1. Methylation changes at the GNAS imprinted locus in pancreatic cystic neoplasms are important for the diagnosis of malignant cysts
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Sandra Faias, Marília Cravo, Luísa Pereira, Cristina Albuquerque, Paula Chaves, António Dias Pereira, and Marlene Duarte
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musculoskeletal diseases ,congenital, hereditary, and neonatal diseases and abnormalities ,Observational Study ,Locus (genetics) ,Methylation ,Intraductal papillary mucinous neoplasms ,03 medical and health sciences ,0302 clinical medicine ,GNAS complex locus ,Medicine ,Pancreatic neoplasm ,skin and connective tissue diseases ,biology ,Pancreas cyst ,business.industry ,GNAS locus ,Gastroenterology ,Biomarker ,stomatognathic diseases ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,030211 gastroenterology & hepatology ,sense organs ,business - Abstract
BACKGROUND Guanine nucleotide-binding protein, alpha stimulating (GNAS) mutations are characteristic of intraductal papillary mucinous neoplasms (IPMNs). Pancreatic ductal adenocarcinomas (PDACs) harboring GNAS mutations originate in IPMNs. GNAS is a complex imprinted locus that produces five transcripts regulated by differential methylated regions, NESP55, GNASAS, GNASXL, GNAS1A, and GNAS. AIM To evaluate if methylation changes in the differential methylated regions of GNAS locus contributed to malignant progression of pancreatic cysts. METHODS GNAS locus methylation was analyzed in archival pancreatic cyst fluid (PCF) obtained by endoscopic ultrasound with fine-needle aspiration by methylation specific–multiplex ligation dependent probe amplification. Results were normalized and analyzed using Coffalyser.Net software. RESULTS Fifty-two PCF samples obtained by endoscopic ultrasound with fine-needle aspiration and previously characterized for KRAS and GNAS mutations were studied. The final diagnoses were surgical (11) and clinicopathological (41), including 30 benign cysts, 14 pre-malignant cyst, and eight malignant cysts. Methylation changes at NESP55, GNASAS, GNAS1A, and especially GNASXL were more frequent in malignant cysts, and NESP55 and GNASAS were useful for diagnosis. A combined variable defined as “GNAS locus methylation changes” was significantly associated with malignancy (6/8 malignant cysts and only 2/20 benign cysts) and improved classification. Hypermethylation in both maternally (NESP55) and paternally (GNASXL) derived promoters was found in 3/3 PDACs. CONCLUSION This is the first study to identify methylation changes in the GNAS locus, improving the diagnosis of malignant pancreatic cysts and suggesting a role in progression to PDAC.
- Published
- 2020
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