11 results on '"Cookson, WIlliam O.C."'
Search Results
2. Shared genetic and experimental links between obesity-related traits and asthma subtypes in UK Biobank.
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Zhu, Zhaozhong, Guo, Yanjun, Shi, Huwenbo, Liu, Cong-Lin, Panganiban, Ronald Allan, Chung, Wonil, O'Connor, Luke J., Himes, Blanca E., Gazal, Steven, Hasegawa, Kohei, Camargo, Carlos A., Qi, Lu, Moffatt, Miriam F., Hu, Frank B., Lu, Quan, Cookson, William O.C., and Liang, Liming
- Abstract
Clinical and epidemiologic studies have shown that obesity is associated with asthma and that these associations differ by asthma subtype. Little is known about the shared genetic components between obesity and asthma. We sought to identify shared genetic associations between obesity-related traits and asthma subtypes in adults. A cross-trait genome-wide association study (GWAS) was performed using 457,822 subjects of European ancestry from the UK Biobank. Experimental evidence to support the role of genes significantly associated with both obesity-related traits and asthma through a GWAS was sought by using results from obese versus lean mouse RNA sequencing and RT-PCR experiments. We found a substantial positive genetic correlation between body mass index and later-onset asthma defined by asthma age of onset at 16 years or greater (Rg = 0.25, P = 9.56 × 10
−22 ). Mendelian randomization analysis provided strong evidence in support of body mass index causally increasing asthma risk. Cross-trait meta-analysis identified 34 shared loci among 3 obesity-related traits and 2 asthma subtypes. GWAS functional analyses identified potential causal relationships between the shared loci and Genotype-Tissue Expression (GTEx) quantitative trait loci and shared immune- and cell differentiation–related pathways between obesity and asthma. Finally, RNA sequencing data from lungs of obese versus control mice found that 2 genes (acyl-coenzyme A oxidase-like [ACOXL] and myosin light chain 6 [MYL6]) from the cross-trait meta-analysis were differentially expressed, and these findings were validated by using RT-PCR in an independent set of mice. Our work identified shared genetic components between obesity-related traits and specific asthma subtypes, reinforcing the hypothesis that obesity causally increases the risk of asthma and identifying molecular pathways that might underlie both obesity and asthma. [ABSTRACT FROM AUTHOR]- Published
- 2020
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3. Utility of Nuclear Grading System in Epithelioid Malignant Pleural Mesothelioma in Biopsy-heavy Setting
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Zhang, Yu Zhi, Brambilla, Cecilia, Molyneaux, Philip L., Rice, Alexandra, Robertus, Jan L., Jordan, Simon, Lim, Eric, Lang-Lazdunski, Loic, Begum, Sofina, Dusmet, Michael, Anikin, Vladimir, Beddow, Emma, Finch, Jonathan, Asadi, Nizar, Popat, Sanjay, Cookson, William O.C., Moffatt, Miriam F., and Nicholson, Andrew G.
- Abstract
Supplemental Digital Content is available in the text.Nuclear grading systems for epithelioid malignant pleural mesothelioma (MPM) have been proposed but it remains uncertain if they could be applied in a biopsy-heavy setting. Using the proposed system, we conducted an independent, external validation study using 563 consecutive cases of epithelioid MPM diagnosed at our institution between 2003 and 2017, of which 87% of patients underwent biopsies only. The median number of sites sampled was 1, with a median maximum tissue dimension of 17 mm (biopsy) and 150 mm (resection). The median overall survival (OS) was 14.7 months. The frequencies of grade I, II, and III tumors were 31% (132/563), 52% (292/563), and 17% (94/563). Grade I tumors were associated with the most favorable median OS (24.7 mo) followed by grades II (12.7 mo) and III (7.2 mo). The 2-tier nuclear grade separated tumors into low grade (19.3 mo) and high grade (8.9 mo). In multivariate analysis, 3-tier nuclear grade, 2-tier nuclear grade, and mitosis-necrosis score predicted OS independent of age, procedural type, solid-predominant growth pattern, necrosis, and atypical mitosis (all P<0.001 except 2-tier nuclear grade, P=0.001). In the scenario of a single- site biopsy with tissue dimension ≤10 mm, none but age (P=0.002) were independently predictive. Our data also suggested sampling 3 sites or a maximum tissue dimension of at least 20 mm from a single site is optimal for nuclear grade assessment. In conclusion our study confirmed the utility of nuclear grade in epithelioid MPM using a biopsy-heavy cohort provided the tissue sample met minimum dimensional criteria.
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- 2020
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4. Identification of a new locus at 16q12 associated with time to asthma onset.
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Sarnowski, Chloé, Sugier, Pierre-Emmanuel, Granell, Raquel, Jarvis, Debbie, Dizier, Marie-Hélène, Ege, Markus, Imboden, Medea, Laprise, Catherine, Khusnutdinova, Elza K., Freidin, Maxim B., Cookson, William O.C., Moffatt, Miriam, Lathrop, Mark, Siroux, Valérie, Ogorodova, Ludmila M., Karunas, Alexandra S., James, Alan, Probst-Hensch, Nicole M., von Mutius, Erika, and Pin, Isabelle
- Abstract
Background Asthma is a heterogeneous disease in which age of onset plays an important role. Objective We sought to identify the genetic variants associated with time to asthma onset (TAO). Methods We conducted a large-scale meta-analysis of 9 genome-wide association studies of TAO (total of 5462 asthmatic patients with a broad range of age of asthma onset and 8424 control subjects of European ancestry) performed by using survival analysis techniques. Results We detected 5 regions associated with TAO at the genome-wide significant level ( P < 5 × 10 −8 ). We evidenced a new locus in the 16q12 region (near cylindromatosis turban tumor syndrome gene [CYLD] ) and confirmed 4 asthma risk regions: 2q12 (IL-1 receptor–like 1 [IL1RL1] ), 6p21 (HLA-DQA1) , 9p24 (IL33) , and 17q12-q21 (zona pellucida binding protein 2 [ZPBP2] –gasdermin A [GSDMA] ). Conditional analyses identified 2 distinct signals at 9p24 (both upstream of IL33 ) and 17q12-q21 (near ZPBP2 and within GSDMA ). Together, these 7 distinct loci explained 6.0% of the variance in TAO. In addition, we showed that genetic variants at 9p24 and 17q12-q21 were strongly associated with an earlier onset of childhood asthma ( P ≤ .002), whereas the 16q12 single nucleotide polymorphism was associated with later asthma onset ( P = .04). A high burden of disease risk alleles at these loci was associated with earlier age of asthma onset (4 vs 9-12 years, P = 10 −4 ). Conclusion The new susceptibility region for TAO at 16q12 harbors variants that correlate with the expression of CYLD and nucleotide-binding oligomerization domain 2 (NOD2) , 2 strong candidates for asthma. This study demonstrates that incorporating the variability of age of asthma onset in asthma modeling is a helpful approach in the search for disease susceptibility genes. [ABSTRACT FROM AUTHOR]
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- 2016
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5. The role of atopic sensitization in flexural eczema: Findings from the International Study of Asthma and Allergies in Childhood Phase Two.
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Flohr, Carsten, Weiland, Stephan K., Weinmayr, Gudrun, Björkstén, Bengt, Bråbäck, Lennart, Brunekreef, Bert, Büchele, Gisela, Clausen, Michael, Cookson, William O.C., von Mutius, Erika, Strachan, David P., and Williams, Hywel C.
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ECZEMA ,ASTHMA in children ,ALLERGY in children ,JUVENILE diseases - Abstract
Background: The association between allergic sensitization and eczema has been debated for years. Objective: We sought to determine and compare the strength of the association between allergen skin sensitization and eczema in both developing and industrialized countries. Methods: Twenty-eight thousand five hundred ninety-one randomly selected 8- to 12-year-old schoolchildren in 20 countries were physically examined for flexural eczema and received skin prick testing to Dermatophagoides pteronyssinus, Dermatophagoides farinae, cat hair, Alternaria tenuis, mixed tree and grass pollen, and allergens of local relevance. Results: The age- and sex-adjusted odds ratios (ORs) for a positive association between flexural eczema and atopy ranged between 0.74 (95% CI, 0.31-1.81) and 4.53 (95% CI, 1.72-11.93), with a significantly stronger association in affluent compared with nonaffluent countries (combined age- and sex-adjusted OR
affluent = 2.69 [95% CI, 2.31-3.13] and ORnonaffluent = 1.17 [95% CI, 0.81-1.70]). The combined population attributable fraction for atopy in flexural eczema was 27.9% for affluent and 1.2% for nonaffluent-country centers. Correlating gross national per-capita income with either ORs or population attributable fractions for atopy in flexural eczema confirmed a highly significant positive association (P = .006 and P < .001, respectively). Conclusions: The association between atopy and flexural eczema is weak and more variable than previously suggested, and the strength of this association is positively linked to gross national income. [Copyright &y& Elsevier]- Published
- 2008
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6. Genetic and genomic approaches to asthma
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Zhang, Youming, Moffatt, Miriam F., and Cookson, William O.C.
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The aim is to update current understanding of the genes identified by the recent genome-wide association studies (GWASs) of asthma and its associated traits. The review also discusses how to dissect the functional roles of novel genes in future research.
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- 2012
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7. Benign asbestos pleural diseases
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Chapman, Stephen J., Cookson, William O.C., Musk, A. William, and Lee, Y.C. Gary
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The global incidence of asbestos-related lung diseases is expected to continue to rise. Although much attention is devoted to malignant diseases induced by asbestos, benign asbestos pleural diseases (pleural plaques, benign asbestos-related pleural effusion, diffuse pleural thickening, and rounded atelectasis) are common in clinical practice and often produce diagnostic difficulties. The authors describe the clinical features of benign asbestos-related pleural disease, before focusing on recent advances in radiology and on controversies surrounding the pathogenesis of asbestos-induced pleural injury. Advances in computed tomography have assisted the understanding and diagnosis of these diseases, and increasing evidence suggests radiologic appearances on computed tomography can predict impairment in pulmonary function tests. The pathogenesis of asbestos-induced pleural diseases has also been subject to extensive investigation. Asbestos fibers can provoke pleural inflammation from direct toxicity to mesothelial cells. Inhaled asbestos fibers can also elicit pleural injury indirectly via the release of growth factors and inflammatory cytokines from within the lung. Although progress has been made in the understanding of the mechanisms of asbestos pleural injury, many important questions remain unanswered. The role of genetic factors and possible environmental cofactors (eg,simian virus 40) in the pathogenesis of benign asbestos pleural diseases requires further research.
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- 2003
8. Radiographic abnormalities and duration of employment in Western Australian iron‐ore miners
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Musk, A. William, Cookson, William O.C., Klerk, Nicholas H. de, and Morgan, William K.C.
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ABSTRACT Plain chest radiographs of 788 Pilbara iron‐ore miners from Western Australia have been examined by two independent observers for evidence of pneumoconiosis. The prevalence of any radiographic abnormality (a profusion grade of 0/1 or greater on the International Labour Office [ILO] scale) was 6.7% for Reader 1 and 9.9% for Reader 2. The prevalence of a definite radiographic abnormality (a profusion grade of 1/0 or greater on the ILO scale) was 1.9% for Reader 1 and 2.8% for Reader 2. The prevalence of any abnormality, as identified by either or by both observers, was significantly related to age. The relationship between a radiographic abnormality and the duration of employment was less clear. The results indicate a need for more detailed and comprehensive studies of the effects of ironore dust in this industry.
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- 1988
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9. Pulmonary ORMDL3 is critical for induction of Alternaria-induced allergic airways disease.
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Löser, Stephan, Gregory, Lisa G., Zhang, Youming, Schaefer, Katrein, Walker, Simone A., Buckley, James, Denney, Laura, Dean, Charlotte H., Cookson, William O.C., Moffatt, Miriam F., and Lloyd, Clare M.
- Abstract
Background Genome-wide association studies have identified the ORM (yeast)-like protein isoform 3 ( ORMDL3 ) gene locus on human chromosome 17q to be a highly significant risk factor for childhood-onset asthma. Objective We sought to investigate in vivo the functional role of ORMDL3 in disease inception. Methods An Ormdl3 -deficient mouse was generated and the role of ORMDL3 in the generation of allergic airways disease to the fungal aeroallergen Alternaria alternata was determined. An adeno-associated viral vector was also used to reconstitute ORMDL3 expression in airway epithelial cells of Ormdl3 knockout mice. Results Ormdl3 knockout mice were found to be protected from developing allergic airways disease and showed a marked decrease in pathophysiology, including lung function and airway eosinophilia induced by Alternaria. Alternaria is a potent inducer of cellular stress and the unfolded protein response, and ORMDL3 was found to play a critical role in driving the activating transcription factor 6–mediated arm of this response through Xbp1 and downstream activation of the endoplasmic reticulum–associated degradation pathway. In addition, ORMDL3 mediated uric acid release, another marker of cellular stress. In the knockout mice, reconstitution of Ormdl3 transcript levels specifically in the bronchial epithelium resulted in reinstatement of susceptibility to fungal allergen–induced allergic airways disease. Conclusions This study demonstrates that ORMDL3 , an asthma susceptibility gene identified by genome-wide association studies, contributes to key pathways that promote changes in airway physiology during allergic immune responses. [ABSTRACT FROM AUTHOR]
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- 2017
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10. Whole Genome Sequencing Identifies Four Novel Variants in the Epidermal Differentiation Complex That Increase Risk and Severity for Atopic Dermatitis.
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Mathias, Rasika A., Chavan, Sameer, Boorgula, Meher, Cookson, William O.C., Willis-Owen, Saffron, Rafaels, Nicholas M., Hanifin, Jon M., Paller, Amy, Schneider, Lynda C., Gallo, Richard, Guttman-Yassky, Emma, Ong, Peck Y., Ruczinski, Ingo, Beaty, Terri, Gao, Li, Beck, Lisa A., Moffat, Miriam, Leung, Donald Y.M., and Barnes, Kathleen C.
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- 2017
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11. PDE11A associations with asthma: Results of a genome-wide association scan.
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DeWan, Andrew T., Triche, Elizabeth W., Xu, Xuming, Hsu, Ling-I, Zhao, Connie, Belanger, Kathleen, Hellenbrand, Karen, Willis-Owen, Saffron A.G., Moffatt, Miriam, Cookson, William O.C., Himes, Blanca E., Weiss, Scott T., Gauderman, W. James, Baurley, James W., Gilliland, Frank, Wilk, Jemma B., O’Connor, George T., Strachan, David P., Hoh, Josephine, and Bracken, Michael B.
- Published
- 2010
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