1. Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation
- Author
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Silvia Gravina, Bo Yu, Xiao Dong, Önder Kartal, R. David Hawkins, Raifa Zody, Timothy Schimmel, Drew Tortoriello, Jan Vijg, and Jacques Cohen
- Subjects
Adult ,Resource ,0301 basic medicine ,Bisulfite sequencing ,epigenome ,Biology ,Biochemistry ,Epigenesis, Genetic ,03 medical and health sciences ,Oogenesis ,Genetics ,medicine ,human oocyte ,Humans ,in vitro maturation ,lcsh:QH301-705.5 ,Cells, Cultured ,lcsh:R5-920 ,Germinal vesicle ,Genome, Human ,Gene Expression Regulation, Developmental ,Cell Biology ,Methylation ,DNA Methylation ,Oocyte ,Molecular biology ,Cell biology ,In vitro maturation ,single cell ,030104 developmental biology ,medicine.anatomical_structure ,oocyte maturation ,CpG site ,lcsh:Biology (General) ,DNA methylation ,Oocytes ,CpG Islands ,Female ,DNA methylome ,Single-Cell Analysis ,lcsh:Medicine (General) ,Reprogramming ,non-CpG methylation ,Developmental Biology - Abstract
Summary The establishment of DNA methylation patterns in oocytes is a highly dynamic process marking gene-regulatory events during fertilization, embryonic development, and adulthood. However, after epigenetic reprogramming in primordial germ cells, how and when DNA methylation is re-established in developing human oocytes remains to be characterized. Here, using single-cell whole-genome bisulfite sequencing, we describe DNA methylation patterns in three different maturation stages of human oocytes. We found that while broad-scale patterns of CpG methylation have been largely established by the immature germinal vesicle stage, localized changes continue into later development. Non-CpG methylation, on the other hand, undergoes a large-scale, generalized remodeling through the final stage of maturation, with the net overall result being the accumulation of methylation as oocytes mature. The role of the genome-wide, non-CpG methylation remodeling in the final stage of oocyte maturation deserves further investigation., Highlights • Broad-scale CpG methylation is largely stable during oocyte maturation • Non-CpG methylation accumulates as oocytes mature • Non-CpG methylation changes are genome wide, CpG methylation is established globally in adult immature oocytes and remains stable during maturation. Non-CpG methylation undergoes a genome-wide, generalized remodeling through the final stage of maturation, with the net overall result being accumulation of methylation as oocytes mature.
- Published
- 2017