1. Assessment of genetic diversity and genetic relationships of farm and laboratory quail populations in Japan using microsatellite DNA markers
- Author
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Mitsuo Nunome, Yoichi Matsuda, Rie Yoshioka, Katsutoshi Kino, and Takuro Shinkai
- Subjects
Genetic Markers ,Male ,Population ,Zoology ,Coturnix ,Japanese quail ,Japan ,Genetic variation ,Inbreeding depression ,Animals ,molecular phylogenetic tree ,education ,Genetic diversity ,education.field_of_study ,General Veterinary ,biology ,STRUCTURE plot ,Coturnix japonica ,Genetic Variation ,Original Articles ,biology.organism_classification ,SSR ,Genetic marker ,breeding ,Genetic structure ,Microsatellite ,Original Article ,Female ,genetic assessment ,Microsatellite Repeats - Abstract
Background The Japanese quail (Coturnix japonica) is an important poultry species owing to their high economic efficiency and biological advantages. The genetic diversity of farm quail populations has rarely been studied. Objectives This study aimed to assess the genetic diversity of farm quail populations and their genetic relationships, which could provide important information for designing breeding programmes to maintain egg and/or meat production efficiency. Methods Molecular phylogenetic and STRUCTURE analyses were conducted for seven farm populations and six laboratory lines using 50 microsatellite markers previously developed by us. Results The genetic diversity within each farm population was relatively high despite long‐term breeding within closed colonies. However, the genetic variation between populations was absent. Twenty highly polymorphic markers, selected based on Ne, He and FST values, enabled the construction of reliable phylogenetic trees and STRUCTURE plots. Conclusions In the farm populations analysed in the present study, gene flow between genetically distant populations is needed to restore genetic diversity between farm populations, which could exploit heterosis and decrease the risk of inbreeding depression. Our findings demonstrate that these markers are useful for examining the genetic structure of farm quail populations., We conducted genetic monitoring for six farm populations in Aichi prefecture, Japan, and five laboratory lines, whose breeding histories are well recorded, using 48 microsatellite markers. We estimated the genetic diversity of the farm populations and their genetic relationships by molecular phylogenetic and STRUCTURE analyses, which provided important information to obtain suitable genetically distinct candidates for cross‐mating to restore genetic diversity among populations.
- Published
- 2020