1. The Genome Segments of Bluetongue Virus Differ in Copy Number in a Host-Specific Manner
- Author
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Moreau, Yannis, Gil, Patricia, Exbrayat, Antoni, Rakotoarivony, Ignace, Bréard, Emmanuel, Sailleau, Corinne, Viarouge, Cyril, Zientara, Stephan, Savini, Giovanni, Goffredo, Maria, Mancini, Giuseppe, Loire, Etienne, Gutierrez, Serafìn, Animal, Santé, Territoires, Risques et Ecosystèmes (UMR ASTRE), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Département Systèmes Biologiques (Cirad-BIOS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Virologie UMR1161 (VIRO), École nationale vétérinaire d'Alfort (ENVA)-Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise Guiseppe Caporale (IZSAM), Partenaires INRAE, This work was supported by research grants CuliOme (ANIHWA, ERA-Net) and PALE-Blu (H2020) from European Union. This work was also funded by the Direction générale de l’alimentation from the French Ministry of Agriculture and Food., European Project: 727393,PALE Blu, European Project: 291815,EC:FP7:KBBE,FP7-ERANET-2011-RTD,ANIHWA(2012), École nationale vétérinaire - Alfort (ENVA)-Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), European Project: 727393,H2020,H2020-EU.3.2.1.1.,PALE-Blu(2017), and Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'Giuseppe Caporale' (IZS Teramo)
- Subjects
DNA Copy Number Variations ,Population genetics ,viruses ,[SDV]Life Sciences [q-bio] ,Gene Dosage ,Genome, Viral ,Ceratopogonidae ,L73 - Maladies des animaux ,Virus-host interactions ,MESH: Bluetongue virus ,Bluetongue ,Host Specificity ,Virus des animaux ,Virus bluetongue ,Animals ,MESH: Bluetongue ,Spotlight ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,Sheep ,Gene copy number ,Santé animale ,fréquence génique ,Culicoides ,L10 - Génétique et amélioration des animaux ,MESH: Ceratopogonidae ,Insect Vectors ,génétique animale ,PCR ,Genetic Diversity and Evolution ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,MESH: Genome, Viral ,Bluetongue virus - Abstract
The variation in viral gene frequencies remains a largely unexplored aspect of within-host genetics. This phenomenon is often considered to be specific to multipartite viruses. Multipartite viruses have segmented genomes, but in contrast to segmented viruses, their segments are each encapsidated alone in a virion. A main hypothesis explaining the evolution of multipartism is that, compared to segmented viruses, it facilitates the regulation of segment abundancy, and the genes the segments carry, within a host. These differences in gene frequencies could allow for expression regulation. Here, we show that wild populations of a segmented virus, bluetongue virus (BTV), also present unequal segment frequencies. BTV cycles between ruminants and Culicoides biting midges. As expected from a role in expression regulation, segment frequencies tended to show specific values that differed between ruminants and midges. Our results expand previous knowledge on gene frequency variation and call for studies on its role and conservation beyond multipartite viruses., Genome segmentation is mainly thought to facilitate reassortment. Here, we show that segmentation can also allow differences in segment abundance in populations of bluetongue virus (BTV). BTV has a genome consisting in 10 segments, and its cycle primarily involves periodic alternation between ruminants and Culicoides biting midges. We have developed a reverse transcription-quantitative PCR (RT-qPCR) approach to quantify each segment in wild BTV populations sampled in both ruminants and midges during an epizootic. Segment frequencies deviated from equimolarity in all hosts. Interestingly, segment frequencies were reproducible and distinct between ruminants and biting midges. Beyond a putative regulatory role in virus expression, this phenomenon could lead to different evolution rates between segments. IMPORTANCE The variation in viral gene frequencies remains a largely unexplored aspect of within-host genetics. This phenomenon is often considered to be specific to multipartite viruses. Multipartite viruses have segmented genomes, but in contrast to segmented viruses, their segments are each encapsidated alone in a virion. A main hypothesis explaining the evolution of multipartism is that, compared to segmented viruses, it facilitates the regulation of segment abundancy, and the genes the segments carry, within a host. These differences in gene frequencies could allow for expression regulation. Here, we show that wild populations of a segmented virus, bluetongue virus (BTV), also present unequal segment frequencies. BTV cycles between ruminants and Culicoides biting midges. As expected from a role in expression regulation, segment frequencies tended to show specific values that differed between ruminants and midges. Our results expand previous knowledge on gene frequency variation and call for studies on its role and conservation beyond multipartite viruses.
- Published
- 2021
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