severity in phenytoin treated epileptic patients with a positive correlation with falling serum folic acid levels as the duration of the therapy increases.
- Published
- 2014
41. Colposcopy in oral epithelial dysplasia: Seeing the unseen, a pilot study
- Author
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Abhishek Singh Nayyar, Mubeen Khan, Gayitri Holenarasipur Chaluvaiah, Siddique Ahmed, and U. D. Bafna
- Subjects
Adult ,Male ,Epithelial dysplasia ,medicine.medical_specialty ,Pathology ,Biopsy ,vascular pattern ,Context (language use) ,Pilot Projects ,lcsh:RC254-282 ,Biopsy Site ,epithelial dysplasia ,medicine ,Carcinoma ,Humans ,Radiology, Nuclear Medicine and imaging ,Oral mucosa ,Leukoplakia ,Colposcopy ,histopathological ,medicine.diagnostic_test ,business.industry ,Mouth Mucosa ,General Medicine ,Middle Aged ,potentially malignant epithelial lesions ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Dermatology ,medicine.anatomical_structure ,Oncology ,Case-Control Studies ,Female ,Mouth Neoplasms ,Leukoplakia, Oral ,business ,Precancerous Conditions - Abstract
Context: The diagnosis of malignant and potentially malignant epithelial lesions of oral mucosa cannot be based solely on clinical findings. The histologic evaluation of a representative biopsy specimen thus becomes necessary. The site for biopsy, however, is always a subjective choice that sometimes raises doubts about its representativeness. So far, no simple and reliable method is available for the selection of the most appropriate area for biopsy. Colposcopy is helpful in the selection of these sites of epithelial dysplasia depending upon the vascular patterns. Aims: The study was planned to assess the role of colposcopic examination in the selection of biopsy site in patients with varying grades of oral epithelial dysplasia at various sites. Settings and Design: Fifty patients between the ages of 30-60 years clinically diagnosed with leukoplakia and carcinoma buccal mucosa were included in the study. Materials and Methods: For each of the subject, a thorough clinical examination followed by colposcopic assessment was carried out for the selection of biopsy site from the involved mucosa. The histopathological findings were then compared in the two cases and results analyzed. Statistical Analysis Used: The statistical analysis was done using paired t-test. Results: In our study, sensitivity and specificity for the selection of biopsy site by colposcopic examination came out to be higher for leukoplakia than carcinoma buccal mucosa patients. Conclusions: It was concluded that colposcopic examination was found more significant in the selection of biopsy site for leukoplakia patients while clinical criterion was found to be more appropriate for carcinoma buccal mucosa cases.
- Published
- 2014
42. Su1388 IS EUS GUIDED LIVER BIOPSY READY FOR PRIME TIME? YES
- Author
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Mahmoud Bayoumi, Mohammad Ismail, Satheesh Nair, Bilal Ali, Sanjaya K. Satapathy, Mohamad Imam, Faisal Kamal, Shilpa Lingala, Mubeen Khan Mohammed Abdul, and Uzair Ashraf
- Subjects
medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Liver biopsy ,Gastroenterology ,medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,business - Published
- 2018
43. 461 – Another False Alarm: No Good Evidence for an Association Between Proton Pump Inhibitor Use and Dementia
- Author
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Zubair Khan, Khwaja F. Haq, Sehrish Kamal, Shreesh Shrestha, Colin W. Howden, Faisal Kamal, Muhammad Ali Khan, Umair Iqbal, and Mubeen Khan Mohammed Abdul
- Subjects
medicine.medical_specialty ,Hepatology ,medicine.drug_class ,business.industry ,Association (object-oriented programming) ,Gastroenterology ,Proton-pump inhibitor ,medicine.disease ,Internal medicine ,Good evidence ,medicine ,Cardiology ,Dementia ,False alarm ,business - Published
- 2019
44. Review on Clinical Implications of Colposcopy in Oral Squamous Cell Carcinoma: A Practical Approach
- Author
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Abhishek Singh Nayyar, Mubeen Khan, Gayitri HC, Uttam Kumar Bafna, and Siddique Ahmed
- Subjects
Vascular pattern ,Colposcopy ,Potentially malignant epithelial lesions ,Histopathologic ,Epithelial dysplasia ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,lcsh:RC254-282 - Abstract
Background:The diagnosis of malignant and potentially malignant epithelial lesions of the oral mucosa cannot be based solely on clinical findings. Therefore, histologic evaluation of a representative biopsy specimen is necessary. However the site for the biopsy is always a subjective choice that sometimes raises doubts about its representativeness. Colposcopy, a well-known gynecological diagnostic procedure, is helpful in the selection of these epithelial dysplasia areas depending upon the vascular pattern. Hence, this study assesses the role of colposcopic examination in the selectionof biopsy sites for carcinomas of the buccal mucosa.Methods: This study included 30 patients between the ages of 30-60 years who were clinically diagnosed with carcinoma of the buccal mucosa and a control group that consisted of 25 healthy, age-matched individuals. For each subject, a thorough clinical examination followed by colposcopic assessment was performed. The most representative site was selected for biopsy from the involved buccal mucosa. The biopsy specimens that measured 6 mm were obtained by punch biopsy and subjected to histopathologic examination. The histopathologic findings were then compared in the two cases.Results: The sensitivity and specificity of biopsies performed on the basis of clinical criteria was found to be more appropriate compared to biopsies directed through colposcopic examination.Conclusion: From the study, it was concluded that clinical criterion was found to be more appropriate for the selection of biopsy specimens in cases of carcinoma of the buccal mucosa.
- Published
- 2013
45. REGIONAL ANAESTHESIA AND ACUTE PAIN
- Author
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Dragana Unic-Stojanovic, Camilo Año, Alejandro Lucchelli, Gustavo Carradori, Rodriguez Perez Jose Maria, Carla Farré, Carlos E. Lorda, Carolina Henao, Yoram Shapira, Martin McNally, Fauzia Nawaz, Lee Krahe, Fauzia Khan, Michael Burns, Nurdan Özdemir Fatma, Opas Puchissa, Peter Chee Seong Tan, Garcia Rojo Blas, Andrey L. Melnikov Steinar, Anjolie Chhabra, Buzz Shephard, Tomas E. Lambertus, Edgar Omero, Jason Chou, Tobias Piegeler, Jayashree Simha, Susana Pacreu, Athanasia Tsaroucha, Elisabet Andersson, Takashi Suto, Mauro Gili, Valasubramaniam Mahadevan, Miguel Moreno, Aylin Incesu, Pavan Gurha, José Aguirre, Francisco Riberi, Norzalina Esa, Imran Ahmed, V Mehta, Sanoussi Samuela, Richard Minshall, Belen Posso, Hyun Seung Kim, Orozco Montes Javier, Jesús Carazo, Mubeen Khan, Maria E. Interiano, Svetlana Galitzine, Stefano Scalia Catenacci, Raveendranath Wadhwani, Naila Asad, Nicole Naccache, Ralf E. Gebhard, Chaibou M Sani, Eduardo Sadatsune, Rita Jawish, Maria Isabel Vasquez, Dominguez Serrano Nuria, Grant Mills, Francisco Gómez Armenta, Jong-Hun Ji Sang, Rafael Esturi, Senthil Nadarajan, Jamie Vivian, Ömer Yanarates, Vera Tesic, Altun Demet, Shobha Rani, Pablo Lassalle, Argyro Fassoulaki, Ivan Lisnyy, Serdar Kaymak, S. S. Nethra, Ena Miller, Roberto Contreras, Antonio Carlos Shimano, Tanvir Butt, Somi Ramachary Desikan, Gulden Ugur, Bon Nyeo Koo, Jose M. Galbis, Juan Carlos Elvira, William Knox, Gina Votta Velis, Maria Carolina Cabrera Schulmeyer, Yuryy Kuchin, Alexandr Zlotnik, Serena Calcinati, Youn-Woo Lee, Ulrich Johannes Spreng, Bertram Baenziger, Thitima Chinachoti, Coskun Fusun Bozkirli, Howard Palte, Jaime De la Maza, Miriam Estors, Yon Hee Shim, Mercedes Lluch Fernández, Izuru Nose, D. Devikarani, Andeia Andeia Paraskeva, Sirous Momenzadeh, Cezary Kosiñski, Ae Ryoung Lee, Sivendiran Mahalingam, Beatrice Beck-Schimmer, Fatma Nur Kaya, Oguz Kýlýçkaya, Edward R. Mariano, Daniel Abell, Adrian Pearce, Farrukh Afzal, Cheng Ong, Rodrigo Costa, Anuradha Borle, Joao Abrao, Karl Otto Geier, Franco Ravera, Soo Joo Choi, Azlina Abbas Azhar, Soha Bazyar, Abarchi Habibou, Juan Fernández Candil, Fernando Cacheiro, Suzie Ward, Saju Sharafudeen, Luiz Falcao, Agata Kacka, Nicolas Altolaguirre, Ivan Ilic, Guillermo Reeves, Raveenthiran Rasiah, Eduard Stahovskiy, Rajiv Kumar, Akbar Shah Romila, Encarna Miñana, Inmaculada Herrador Montiel, Ravindra Wadhwani, Ji Young Kim, Diego Guardabassi, Hee Pyoung Park, Ji Young Yoo, M. Nuri Deniz, Amlesh Seth, Christopher Pollitt, Cristián Manuello, Jung-Won Hwang, Cleverson R. Fernandes, Shigeru Saito, Binod Gautam, Dusica Vucurevic, Pablo Morgillo, Elialba Cascudo, Hisham Jabbour, Jessica Zavesky, Vasanth Rao Kadam, M. P. S. Lokesh, Asoumane Toudou Nouhou, Jose E. LLopis, Asadollah Saadatniaki, Nicolás Gastón Moreno, Eduardo Cardieri, Franco Frenquelli, Dariush Abtahi, Liliana Suárez Aguilar, Marco Antonio Jogaib, Vescovo Anibal, Yun T. Romy, Tarik Purtuloglu, Cristián Ovalle, Oscar Aguirre, Mohammad Ali, Hanafi Sidik, Evangelina Gagliardo, Seyed Saed Jahanbakhsh, Chee Kean Chen, Edward Kim, Perumal Tamilselvan, P. Siddalingeshwara, Jaime Ordoñez, Raúl Trotta, Virginia Funes, Leonardo Ferraro, Belgin Yavaşcaoğlu Oya Kutlay, Stephan M. Jakob, Bjørgo Ulf E. Kongsgaard, Adriana Demoner, Alessandro Buda, Duck Hwan Choi, Tomasz Lazowwski, Hicham AbouZeid, Maria Tardelli, Young-Tae Jeon, Mabhidli Mduduzi Mashinini, Roberto Flores, Fernando J. Sanchez, Liliana Vaula, Bruno Gatto Chiara, Young Hee Shin, B Stevens, Vegard Dahl, Ludmila Klimchuk, Jung-Hee Rhyu, Steven Gayer, Ulka Paralkar, Carlos Bollini, Ylmazlar Burak Demira, Shu Ching Teo, Aliya Ahmed, Daniel Espada Lahoz, Angela Maria Rios, Hasmizy Bin Muhammad, Gutierrez-Meca Maestre Maria Dolores, Aida Amirzhanova, Oliver Baehre, Nicholas Christelis, Khalil Jabbour, Daniel Rothen, Amisha Burumdayal, Kevin Kline, Scaglioni Maria, Seema Randive, Masaru Tobe, Pablo Ingelmo, Gabriel Cortés, Agzam Zhumadilov, Jean-Marie Parel, Guillermina Harvey, Manee Raksakietisak, Aziza Hussain, Moran Debbie Miller, Aikaterini Melemeni, Jong Bum Choi, Paul F. White, Rodrigo Okubo, Hanuman K. Murthy, Robyn S. Weisman, K. Gunashekar, Blasko Smiljanic, Mariusz Piotrowski, Matthew Irwin, Amarpal Bhalla, Dominguez Ximena, Sani Rachid, Sian Griffiths, Rajeshwari Subramaniam, Maria Patricia Gonzalez, Irimar de Paula Posso, Ana Maria Pagliaro, A.C. Lundgren, Ercan Kurt, Piotr Sarwiñski, Vicente Muedra, Diego García-Girona, Nora Hasiah Idris, Merican Naveenthiran Thevanthiran, Ali Sýzlan, Jairo Moyano, Perrín Turenne Hugo, Fabian Astore, Angkana Luingnateetape, M Dilkes, Eun Park, Mariano Souza, S. S. Harsoor, J. Gregg Melton, Sang-Hwan Do, Magdalena Sinczak, Goran Tockov, Alexandre Takeda, K. Brijesh, George Mathew, C. Kumaresan, José Luis Furno, Brendan Carvalho, Miomir Jovic, Alex Ramsden, Elvan Erhan, Gonzalo M. Rivas, Andres Missair, Aysun Yildiz, Tomasz Lazowski, Ortega Ortega, Gundappa Parameswara, Van Wijk Roelof John, María Angélica Iglesias Tinnirello, Hitoshi Shimada, Kimiko Takekawa, SangMook Lee, Rachel Farmer, Nur Kaya Aysun, Hideaki Obata, Renato Passos, and Jimena Palleiro
- Subjects
Anesthesiology and Pain Medicine ,business.industry ,Anesthesia ,Medicine ,Regional anaesthesia ,business ,Acute pain - Published
- 2012
46. Change in Mortality Trend of Hospitalized Patients with Clostridium Difficile Infection; A National Wide Study
- Author
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Sanjay Bhandari, Mubeen Khan Mohammed Abdul, and Nalini M. Guda
- Subjects
medicine.medical_specialty ,Hepatology ,business.industry ,Hospitalized patients ,Internal medicine ,Gastroenterology ,medicine ,Clostridium difficile ,business ,Surgery - Published
- 2017
47. Evaluation of occlusal splint therapy in temporomandibular joint disorder patients using real-time ultrasonography
- Author
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Arun Dodamani, Shilpa Yalsangi, Deepti Telkar, Mubeen Khan, Anil K Shukla, and swaroop Telkar
- Subjects
musculoskeletal diseases ,Orthodontics ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Ultrasound ,Dentistry ,Physical examination ,General Medicine ,Temporomandibular joint ,Masseter muscle ,medicine.anatomical_structure ,medicine ,Temporomandibular Joint Disorder ,Real time ultrasonography ,business ,Splint (medicine) ,Reduction (orthopedic surgery) - Abstract
Aim: The aim of the present study was to evaluate the effect of occlusal splint therapy by determining the cross-sectional dimension of masseter muscle using ultrasound in patients with temporomandibular joint disc displacement with reduction. Methods: Twenty-seven patients aged between 20 and 40 years were included in the study. A detailed history was obtained, and a comprehensive clinical examination was carried out. Subjective assessment with structured pro forma was performed pre-occlusal and post-occlusal splint therapy. The objective measurement of the bilateral masseter muscle thickness was recorded using real-time ultrasonography before and after splint therapy. Results: The mean ultrasound thickness of the masseter muscle in the pre-clenching state before splint therapy was 9.45 mm (SD 1.39), and the post-clenching state was 13.15 mm (SD 2.23). After splint therapy, the mean thickness in the pre-clenching state was 9.14 mm (SD 1.31), and the post-clenching state was 12.78 mm (SD 2.23; P
- Published
- 2010
48. Mo1400 - Comparison of Regimens for Hepatitis C Genotype 3 Treatment-Experienced Patients: A Systematic Review and Meta-Analysis
- Author
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Lin Wu, Bilal Ali, Muhammad T. Farooqui, Andrew A. Li, Muhammad Ali Khan, Shreesh Shrestha, George Cholankeril, Aijaz Ahmed, Mubeen Khan Mohammed Abdul, Zubair Khan, and Thomas A. Hahambis
- Subjects
medicine.medical_specialty ,Hepatology ,business.industry ,Diabetes mellitus ,Internal medicine ,Meta-analysis ,Genotype ,Gastroenterology ,medicine ,Hepatitis C ,medicine.disease ,business ,Treatment experienced - Published
- 2018
49. Mo1646 - Ursodeoxycholic Acid (UDCA) for the Prevention of Cholelithiasis after Bariatric Surgery: A Systematic Review and Meta-Analysis
- Author
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Khwaja F. Haq, Faisal Kamal, Scott Duncan, Timothy Chen, Shantanu Solanki, Mubeen Khan Mohammed Abdul, Zubair Khan, Shreesh Shrestha, Muhammad Ali Khan, Colin W. Howden, and Stephen J. Soufleris
- Subjects
medicine.medical_specialty ,Hepatology ,business.industry ,Gastroenterology ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Ursodeoxycholic acid ,0104 chemical sciences ,Meta-analysis ,Internal medicine ,medicine ,0210 nano-technology ,business ,medicine.drug - Published
- 2018
50. Congenital insensitivity to pain: Case report of a rare entity
- Author
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Mubeen Khan, Swati Dahiya, and K R Vijayalakshmi
- Subjects
medicine.medical_specialty ,business.industry ,lcsh:RJ1-570 ,Rare entity ,lcsh:Pediatrics ,lcsh:RL1-803 ,medicine.disease ,Dermatology ,oral manifestations ,Congenital ,lcsh:Dermatology ,medicine ,Noxious stimulus ,pain ,business ,Pathological ,Congenital insensitivity to pain - Abstract
Hereditary sensory and autonomic neuropathies (HSANs) are a group of disorders characterized by insensitivity to noxious stimuli and autonomic dysfunction, associated with pathological abnormalities of the peripheral nerves. Five types of HSAN have been reported in literature, out of which Type V known as congenital insensitivity to pain (CIP) is a rare autosomal recessive condition. Self-mutilation is an invariable feature of this disorder, involving the teeth and orofacial structures. This case report describes a case of a 6-year-old girl with CIP brought by her parents for prostheses to replace her self-extracted primary teeth.
- Published
- 2018
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