174 results on '"Kwiatkowski, David"'
Search Results
2. Analysis of inactivating TSC1 and TSC2 alterations in advanced genitourinary (GU) cancers from a real-world patient population in the Foundation Medicine genomic database.
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Iyer, Gopa, Alonzo Palma, Norma, Navarro, Willis H., and Kwiatkowski, David J.
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- 2024
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3. Contemporary Care and Outcomes of Critically-ill Children With Clinically Diagnosed Myocarditis.
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PENG, DAVID M., KWIATKOWSKI, DAVID M., LASA, JAVIER J., ZHANG, WENDY, BANERJEE, MOUSUMI, MIKESELL, KATHERINE, JOONG, ANNA, DYKES, JOHN C., TUME, SEBASTIAN C., NIEBLER, ROBERT A., TEELE, SARAH A., KLUGMAN, DARREN, GAIES, MICHAEL G., and SCHUMACHER, KURT R.
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• In 847 children admitted to the cardiac intensive care unit with the diagnosis of myocarditis, survival to discharge was 93.7%; 19.1% of patients received ECMO, 4.1% received VAD, and 2.5% of patients underwent heart transplantation before discharge. • Body surface area ≤ 0.3m
2 , eGFR < 30mL/min/1.73m2 at presentation, mechanical ventilation, and ECMO were independently associated with in-hospital mortality. • Survival rates after ECMO and cardiac arrest in this population are better now than they were in the past. • Creating a uniform and implementable way to diagnose myocarditis in children should be a priority so as to allow further improved outcomes. To describe contemporary management and outcomes in children with myocarditis who are admitted to a cardiac intensive care unit (CICU) and to identify the characteristics associated with mortality. All patients in the Pediatric Cardiac Critical Care Consortium (PC4 ) registry between August 2014 and June 2021 who were diagnosed with myocarditis were included. Univariable analyses and multivariable logistic regression evaluated the factors associated with in-hospital mortality. There were 847 CICU admissions for myocarditis in 51 centers. The median age was 12 years (IQR 2.7–16). In-hospital mortality occurred in 53 patients (6.3%), and 60 (7.1%) had cardiac arrest during admission. Mechanical ventilation was required in 339 patients (40%), and mechanical circulatory support (MCS) in 177 (21%); extracorporeal membrane oxygenation (ECMO)-only in 142 (16.7%), ECMO-to-ventricular assist device (VAD) in 20 (2.4%), extracorporeal cardiac resuscitation in 43 (5%), and VAD-only in 15 (1.8%) patients. MCS was associated with in-hospital mortality; 20.3% receiving MCS died compared to 2.5% without MCS (P < 0.001). Mortality rates were similar in ECMO-only, ECMO-to-VAD and VAD-only groups. The median time from CICU admission to ECMO was 2.0 hours (IQR 0–9.4) and to VAD, it was 9.9 days (IQR 6.3–16.8). Time to MCS was not associated with mortality. In multivariable modeling of patients' characteristics, smaller body surface area (BSA) and low eGFR were independently associated with mortality, and after including critical therapies, mechanical ventilation and ECMO were independent predictors of mortality. This contemporary cohort of children admitted to CICUs with myocarditis commonly received high-resource therapies; however, most patients survived to hospital discharge and rarely received VAD. Smaller patient size, acute kidney injury and receipt of mechanical ventilation or ECMO were independently associated with mortality. [Display omitted] [ABSTRACT FROM AUTHOR]- Published
- 2024
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4. PRECISION 1: A phase 2, multicenter, open-label basket trial of nab -sirolimus for malignant solid tumors harboring pathogenic inactivating alterations in TSC1 and TSC2.
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Deming, Dustin A., Kwiatkowski, David J., Ding, Li, Schmid, Anita N., Navarro, Willis H., Rodon Ahnert, Jordi, and Iyer, Gopa
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- 2024
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5. Real-world analysis of patients with advanced gastrointestinal (GI) cancers harboring inactivating TSC1 and TSC2 alterations using the Foundation Medicine genomic database.
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Deming, Dustin A., Alonzo Palma, Norma, Navarro, Willis H., Iyer, Gopa, and Kwiatkowski, David J.
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- 2024
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6. Benchmarking mismatch repair testing for patients with cancer receiving immunotherapy.
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Bou Farhat, Elias, Adib, Elio, Daou, Melissa, Naqash, Abdul Rafeh, Matulonis, Ursula A., Ng, Kimmie, Kwiatkowski, David J., Sholl, Lynette M., and Nassar, Amin
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- 2024
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7. Staged vs Complete Repair in Tetralogy of Fallot With Pulmonary Atresia.
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Boucek, Katerina, Mastropietro, Christopher W., Beall, Jonathan, Keller, Everette, Beshish, Asaad, Flores, Saul, Chlebowski, Meghan, Yates, Andrew R., Choudhury, Tarif A., Mueller, Dana, Kwiatkowski, David M., Migally, Karl, Karki, Karan, Willett, Renee, Radman, Monique R., Reddy, Chetana, Piggott, Kurt, Capone, Christine A., Kapileshwarkar, Yamini, and Vijayakumar, Niranjan
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We sought to compare outcomes for infants with tetralogy of Fallot with pulmonary atresia (TOF/PA) and confluent pulmonary arteries who underwent staged or primary complete surgical repair. This retrospective study included infants undergoing initial surgical intervention between 0 and 60 days of age with TOF/PA without aortopulmonary collaterals from 2009 to 2018 at 20 centers. The primary outcome was days alive and out of the hospital in the first year of life (DAOH365). Secondary outcomes were mortality at 1 year of age and a composite major complication outcome. Multivariable modeling with generalized estimating equations were used to compare outcomes between groups. Of 221 subjects, 142 underwent staged repair and 79 underwent primary complete repair. There was no significant difference in median DAOH365 between the staged and primary repair groups (317 days [interquartile range, 278-336] vs 338 days [interquartile range, 314-348], respectively; adjusted P =.13). Nine staged repair patients (7%) died in the first year of life vs 5 primary repair patients (6%; adjusted odds ratio, 1.00; 95% CI, 0.25-3.95). At least 1 major complication occurred in 37% of patients who underwent staged repair vs 41% of patients who underwent primary complete repair (P =.75), largely driven by the need for unplanned cardiac reinterventions. For infants with TOF/PA with confluent pulmonary arteries, a surgical strategy of staged or primary complete repair resulted in statistically similar DAOH365, early mortality, and morbidity. [ABSTRACT FROM AUTHOR]
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- 2023
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8. Procedural Outcomes of Pulmonary Atresia With Intact Ventricular Septum in Neonates: A Multicenter Study.
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Cheung, Eva W., Mastropietro, Christopher W., Flores, Saul, Amula, Venugopal, Radman, Monique, Kwiatkowski, David, Puente, Bao Nguyen, Buckley, Jason R., Allen, Kiona, Loomba, Rohit, Karki, Karan, Chiwane, Saurabh, Cashen, Katherine, Piggott, Kurt, Kapileshwarkar, Yamini, Gowda, Keshava Murthy Narayana, Badheka, Aditya, Raman, Rahul, Costello, John M., and Zang, Huaiyu
- Abstract
Multicenter contemporary data describing short-term outcomes after initial interventions of neonates with pulmonary atresia with intact ventricular septum (PA-IVS) are limited. This multicenter study describes characteristics and outcomes of PA-IVS neonates after their initial catheter or surgical intervention and identifies factors associated with major adverse cardiac events (MACE). Neonates with PA-IVS who underwent surgical or catheter intervention between 2009 and 2019 in 19 centers were reviewed. Risk factors for MACE, defined as cardiopulmonary resuscitation, mechanical circulatory support, stroke, or in-hospital mortality, were analyzed using multivariable logistic regression models. We reviewed 279 neonates: 79 (28%) underwent right ventricular decompression, 151 (54%) underwent systemic-to-pulmonary shunt or ductal stent placement only, 36 (13%) underwent right ventricular decompression with shunt or ductal stent placement, and 11 (4%) underwent transplantation. MACE occurred in 57 patients (20%): 26 (9%) received mechanical circulatory support, 37 (13%) received cardiopulmonary resuscitation, stroke occurred in 16 (6%), and 23 (8%) died. The presence of 2 major coronary artery stenoses (adjusted odds ratio, 4.99; 95% CI, 1.16-21.39) and lower weight at first intervention (adjusted odds ratio, 1.52; 95% CI, 1.01-2.27) were significantly associated with MACE. Coronary ischemia was the most frequent presumed mechanism of death (n = 10). In a multicenter cohort, 1 in 5 neonates with PA-IVS experienced MACE after their initial intervention. Patients with 2 major coronary artery stenoses or lower weight at the time of the initial procedure were most likely to experience MACE and warrant vigilance during preintervention planning and postintervention management. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2023
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9. The development and efficacy of a paediatric cardiology fellowship online preparatory course
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Motonaga, Kara S., Sacks, Loren, Olson, Inger, Balasubramanian, Sowmya, Chen, Sharon, Peng, Lynn, Feinstein, Jeffrey A., Silverman, Norman H., Hanley, Frank L., Axelrod, David M., Krawczeski, Catherine D., Arunamata, Alisa, Kwiatkowski, David M., and Ceresnak, Scott R.
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AbstractBackground:The transition from residency to paediatric cardiology fellowship is challenging due to the new knowledge and technical skills required. Online learning can be an effective didactic modality that can be widely accessed by trainees. We sought to evaluate the effectiveness of a paediatric cardiology Fellowship Online Preparatory Course prior to the start of fellowship.Methods:The Online Preparatory Course contained 18 online learning modules covering basic concepts in anatomy, auscultation, echocardiography, catheterisation, cardiovascular intensive care, electrophysiology, pulmonary hypertension, heart failure, and cardiac surgery. Each online learning module included an instructional video with pre-and post-video tests. Participants completed pre- and post-Online Preparatory Course knowledge-based exams and surveys. Pre- and post-Online Preparatory Course survey and knowledge-based examination results were compared via Wilcoxon sign and paired t-tests.Results:151 incoming paediatric cardiology fellows from programmes across the USA participated in the 3 months prior to starting fellowship training between 2017 and 2019. There was significant improvement between pre- and post-video test scores for all 18 online learning modules. There was also significant improvement between pre- and post-Online Preparatory Course exam scores (PRE 43.6 ± 11% versus POST 60.3 ± 10%, p < 0.001). Comparing pre- and post-Online Preparatory Course surveys, there was a statistically significant improvement in the participants’ comfort level in 35 of 36 (97%) assessment areas. Nearly all participants (98%) agreed or strongly agreed that the Online Preparatory Course was a valuable learning experience and helped alleviate some anxieties (77% agreed or strongly agreed) related to starting fellowship.Conclusion:An Online Preparatory Course prior to starting fellowship can provide a foundation of knowledge, decrease anxiety, and serve as an effective educational springboard for paediatric cardiology fellows.
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- 2023
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10. Clinical Predictive Tool for Pediatric Cardiac Patients on Extracorporeal Membrane Oxygenation Therapy and Ultrafiltration
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Sedler, Jennifer, Sutherland, Scott M., Uber, Amanda M., Jahadi, Ozzie, Ryan, Kathleen R., Yarlagadda, Vamsi V., and Kwiatkowski, David M.
- Abstract
Fluid overload is common among pediatric cardiac patients receiving extracorporeal membrane oxygenation (ECMO) and is often treated with in-line ultrafiltration (UF) or continuous renal replacement therapy (CRRT). We assessed whether CRRT was associated with poor outcomes versus UF alone. Additionally, we identified characteristics associated with progression from UF to CRRT. Retrospective chart review of 131 patients age ≤18 years treated with ECMO at a single quaternary center. Data were collected to compare patient demographics, characteristics, and outcomes. A receiver operator curve (ROC) was used to create a tool predictive of the need for CRRT at the time of UF initiation. Patients who required CRRT had a higher creatinine and blood urea nitrogen at time of UF initiation (p= 0.03 and p< 0.01), longer total ECMO duration (p< 0.01), lower renal recovery incidence (p= 0.02), and higher mortality (p≤ 0.01). Using ROC analysis, presence of ≤3 of 7 risk variables had a positive predictive value of 87.5% and negative predictive value of 50.0% for use of UF alone (area under the curve 0.801; 95% CI: 0.638–0.965, p= 0.002). Pediatric cardiac patients treated with ECMO and UF who require CRRT demonstrate worse outcomes versus UF alone. A novel clinical tool may assist in stratifying patients at UF initiation.
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- 2023
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11. Impact of Weight on Ventricular Assist Device Outcomes in Dilated Cardiomyopathy Patients in Pediatric Centers: An ACTION Registry Study
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Kwiatkowski, David M., Shezad, Muhammad, Barnes, Aliessa P., Ploutz, Michelle S., Law, Sabrina P., Zafar, Farhan, Morales, David L.S., O’Connor, Matthew J., Ahmed, Humera, Aljohani, Othman A., Auerbach, Scott R., Bansal, Neha, Bearl, David W, Brickler, Molly, Buchholz, Holger, Byrnes, Jonathan W., Carrington, Sydney, Chandnani, Harsha K., Conway, Jennifer L., Do, Nhue L., Dykes, John C., Honjo, Osami, Jeewa, Aamir, Joong, Anna, Kindel, Steven J., Kleinmahon, Jake A, Lantz, Jodie, Lorts, Angela, Maeda, Katsuhide, Mao, Chad Y., Mauchley, David C., May, Lindsay, McCormick, Amanda D., Nandi, Deipanjan, Peng, David M., Rosenthal, David N., Shugh, Svetlana, Simpson, Kathleen E., Watanbe, Kae, Wilkens, Sarah J., Wright, Lydia K., and Zinn, Matthew D.
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Ventricular assist device (VAD) options vary for children in different weight groups. This study evaluates contemporary device usage and outcomes for children based on weight. Data from the Advanced Cardiac Therapies Improving Outcomes Network (ACTION) registry were examined for patients with dilated cardiomyopathy (DCM) in 4 weight cohorts: <8 kg, 8–20 kg, 21–40 kg, and >40 kg, for devices implanted 3/2013–10/2020. Adverse event rates and ultimate outcome (deceased, alive on device, transplanted, or ventricular recovery) were analyzed. 222 DCM patients were identified with 24% in cohort 1, 23% in cohort 2, 15% in cohort 3, and 38% in cohort 4. Of 272 total implants, paracorporeal pulsatile devices were most common (95%) in cohorts 1 and 2 and intracorporeal continuous devices (81%) in cohorts 3 and 4. Stroke was noted in 17%, 12%, 6%, and 4% of cohorts, respectively (Cohort 1 vs. 4 and 2 vs. 4 – p= 0.01; other comparisons – not significant). Incidences of major bleeding, device malfunction, and infection was not different. All cohorts had >90% positive outcomes. Stroke incidence was higher in smaller cohorts, but other outcomes were similar. Positive outcomes were attained in over 90% across all weight groups, demonstrating excellent outcomes using current VADs in this DCM population.
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- 2023
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12. Fluid Accumulation After Neonatal Congenital Cardiac Operation: Clinical Implications and Outcomes.
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Bailly, David K., Alten, Jeffrey A., Gist, Katja M., Mah, Kenneth E., Kwiatkowski, David M., Valentine, Kevin M., Diddle, J.Wesley, Tadphale, Sachin, Clarke, Shanelle, Selewski, David T., Banerjee, Mousumi, Reichle, Garrett, Lin, Paul, Gaies, Michael, and Blinder, Joshua J.
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This study was conducted to determine the association between fluid balance metrics and mortality and other postoperative outcomes after neonatal cardiac operation in a contemporary multicenter cohort. This was an observational cohort study across 22 hospitals in neonates (≤30 days) undergoing cardiac operation. We explored overall percentage fluid overload, postoperative day 1 percentage fluid overload, peak percentage fluid overload, and time to first negative daily fluid balance. The primary outcome was in-hospital mortality. Secondary outcomes included postoperative duration of mechanical ventilation and intensive care unit (ICU) and hospital length of stay. Multivariable logistic or negative binomial regression was used to determine independent associations between fluid overload variables and each outcome. The cohort included 2223 patients. In-hospital mortality was 3.9% (n = 87). Overall median peak percentage fluid overload was 4.9% (interquartile range, 0.4%-10.5%). Peak percentage fluid overload and postoperative day 1 percentage fluid overload were not associated with primary or secondary outcomes. Hospital resource utilization increased on each successive day of not achieving a first negative daily fluid balance and was characterized by longer duration of mechanical ventilation (incidence rate ratio, 1.11; 95% CI, 1.08-1.14), ICU length of stay (incidence rate ratio, 1.08; 95% CI, 1.03-1.12), and hospital length of stay (incidence rate ratio, 1.09; 95% CI, 1.05-1.13). Time to first negative daily fluid balance, but not percentage fluid overload, is associated with improved postoperative outcomes in neonates after cardiac operation. Specific treatments to achieve an early negative fluid balance may decrease postoperative care durations. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2022
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13. Association of Machine Learning–Based Assessment of Tumor-Infiltrating Lymphocytes on Standard Histologic Images With Outcomes of Immunotherapy in Patients With NSCLC
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Rakaee, Mehrdad, Adib, Elio, Ricciuti, Biagio, Sholl, Lynette M., Shi, Weiwei, Alessi, Joao V., Cortellini, Alessio, Fulgenzi, Claudia A. M., Viola, Patrizia, Pinato, David J., Hashemi, Sayed, Bahce, Idris, Houda, Ilias, Ulas, Ezgi B., Radonic, Teodora, Väyrynen, Juha P., Richardsen, Elin, Jamaly, Simin, Andersen, Sigve, Donnem, Tom, Awad, Mark M., and Kwiatkowski, David J.
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IMPORTANCE: Currently, predictive biomarkers for response to immune checkpoint inhibitor (ICI) therapy in lung cancer are limited. Identifying such biomarkers would be useful to refine patient selection and guide precision therapy. OBJECTIVE: To develop a machine-learning (ML)-based tumor-infiltrating lymphocytes (TILs) scoring approach, and to evaluate TIL association with clinical outcomes in patients with advanced non–small cell lung cancer (NSCLC). DESIGN, SETTING, AND PARTICIPANTS: This multicenter retrospective discovery-validation cohort study included 685 ICI-treated patients with NSCLC with median follow-up of 38.1 and 43.3 months for the discovery (n = 446) and validation (n = 239) cohorts, respectively. Patients were treated between February 2014 and September 2021. We developed an ML automated method to count tumor, stroma, and TIL cells in whole-slide hematoxylin-eosin–stained images of NSCLC tumors. Tumor mutational burden (TMB) and programmed death ligand-1 (PD-L1) expression were assessed separately, and clinical response to ICI therapy was determined by medical record review. Data analysis was performed from June 2021 to April 2022. EXPOSURES: All patients received anti–PD-(L)1 monotherapy. MAIN OUTCOMES AND MEASURES: Objective response rate (ORR), progression-free survival (PFS), and overall survival (OS) were determined by blinded medical record review. The area under curve (AUC) of TIL levels, TMB, and PD-L1 in predicting ICI response were calculated using ORR. RESULTS: Overall, there were 248 (56%) women in the discovery cohort and 97 (41%) in the validation cohort. In a multivariable analysis, high TIL level (≥250 cells/mm2) was independently associated with ICI response in both the discovery (PFS: HR, 0.71; P = .006; OS: HR, 0.74; P = .03) and validation (PFS: HR = 0.80; P = .01; OS: HR = 0.75; P = .001) cohorts. Survival benefit was seen in both first- and subsequent-line ICI treatments in patients with NSCLC. In the discovery cohort, the combined models of TILs/PD-L1 or TMB/PD-L1 had additional specificity in differentiating ICI responders compared with PD-L1 alone. In the PD-L1 negative (<1%) subgroup, TIL levels had superior classification accuracy for ICI response (AUC = 0.77) compared with TMB (AUC = 0.65). CONCLUSIONS AND RELEVANCE: In these cohorts, TIL levels were robustly and independently associated with response to ICI treatment. Patient TIL assessment is relatively easily incorporated into the workflow of pathology laboratories at minimal additional cost, and may enhance precision therapy.
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- 2023
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14. Incidence of Germline Variants in Familial Bladder Cancer and Among Patients With Cancer Predisposition Syndromes
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Mossanen, Matthew, Nassar, Amin H., Stokes, Samantha M., Martinez-Chanza, Nieves, Kumar, Vivek, Nuzzo, Pier Vitale, Kwiatkowski, David J., Garber, Judy E., Curran, Catherine, Freeman, Dory, Preston, Mark, Mouw, Kent W., Kibel, Adam, Choueiri, Toni K., Sonpavde, Guru, and Rana, Huma Q.
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The familial aggregation of bladder cancers has been observed, but the incidence and association of familial bladder cancer with germline pathogenic and likely pathogenic (P/LP) variants is unknown.
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- 2022
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15. PRECISION 1: A phase 2, multicenter, open-label basket trial of nab -sirolimus for malignant solid tumors harboring pathogenic inactivating alterations in TSC1 and TSC2.
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Iyer, Gopa, Kwiatkowski, David J., Ding, Li, Schmid, Anita N., Navarro, Willis H., and Rodon Ahnert, Jordi
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- 2024
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16. Continuous Kidney Replacement Therapy and Survival in Children and Young Adults: Findings From the Multinational WE-ROCK Collaborative
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Starr, Michelle C., Gist, Katja M., Zang, Huaiyu, Ollberding, Nicholas J., Balani, Shanthi, Cappoli, Andrea, Ciccia, Eileen, Joseph, Catherine, Kakajiwala, Aadil, Kessel, Aaron, Muff-Luett, Melissa, Santiago Lozano, María J., Pinto, Matthew, Reynaud, Stephanie, Solomon, Sonia, Slagle, Cara, Srivastava, Rachana, Shih, Weiwen V., Webb, Tennille, Menon, Shina, Ahern, Emily, Arikan, Ayse Akcan, Alhamoud, Issa, Alobaidi, Rashid, Anton-Martin, Pilar, Barhight, Matthew, Basalely, Abby, Bigelow, Amee M., Bottari, Gabriella, Collins, Michaela, Colosimo, Denise, Cortina, Gerard, Damian, Mihaela A., Navazo, Sara de la Mata, DeAbreu, Gabrielle, Deep, Akash, Ding, Kathy L., Dolan, Kristin J., Fernandez Lafever, Sarah N., Fuhrman, Dana Y., Gelbart, Ben, Gorga, Stephen M., Guzzi, Francesco, Guzzo, Isabella, Haga, Taiki, Harvey, Elizabeth, Hasson, Denise C., Hill-Horowitz, Taylor, Inthavong, Haleigh, Kaddourah, Ahmad, Korn, Sarah, Krallman, Kelli A., Kwiatkowski, David M., Lee, Jasmine, Lequier, Laurance, Kia, Tina Madani, Mah, Kenneth E., Marinari, Eleonora, Martin, Susan D., Mohamed, Tahagod H., Morgan, Catherine, Mottes, Theresa A., Namachivayam, Siva, Neumayr, Tara M., Nhan, Jennifer, O’Rourke, Abigail, Qutob, Dua, Raggi, Valeria, Ricci, Zaccaria, Rumlow, Zachary A., See, Emily, Selewski, David T., Serpe, Carmela, Serratore, Alyssa, Shah, Ananya, Shin, H. Stella, Soranno, Danielle E., Stanski, Natalja L., Stenson, Erin K., Strong, Amy E., Taylor, Susan A., Thadani, Sameer V., Uber, Amanda M., Van Wyk, Brynna, Zangla, Emily E., and Zappitelli, Michael
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There are limited studies describing the epidemiology and outcomes in children and young adults receiving continuous kidney replacement therapy (CKRT). We aimed to describe associations between patient characteristics, CKRT prescription, and survival.
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- 2024
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17. Neoadjuvant atezolizumab for resectable non-small cell lung cancer: an open-label, single-arm phase II trial
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Chaft, Jamie E., Oezkan, Filiz, Kris, Mark G., Bunn, Paul A., Wistuba, Ignacio I., Kwiatkowski, David J., Owen, Dwight H., Tang, Yan, Johnson, Bruce E., Lee, Jay M., Lozanski, Gerard, Pietrzak, Maciej, Seweryn, Michal, Byun, Woo Yul, Schulze, Katja, Nicholas, Alan, Johnson, Ann, Grindheim, Jessica, Hilz, Stephanie, Shames, David S., Rivard, Chris, Toloza, Eric, Haura, Eric B., McNamee, Ciaran J., Patterson, G. Alexander, Waqar, Saiama N., Rusch, Valerie W., and Carbone, David P.
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In an ongoing, open-label, single-arm phase II study (NCT02927301), 181 patients with untreated, resectable, stage IB–IIIB non-small cell lung cancer received two doses of neoadjuvant atezolizumab monotherapy. The primary end point was major pathological response (MPR; ≤10% viable malignant cells) in resected tumors without EGFRor ALKalterations. Of the 143 patients in the primary end point analysis, the MPR was 20% (95% confidence interval, 14–28%). With a minimum duration of follow-up of 3 years, the 3-year survival rate of 80% was encouraging. The most common adverse events during the neoadjuvant phase were fatigue (39%, 71 of 181) and procedural pain (29%, 53 of 181), along with expected immune-related toxicities; there were no unexpected safety signals. In exploratory analyses, MPR was predicted using the pre-treatment peripheral blood immunophenotype based on 14 immune cell subsets. Immune cell subsets predictive of MPR in the peripheral blood were also identified in the tumor microenvironment and were associated with MPR. This study of neoadjuvant atezolizumab in a large cohort of patients with resectable non-small cell lung cancer was safe and met its primary end point of MPR ≥ 15%. Data from this single-arm, non-randomized trial suggest that profiles of innate immune cells in pre-treatment peripheral blood may predict pathological response after neoadjuvant atezolizumab, but additional studies are needed to determine whether these profiles can inform patient selection and new therapeutic approaches.
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- 2022
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18. -Sirolimus for Patients With Malignant Perivascular Epithelioid Cell Tumors.
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Wagner, Andrew J, Ravi, Vinod, Riedel, Richard F, Ganjoo, Kristen, Van Tine, Brian A, Chugh, Rashmi, Cranmer, Lee, Gordon, Erlinda M, Hornick, Jason L, Du, Heng, Grigorian, Berta, Schmid, Anita N, Hou, Shihe, Harris, Katherine, Kwiatkowski, David J, Desai, Neil P, and Dickson, Mark A
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- 2021
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19. Association of Early MRI Characteristics With Subsequent Epilepsy and Neurodevelopmental Outcomes in Children With Tuberous Sclerosis Complex
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Hulshof, Hanna M., Kuijf, Hugo J., Kotulska, Katarzyna, Curatolo, Paolo, Weschke, Bernhard, Riney, Kate, Krsek, Pavel, Feucht, Martha, Nabbout, Rima, Lagae, Lieven, Jansen, Anna, Otte, Wim M., Lequin, Maarten H., Sijko, Kamil, Benvenuto, Arianna, Hertzberg, Christoph, Benova, Barbora, Scholl, Theresa, De Ridder, Jessie, Aronica, Eleonora M.A., Kwiatkowski, David J., Jozwiak, Sergiusz, Jurkiewicz, Elzbieta, Braun, Kees, Jansen, Floor E., Ing, J. Anink, Blazejczyk, M., Bongaarts, A.J.Borkowska, Breuillard, D., Chmielewski, D., Dabrowska, M., DomańskaPakieła, D., Gialloreti, L. Emberti, Giannikou, K., Głowacka-Walas, J., Hamieh, L., Iyer, A., Janssen, B., Jaworski, J., Kaczorowska-Frontczak, M., Lehmann, K., Maćkowiak, N., Mills, J.D., Moavero, R., Muelebner, A., de Ridder, J., Sadowski, K., Scheldeman, C., Scholl, T., Sciuto, A., Słowińska, M., Tempes, A., van Scheppingen, J., Verhelle, B., Vervisch, J., and Urbańska, M.
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- 2022
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20. Modifying the Renal Angina Index for Predicting AKI and Related Adverse Outcomes in Pediatric Heart Surgery
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Gist, Katja M, SooHoo, Megan, Mack, Emily, Ricci, Zaccaria, Kwiatkowski, David M, Cooper, David S, Krawczeski, Catherine D, Alten, Jeffrey A, Goldstein, Stuart L, and Basu, Rajit K
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Background:Reliable prediction of severe acute kidney injury (AKI) and related poor outcomes has the potential to optimize treatment. The purpose of this study was to modify the renal angina index in pediatric cardiac surgery to predict severe AKI and related poor outcomes. Methods:We performed a multicenter retrospective study with the population divided into a derivation and validation cohort to assess the performance of a modified renal angina index assessed at 8 h after cardiac intensive care unit (CICU) admission to predict a complex outcome of severe day 3 AKI or related poor outcomes (ventilation duration >7 days, CICU length of stay >14 days, and mortality). The derivation sample was used to determine the optimal cut-off value. Results:There were 298 and 299 patients in the derivation and validation cohorts, respectively. The incidence of severe day 3 AKI and the complex outcome was 1.7% and 28% in the derivation and validation cohort. The sensitivity analysis for fulfillment of renal angina was a score >8 with a sensitivity of 63%, specificity of 73%, and negative predictive value of 83%. The cardiac renal angina index predicted the composite outcome with an area under the curve of 0.7 (95% confidence interval: 0.62-0.78). Renal angina patients had a significantly higher probability of the complex outcome when compared to individual risk and injury categories. Conclusions:We operationalized the renal angina index for use after cardiac surgery. Further revision and modification of the construct with integration of biomarkers in a prospective cohort are necessary to refine the prediction model.
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- 2022
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21. Lymphangioleiomyomatosis (LAM) Cell Atlas
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Du, Yina, Guo, Minzhe, Wu, Yixin, Wagner, Andrew, Perl, Anne Karina, Wikenheiser-Brokamp, Kathryn, Yu, Jane, Gupta, Nishant, Kopras, Elizabeth, Krymskaya, Vera, Obraztsova, Kseniya, Tang, Yan, Kwiatkowski, David, Henske, Elizabeth P, McCormack, Francis, and Xu, Yan
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Lymphangioleiomyomatosis (LAM) is a rare lung disease of women, causing cystic remodelling of the lung and progressive respiratory failure. The cellular composition, microenvironment and cellular interactions within the LAM lesion remain unclear. To facilitate data sharing and collaborative LAM research, we performed an integrative analysis of single-cell data compiled from lung, uterus and kidney of patients with LAM from three research centres and developed an LAM Cell Atlas (LCA) Web-Portal. The LCA offers a variety of interactive options for investigators to search, visualise and reanalyse comprehensive single-cell multiomics data sets to reveal dysregulated genetic programmes at transcriptomic, epigenomic and cell–cell connectome levels.
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- 2023
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22. Sporadic facial angiofibroma and sporadic angiomyolipoma mimicking tuberous sclerosis complex
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Klonowska, Katarzyna, Thiele, Elizabeth A, Grevelink, Joannes M, Thorner, Aaron R, and Kwiatkowski, David J
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Tuberous sclerosis complex (TSC) is a genetic syndrome due to mutations in either TSC1or TSC2, leading to the development of hamartomatous tumours at multiple body sites, including facial skin (facial angiofibroma (FAF)), brain (cortical tubers) and kidney (angiomyolipoma (AML)). In this report, we describe an individual with minimal TSC clinical features, who had ‘no mutation identified’ (NMI) by prior genetic testing in a clinical laboratory. Our massively parallel sequencing (MPS) analysis of multiple samples from different body sites and tumours (including blood, saliva, normal skin, AML and FAF) revealed an extraordinary situation in which FAF and AML had completely independent inactivating biallelic variants in TSC2,not present in other matched samples. This suggests that the two different lesions (AML and FAF) are not due to the same underlying germline or mosaic mutation, rather both are likely sporadic events. This case demonstrates the relevance of thorough clinical examination, high-coverage MPS of multiple tumours and matched normal tissues, and appropriate genetic counselling for individuals with marginal TSC features and possible TSC1or TSC2mosaicism.
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- 2022
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23. Characteristics and Surgical Outcomes of Patients With Late Presentation of Anomalous Left Coronary Artery From the Pulmonary Artery: A Multicenter Study.
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Kwiatkowski, David M., Mastropietro, Christopher W., Cashen, Katherine, Chiwane, Saurabh, Flores, Saul, Iliopoulos, Ilias, Karki, Karan B., Migally, Karl, Radman, Monique R., Riley, Christine M., Sassalos, Peter, Smerling, Jennifer, Costello, John M., and Collaborative Research from the Pediatric Cardiac Intensive Care Society Investigators
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We sought to describe the clinical course and outcomes of patients who are diagnosed with anomalous left coronary artery from the pulmonary artery (ALCAPA) after infancy. We conducted a retrospective evaluation of patients who underwent ALCAPA surgery between January 2009 to March 2018 at 21 US centers. Clinical presentation, inpatient management, and postoperative outcomes of patients repaired ≥1 year of age were described. To characterize this cohort, we compared these data to patients repaired before 1 year of age. Of 248 ALCAPA patients, 71 (29%) underwent repair ≥1 year of age. Among this subset, the median age at diagnosis was 8.3 years. Chronic arrhythmia occurred in 7%. Patients had good postoperative recovery of left ventricle (LV) dysfunction (90%) and LV dilation (75%), although a low incidence of recovery of mitral regurgitation (40%). Compared to infants, older patients were more likely to present with cardiac arrest (11% vs 1%) and less likely to have moderate or worse LV dysfunction or mitral regurgitation. Older patients had significantly less postoperative extracorporeal membrane oxygenation use, and shorter ICU and hospital stay. In the older cohort, operative mortality occurred in only 1 patient and no patient died after discharge (median follow-up 2.7 years). Survival of patients who presented with ALCAPA beyond infancy was excellent, although chronic mitral regurgitation and chronic arrhythmia were not uncommon. Patients who underwent ALCAPA repair ≥1 year of age were less likely to present with LV dysfunction but more likely to present with cardiac arrest than younger patients. [ABSTRACT FROM AUTHOR]
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- 2021
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24. GUIDANCE: Primary Results of a Prospective, Observational Clinical Study Evaluating the Performance of Urinary Neutrophil Gelatinase-Associated Lipocalin (NGAL) in the Risk Assessment of AKI in Pediatric ICU Patients
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Goldstein, Stuart, Menon, Shina, Gist, Katja M., Soohoo, Megan, Afonso, Natasha, Kwiatkowski, David M., Mastropietro, Christopher W., Askenazi, David J., Beng, Hostensia M., Kizilbash, Sarah J., Basalely, Abby M., Traum, Avi, and Fitzgerald, Julie C.
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- 2023
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25. Systemic Absorption of Lidocaine from Continuous Erector Spinae Plane Catheters After Congenital Cardiac Surgery: A Retrospective Study.
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Caruso, Thomas J., Lin, Carole, O'Connell, Chloe, Weiss, David, MD, Gail Boltz, Wu, May, Kwiatkowski, David, Maeda, Katsuhide, and Tsui, Ban C.H.
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Objectives: To examine postoperative serum lidocaine levels in patients with intermittent lidocaine bolus erector spinae plane block (ESPB) catheters after cardiac surgery with or without cardiopulmonary bypass (CPB). Design: A retrospective study. Setting: Single-center pediatric quaternary teaching hospital. Participants: Patients who received ESPB catheters after congenital cardiac surgery from April 2018 to March 2019. Interventions: Postoperative serum lidocaine levels were extracted from the record. Measurements and Main Results: Twenty-seven of 40 patients were included in the final analyses (19 with CPB and 8 with no CPB, age 1-47 years, undergoing congenital heart repair). Patients who received ropivacaine or were missing data were excluded. The initial intraoperative bolus of lidocaine ranged from 0- to- 3.72 mg/kg, and the range of postoperative intermittent lidocaine boluses ranged from 0.35- to- 0.83 mg/kg, which were administered every hour. Serum lidocaine levels were measured by the hospital laboratory and ranged from <0.05- to- 3.0 μg/mL in the CPB group and from <0.05- to- 3.2 μg/mL in the no- CPB group. CPB was not associated with differences in lidocaine levels when controlling for time (P = 0.529). Lidocaine concentrations ranged from 0.50- to- 1.68 μg/mL in the CPB group and 0.86- to- 2.07 μg/mL in the no- CPB group. There was a normally distributed overall mean peak level of 1.818 ± standard deviation of 0.624 μg/mL, with 95% confidence interval of 0.57- to- 3.06 μg/mL. No patients had clinical signs of toxicity. Conclusion: Postoperative serum lidocaine concentrations did not appreciably differ due to CPB. Serum lidocaine concentrations did not reach near- toxic doses despite the presence of additional lidocaine in the cardioplegia. The results suggested that lidocaine for ESPBs after cardiac surgery is below systemic toxic range at the doses described. [ABSTRACT FROM AUTHOR]
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- 2020
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26. The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
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Ricketts, Christopher J., De Cubas, Aguirre A., Fan, Huihui, Smith, Christof C., Lang, Martin, Reznik, Ed, Bowlby, Reanne, Gibb, Ewan A., Akbani, Rehan, Beroukhim, Rameen, Bottaro, Donald P., Choueiri, Toni K., Gibbs, Richard A., Godwin, Andrew K., Haake, Scott, Hakimi, A. Ari, Henske, Elizabeth P., Hsieh, James J., Ho, Thai H., Kanchi, Rupa S., Krishnan, Bhavani, Kwiatkowski, David J., Liu, Wenbin, Merino, Maria J., Mills, Gordon B., Myers, Jerome, Nickerson, Michael L., Reuter, Victor E., Schmidt, Laura S., Shelley, C. Simon, Shen, Hui, Shuch, Brian, Signoretti, Sabina, Srinivasan, Ramaprasad, Tamboli, Pheroze, Thomas, George, Vincent, Benjamin G., Vocke, Cathy D., Wheeler, David A., Yang, Lixing, Kim, William Y., Robertson, A. Gordon, Spellman, Paul T., Rathmell, W. Kimryn, and Linehan, W. Marston
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- 2024
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27. Intraoperative Methadone Is Associated with Decreased Perioperative Opioid Use Without Adverse Events: A Case-Matched Cohort Study.
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Robinson, Joshua D., Caruso, Thomas J., Wu, May, Kleiman, Zachary I., and Kwiatkowski, David M.
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To determine if there is an association of intraoperative methadone use and total perioperative opioid exposure in patients undergoing congenital heart surgeries. Retrospective, case-match cohort study. Single center quaternary care teaching hospital. Seventy-four patients with congenital heart disease (CHD) undergoing surgical repair or palliative surgery. Thirty-seven patients undergoing CHD surgeries receiving intraoperative methadone were matched to 37 patients based upon age and procedure who did not receive intraoperative methadone. The primary study outcome was to evaluate total opioid use in intravenous milligrams of morphine equivalents per kilogram (mg ME/kg) within the first 36-hours postoperatively. Mann-Whitney U test was used to compare total opioid exposure. The total opioid use was compared between groups. The methadone cohort required less opioids intraoperatively, in the first 12 hours postoperatively, and during the first 36 hours postoperatively (2.51 v 4.39 mg ME/kg, p < 0.001; 0.43 v 1.28 mg ME/kg, p = 0.001; and 0.83 v 1.91 mg ME/kg, p < 0.001) compared with the matched control cohort. There were no differences in clinical outcomes or adverse events. A dose-dependent reduction in opioid consumption in high- versus low-dose groups also was not observed. Intraoperative methadone use was associated with a decrease in perioperative opioid exposure in patients undergoing congenital heart surgery and was not associated with adverse events or prolonged durations of mechanical ventilation or ICU stay. [ABSTRACT FROM AUTHOR]
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- 2020
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28. Subependymal giant cell astrocytomas are characterized by mTORC1 hyperactivation, a very low somatic mutation rate, and a unique gene expression profile
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Giannikou, Krinio, Zhu, Zachary, Kim, Jaegil, Winden, Kellen D., Tyburczy, Magdalena E., Marron, David, Parker, Joel S., Hebert, Zachary, Bongaarts, Anika, Taing, Len, Long, Henry W., Pisano, William V., Alexandrescu, Sanda, Godlewski, Brianna, Nellist, Mark, Kotulska, Katarzyna, Jozwiak, Sergiusz, Roszkowski, Marcin, Mandera, Marek, Thiele, Elizabeth A., Lidov, Hart, Getz, Gad, Devinsky, Orrin, Lawrence, Michael S., Ligon, Keith L., Ellison, David W., Sahin, Mustafa, Aronica, Eleonora, Meredith, David M., and Kwiatkowski, David J.
- Abstract
Subependymal giant-cell astrocytomas (SEGAs) are slow-growing brain tumors that are a hallmark feature seen in 5–10% of patients with Tuberous Sclerosis Complex (TSC). Though histologically benign, they can cause serious neurologic symptoms, leading to death if untreated. SEGAs consistently show biallelic loss of TSC1or TSC2. Herein, we aimed to define other somatic events beyond TSC1/TSC2loss and identify potential transcriptional drivers that contribute to SEGA formation. Paired tumor-normal whole-exome sequencing was performed on 21 resected SEGAs from 20 TSC patients. Pathogenic variants in TSC1/TSC2were identified in 19/21 (90%) SEGAs. Copy neutral loss of heterozygosity (size range: 2.2–46?Mb) was seen in 76% (16/21) of SEGAs (44% chr9q and 56% chr16p). An average of 1.4 other somatic variants (range 0–7) per tumor were identified, unlikely of pathogenic significance. Whole transcriptome RNA-sequencing analyses revealed 190 common differentially expressed genes in SEGA (n?=?16, 13 from a prior study) in pairwise comparison to each of: low grade diffuse gliomas (n?=?530) and glioblastoma (n?=?171) from The Cancer Genome Atlas (TCGA) consortium, ganglioglioma (n?=?10), TSC cortical tubers (n?=?15), and multiple normal tissues. Among these, homeobox transcription factors (TFs) HMX3, HMX2, VAX1, SIX3;and TFs IRF6and EOMESwere all expressed >12-fold higher in SEGAs (FDR/q-value?0.05). Immunohistochemistry supported the specificity of IRF6, VAX1, SIX3 for SEGAs in comparison to other tumor entities and normal brain. We conclude that SEGAs have an extremely low somatic mutation rate, suggesting that TSC1/TSC2loss is sufficient to drive tumor growth. The unique and highly expressed SEGA-specific TFs likely reflect the neuroepithelial cell of origin, and may also contribute to the transcriptional and epigenetic state that enables SEGA growth following two-hit loss of TSC1or TSC2and mTORC1 activation.
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- 2021
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29. Subependymal giant cell astrocytomas are characterized by mTORC1 hyperactivation, a very low somatic mutation rate, and a unique gene expression profile
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Giannikou, Krinio, Zhu, Zachary, Kim, Jaegil, Winden, Kellen D., Tyburczy, Magdalena E., Marron, David, Parker, Joel S., Hebert, Zachary, Bongaarts, Anika, Taing, Len, Long, Henry W., Pisano, William V., Alexandrescu, Sanda, Godlewski, Brianna, Nellist, Mark, Kotulska, Katarzyna, Jozwiak, Sergiusz, Roszkowski, Marcin, Mandera, Marek, Thiele, Elizabeth A., Lidov, Hart, Getz, Gad, Devinsky, Orrin, Lawrence, Michael S., Ligon, Keith L., Ellison, David W., Sahin, Mustafa, Aronica, Eleonora, Meredith, David M., and Kwiatkowski, David J.
- Abstract
Subependymal giant-cell astrocytomas (SEGAs) are slow-growing brain tumors that are a hallmark feature seen in 5–10% of patients with Tuberous Sclerosis Complex (TSC). Though histologically benign, they can cause serious neurologic symptoms, leading to death if untreated. SEGAs consistently show biallelic loss of TSC1or TSC2. Herein, we aimed to define other somatic events beyond TSC1/TSC2loss and identify potential transcriptional drivers that contribute to SEGA formation. Paired tumor-normal whole-exome sequencing was performed on 21 resected SEGAs from 20 TSC patients. Pathogenic variants in TSC1/TSC2were identified in 19/21 (90%) SEGAs. Copy neutral loss of heterozygosity (size range: 2.2–46 Mb) was seen in 76% (16/21) of SEGAs (44% chr9q and 56% chr16p). An average of 1.4 other somatic variants (range 0–7) per tumor were identified, unlikely of pathogenic significance. Whole transcriptome RNA-sequencing analyses revealed 190 common differentially expressed genes in SEGA (n= 16, 13 from a prior study) in pairwise comparison to each of: low grade diffuse gliomas (n= 530) and glioblastoma (n= 171) from The Cancer Genome Atlas (TCGA) consortium, ganglioglioma (n= 10), TSC cortical tubers (n= 15), and multiple normal tissues. Among these, homeobox transcription factors (TFs) HMX3, HMX2, VAX1, SIX3;and TFs IRF6and EOMESwere all expressed >12-fold higher in SEGAs (FDR/q-value < 0.05). Immunohistochemistry supported the specificity of IRF6, VAX1, SIX3 for SEGAs in comparison to other tumor entities and normal brain. We conclude that SEGAs have an extremely low somatic mutation rate, suggesting that TSC1/TSC2loss is sufficient to drive tumor growth. The unique and highly expressed SEGA-specific TFs likely reflect the neuroepithelial cell of origin, and may also contribute to the transcriptional and epigenetic state that enables SEGA growth following two-hit loss of TSC1or TSC2and mTORC1 activation.
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- 2021
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30. MITFis a driver oncogene and potential therapeutic target in kidney angiomyolipoma tumors through transcriptional regulation of CYR61
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Zarei, Mahsa, Giannikou, Krinio, Du, Heng, Liu, Heng-Jia, Duarte, Melissa, Johnson, Sneha, Nassar, Amin H., Widlund, Hans R., Henske, Elizabeth P., Long, Henry W., and Kwiatkowski, David J.
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Tuberous sclerosis complex (TSC) is an autosomal dominant tumor suppressor syndrome, characterized by tumor development in multiple organs, including renal angiomyolipoma. Biallelic loss of TSC1or TSC2is a known genetic driver of angiomyolipoma development, however, whether an altered transcriptional repertoire contributes to TSC-associated tumorigenesis is unknown. RNA-seq analyses showed that MITFA isoform (MITF-A) was consistently highly expressed in angiomyolipoma, immunohistochemistry showed microphthalmia-associated transcription factor nuclear localization, and Chromatin immuno-Precipitation Sequencing analysis showed that the MITF-Atranscriptional start site was highly enriched with H3K27ac marks. Using the angiomyolipoma cell line 621-101, MITFknockout (MITF.KO) and MITF-Aoverexpressing (MITF.OE) cell lines were generated. MITF.KOcells showed markedly reduced growth and invasion in vitro, and were unable to form xenografted tumors. In contrast, MITF.OEcells grew faster in vitro and as xenografted tumors compared to control cells. RNA-Seq analysis showed that both ID2and Cysteine-rich angiogenic inducer 61 (CYR61) expression levels were increased in the MITF.OEcells and reduced in the MITF.KOcells, and luciferase assays showed this was due to transcriptional effects. Importantly, CYR61overexpression rescued MITF.KOcell growth in vitro and tumor growth in vivo. These findings suggest that MITF-Ais a transcriptional oncogenic driver of angiomyolipoma tumor development, acting through regulation of CYR61.
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- 2021
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31. The Use of Clevidipine for Hypertension in Pediatric Patients Receiving Mechanical Circulatory Support
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Wu, May, Ryan, Kathleen R., Rosenthal, David N., Jahadi, Ozzie, Moss, Jeffrey, and Kwiatkowski, David M.
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- 2020
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32. Round Robin Evaluation of MET Protein Expression in Lung Adenocarcinomas Improves Interobserver Concordance
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Boyle, Theresa A., Khalil, Farah K., Mino-Kenudson, Mari, Sica, Gabriel L., Moreira, Andre L., Sholl, Lynette M., Knight, Mirna Z., Zhang, Liping, Saller, James, Varella-Garcia, Marileila, Berry, Lynne D., Chen, Heidi, Ellison, Kim E., Rivard, Christopher J., Kugler, Kelly, Wistuba, Ignacio I., Fujimoto, Junya, Kwiatkowski, David J., Bunn, Paul A., Kris, Mark G., Haura, Eric B., and Hirsch, Fred R.
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- 2020
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33. Myelin Pathology Beyond White Matter in Tuberous Sclerosis Complex (TSC) Cortical Tubers.
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Mühlebner, Angelika, van Scheppingen, Jackelien, de Neef, Andrew, Bongaarts, Anika, Zimmer, Till S, Mills, James D, Jansen, Floor E, Spliet, Wim G M, Krsek, Pavel, Zamecnik, Josef, Coras, Roland, Blumcke, Ingmar, Feucht, Martha, Scholl, Theresa, Gruber, Victoria-Elisabeth, Hainfellner, Johannes A, Söylemezoğlu, Figen, Kotulska, Katarzyna, Lagae, Lieven, Jansen, Anna C, Kwiatkowski, David J, Jozwiak, Sergiusz, Curatolo, Paolo, and Aronica, Eleonora
- Abstract
Tuberous sclerosis complex (TSC) is a monogenetic disease that arises due to mutations in either the TSC1 or TSC2 gene and affects multiple organ systems. One of the hallmark manifestations of TSC are cortical malformations referred to as cortical tubers. These tubers are frequently associated with treatment-resistant epilepsy. Some of these patients are candidates for epilepsy surgery. White matter abnormalities, such as loss of myelin and oligodendroglia, have been described in a small subset of resected tubers but mechanisms underlying this phenomenon are unclear. Herein, we analyzed a variety of neuropathologic and immunohistochemical features in gray and white matter areas of resected cortical tubers from 46 TSC patients using semi-automated quantitative image analysis. We observed divergent amounts of myelin basic protein as well as numbers of oligodendroglia in both gray and white matter when compared with matched controls. Analyses of clinical data indicated that reduced numbers of oligodendroglia were associated with lower numbers on the intelligence quotient scale and that lower amounts of myelin-associated oligodendrocyte basic protein were associated with the presence of autism-spectrum disorder. In conclusion, myelin pathology in cortical tubers extends beyond the white matter and may be linked to cognitive dysfunction in TSC patients.
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- 2020
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34. Prevalence of pathogenic germline cancer risk variants in high-risk urothelial carcinoma
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Nassar, Amin H., Abou Alaiwi, Sarah, AlDubayan, Saud H., Moore, Nicholas, Mouw, Kent W., Kwiatkowski, David J., Choueiri, Toni K., Curran, Catherine, Berchuck, Jacob E., Harshman, Lauren C., Nuzzo, Pier V., Chanza, Nieves Martinez, Van Allen, Eliezer, Esplin, Edward D., Yang, Shan, Callis, Thomas, Garber, Judy E., Rana, Huma Q., and Sonpavde, Guru
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Purpose: To date, there has not been a large, systematic evaluation of the prevalence of germline risk variants in urothelial carcinoma (UC). Methods: We evaluated the frequency of germline pathogenic and likely pathogenic variants in 1038 patients with high-risk UC who underwent targeted clinical germline testing. Case–control enrichment analysis was performed to screen for pathogenic variant enrichment in 17 DNA repair genes in 1038 UC patients relative to cancer-free individuals. Results: Among 1038 patients with UC, the cumulative frequency of patients with pathogenic variants was 24%; 18.6% of patients harbored =1 actionable germline variant with preventive or therapeutic utility. MSH2(34/969, 3.5%) and BRCA1/2(38/867, 4.4%) germline variants had the highest frequency. Germline variants in DNA damage repair genes accounted for 78% of pathogenic germline variants. Compared to the cancer-free cohort, UC patients had significant variant enrichment in MSH2(odds ratio [OR]: 15.4, 95% confidence interval [CI]: 7.1–32.7, p?<?0.0001), MLH1(OR: 15.9, 95% CI: 4.4–67.7, p?<?0.0001), BRCA2(OR: 5.7, 95% CI: 3.2–9.6, p?<?0.0001), and ATM(OR: 3.8, 95% CI: 1.8–8.3, p?=?0.02). Conclusion: In this study, 24% of UC patients harbored pathogenic germline variants and 18.6% had clinically actionable variants. MLH1and MSH2were validated as UC risk genes while ATMand BRCA2were highlighted as potential UC predisposition genes. This work emphasizes the utility of germline testing in selected high-risk UC cohorts.
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- 2020
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35. Prevalence of pathogenic germline cancer risk variants in high-risk urothelial carcinoma
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Nassar, Amin H., Abou Alaiwi, Sarah, AlDubayan, Saud H., Moore, Nicholas, Mouw, Kent W., Kwiatkowski, David J., Choueiri, Toni K., Curran, Catherine, Berchuck, Jacob E., Harshman, Lauren C., Nuzzo, Pier V., Chanza, Nieves Martinez, Van Allen, Eliezer, Esplin, Edward D., Yang, Shan, Callis, Thomas, Garber, Judy E., Rana, Huma Q., and Sonpavde, Guru
- Abstract
To date, there has not been a large, systematic evaluation of the prevalence of germline risk variants in urothelial carcinoma (UC).
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- 2020
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36. Tumors with TSC mutations are sensitive to CDK7 inhibition through NRF2 and glutathione depletion
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Zarei, Mahsa, Du, Heng, Nassar, Amin H., Yan, Rachel E., Giannikou, Krinio, Johnson, Sneha H., Lam, Hilaire C., Henske, Elizabeth P., Wang, Yubao, Zhang, Tinghu, Asara, John, and Kwiatkowski, David J.
- Abstract
Tuberous sclerosis complex (TSC) is characterized by tumor development in the brain, heart, kidney, and lungs. In TSC tumors, loss of the TSC1/TSC2 protein complex leads to activation of mTORC1 with downstream effects on anabolism and cell growth. Because mTORC1 activation enhances mRNA transcription, we hypothesized that aberrant mTORC1 activation might confer TSC-null cell dependence on transcriptional regulation. We demonstrate that TSC1- or TSC2-null cells, in contrast to their wild-type counterparts, are sensitive to pharmacological inhibition of CDK7. Mechanistic studies revealed that CDK7 inhibition markedly reduces glutathione levels and increases reactive oxygen species due to reduced expression of NRF2 and glutathione biosynthesis genes. Treatment of both Tsc2+/− mice and a TSC1-null bladder cancer xenograft model with a CDK7 inhibitor showed marked reduction in tumor volume and absence of regrowth in the xenograft model. These results suggest that CDK7 inhibition is a promising therapeutic approach for treatment of TSC-associated tumors and cancers with mutations in either TSC1 or TSC2.
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- 2019
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37. Vasoplegia after pediatric cardiac transplantation in patients supported with a continuous flow ventricular assist device.
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Sacks, Loren D., Hollander, Seth A., Zhang, Yulin, Ryan, Kathleen R., Ford, Mackenzie A., Maeda, Katsuhide, Murray, Jenna M., Almond, Christopher S., and Kwiatkowski, David M.
- Abstract
To determine the association between continuous flow ventricular assist devices and the incidence of vasoplegia following orthotopic heart transplant in children. Moreover, to propose a novel clinical definition of vasoplegia for use in pediatric populations. This is a single-center, retrospective cohort study set in the cardiovascular intensive care unit of a tertiary children's hospital. All patients aged 3 years and older who underwent orthotopic heart transplant at Stanford University between April 1, 2014, and July 31, 2017, were included. Vasoplegia was defined by the use of vasoconstrictive medication, diastolic hypotension, preserved systolic heart function, and absence of infection or right atrial pressure or central venous pressure <5 mm Hg. Of 44 eligible patients, 21 were supported using a continuous flow ventricular assist device. Following heart transplant, 14 patients (32%) developed vasoplegia by the study definition. Development of vasoplegia was associated with pretransplant use of a continuous flow ventricular assist device (52% vs 13%) with a relative risk of 4.02 (95% confidence interval, 1.30-12.45; P =.009). No other variables were predictive of vasoplegia in univariable analysis. Presence of vasoplegia was not associated with adverse outcomes, although there were trends towards higher incidence of acute kidney injury and increased length of hospital stays. Children receiving continuous flow ventricular assist device support are at increased risk for vasoplegia following orthotopic heart transplant, using a novel definition of vasoplegia. Anticipation of this complication will allow for prompt intervention, thereby minimizing hemodynamic instability and impact on patient outcomes. [ABSTRACT FROM AUTHOR]
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- 2019
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38. Consolidation ALK Tyrosine Kinase Inhibitors Versus Durvalumab or Observation After Chemoradiation in Unresectable Stage III ALK-Positive NSCLC
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Nassar, Amin H., Jayakrishnan, Ritujith, Feng, Jamie, Shepherd, Frances, Adib, Elio, Cheung, Justin M., Lin, Jessica J., Liu, Yufei, Lin, Steven H., Parikh, Kaushal, Sridhar, Arthi, Shakya, Purnima, Dilling, Thomas J., Kaldas, David, Gray, Jhanelle E., Lobachov, Anastasiya, Bar, Jair, Luders, Heike, Grohe, Christian, Gupta, Shruti, Leal, Ticiana, Fitzgerald, Bailey, Crowley, Fionnuala, Fujiwara, Yu, Marron, Thomas U., Wilgucki, Molly, Reuss, Joshua, Chen, Luxi, Sankar, Kamya, Aredo, Jacqueline V., Neal, Joel W., Wakelee, Heather A., Thummalapalli, Rohit, Yu, Helena, Whitaker, Ryan, Velazquez, Ana, Ragavan, Meera, Cortellini, Alessio, Kwiatkowski, David J., Naqash, Abdul Rafeh, Goldberg, Sarah B., and Kim, So Yeon
- Abstract
Patients with advanced ALK-positive NSCLC typically have poor response to immunotherapy; the benefit of consolidation durvalumab in patients with unresectable stage III ALK-positive NSCLC remains unclear. Herein, we compare the efficacy and safety of consolidation ALK tyrosine kinase inhibitor (TKI) versus durvalumab or observation after concurrent chemoradiation.
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- 2024
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39. Consolidation Osimertinib Versus Durvalumab Versus Observation After Concurrent Chemoradiation in Unresectable EGFR-Mutant NSCLC: A Multicenter Retrospective Cohort Study
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Nassar, Amin H., Kim, So Yeon, Aredo, Jacqueline V., Feng, Jamie, Shepherd, Frances, Xu, Chao, Kaldas, David, Gray, Jhanelle E., Dilling, Thomas J., Neal, Joel W., Wakelee, Heather A., Liu, Yufei, Lin, Steven H., Abuali, Tariq, Amini, Arya, Nie, Yunan, Patil, Tejas, Lobachov, Anastasiya, Bar, Jair, Fitzgerald, Bailey, Fujiwara, Yu, Marron, Thomas U., Thummalapalli, Rohit, Yu, Helena, Owen, Dwight H., Sharp, John, Farid, Saira, Rocha, Pedro, Arriola, Edurne, D’Aiello, Angelica, Cheng, Haiying, Whitaker, Ryan, Parikh, Kaushal, Ashara, Yash, Chen, Luxi, Sankar, Kamya, Harris, Jeremy P., Nagasaka, Misako, Ayanambakkam, Adanma, Manana, Ana I., Ragavan, Meera, Lin, Jessica J., Piotrowska, Zofia, Wilgucki, Molly, Reuss, Joshua, Luders, Heike, Grohe, Christian, Espinar, Javier Baena, Feiner, Ella, Punekar, Salman R., Gupta, Shruti, Leal, Ticiana, Kwiatkowski, David J., Mak, Raymond H., Adib, Elio, Naqash, Abdul Rafeh, and Goldberg, Sarah B.
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Durvalumab improves survival when used as consolidation therapy after chemoradiation (CRT) in patients with stage III NSCLC. Nevertheless, the optimal consolidation therapy for patients with EGFR-mutant (EGFRmut) stage III NSCLC remains unknown.
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- 2024
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40. An Evaluation of the Outcomes Associated with Peritoneal Catheter Use in Neonates Undergoing Cardiac Surgery: A Multicenter Study
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Kwiatkowski, David M., Alten, Jeffrey A., Mah, Kenneth E., Selewski, David T., Raymond, Tia T., Afonso, Natasha S., Blinder, Joshua J., Coghill, Matthew T., Cooper, David S., Koch, Joshua D., Krawczeski, Catherine D., Morales, David L.S., Neumayr, Tara M., Rahman, AKM Fazlur, Reichle, Garret, Tabbutt, Sarah, Webb, Tennille N., Borasino, Santiago, Zang, Huaiyu, Winlaw, David, Bailly, David, Goldstein, Stuart, Gist, Katja, Brandewie, Katie L., Bhat, Priya N., Diddle, John W., Ghbeis, Muhammad, Prodhan, Parthak, Garcia, Xiomara, Ramer, Shannon, Albertson, Mindy, Rodriquez, Zahidee, Lukacs, Mary, Gaies, Michael, Freytag, Joshua, Sammons, Amanda, Abraha, Hideat, Butcher, John, Zanaboni, Dominic, Sanchez de Toledo, Joan, Domnina, Yuliya A., Saenz, Lucas, Baust, Tracy, Kluck, Jane, Sasaki, Jun, Raees, Aanish, O'Neil, Erika R., Lasa, Javier J., Phillips, Patrick A., Hock, Kristal M., Valentine, Kevin, Tadphale, Sachin, Buckley, Jason R., Schroeder, Luke, Clarke, Shanelle, Zhang, Wenying, Smith, Andrew, Absi, Mohammed, Askenazi, David J., Phillips, Patrick A., Hock, Kristal M., Askenazi, David J., Prodhan, Parthak, Garcia, Xiomara, Ramer, Shannon, Albertson, Mindy, Clarke, Shanelle, Rodriquez, Zahidee, Ghbeis, Muhammad, Sasaki, Jun, Brandewie, Katie L., Lukacs, Mary, Gist, Katja, Gaies, Michael, Freytag, Joshua, Sammons, Amanda, Abraha, Hideat, Butcher, John, Raees, Aanish, Zanaboni, Dominic, Sanchez de Toledo, Joan, Domnina, Yuliya A., Baust, Tracy, Saenz, Lucas, Diddle, John W., Kluck, Jane, Duncan, Linda, Bertrandt, Rebecca A., Sosa, Lisa J., Bhat, Priya N., O’Neal, Erika R., Lasa, Javier J., Valentine, Kevin, Buckley, Jason R., Schroeder, Luke, Doman, Tammy, Viers, Suzanne, Zhang, Wenying, Smith, Andrew H., Tadphale, Sachin, Absi, Mohammed, and Bailly, David K.
- Abstract
To determine if intraoperative peritoneal catheter (PC) placement is associated with improved outcomes in neonates undergoing high-risk cardiac surgery with cardiopulmonary bypass.
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- 2024
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41. Association of dead space ventilation and prolonged ventilation after repair of tetralogy of Fallot with pulmonary atresia.
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Koth, Andrew M., Kwiatkowski, David M., Lim, Tiffany R., Bauser-Heaton, Holly, Asija, Ritu, McElhinney, Doff B., Hanley, Frank L., and Krawczeski, Catherine D.
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Background We set out to determine whether patients with tetralogy of Fallot with pulmonary atresia and major aortopulmonary collateral arteries (TOF/PA/MAPCA) are at risk for elevated dead space ventilation fraction (VD/VT), and whether this is associated with prolonged mechanical ventilation. We hypothesized that elevated VD/VT (>20%) in the first 24 hours after unifocalization surgery is associated with increased risk for prolonged mechanical ventilation (>7 days). Methods All patients with TOF/PA/MAPCA undergoing unifocalization surgery between January 2003 and December 2015 were included in this study. Average VD/VT was calculated over the first 24 hours after surgery. Demographic and surgical data were collected. Outcome data included duration of mechanical ventilation. Patients were separated into 2 groups: elevated VD/VT and normal DVSF. Groups were compared using the Student t test, Wilcoxon rank-sum test, and χ 2 test. Univariable and multivariable regression analyses were performed with VD/VT as a continuous variable to test for association. Results Of the 265 included patients, 127 (48%) had an elevated VD/VT. The 2 groups did not differ significantly in any demographic characteristic. Patients with an elevated VD/VT had longer cardiopulmonary bypass times ( P = .03), were more likely to have delayed sternal closure, and more likely to have prolonged respiratory failure (odds ratio, 2.2; 95% confidence interval, 1.2-4.0; P = .007). The percent VD/VT was associated with duration of mechanical ventilation in univariable ( P < .001) and multivariable ( P < .001) regression analyses when controlled for age, weight and bypass time. Conclusions Elevated postoperative VD/VT is associated with prolonged mechanical ventilation in patients with TOF/PA/MAPCA following unifocalization. Elevated postoperative VD/VT may be an early indicator of patients who will require prolonged duration of mechanical ventilation, allowing optimization of medical management to promote better outcomes. [ABSTRACT FROM AUTHOR]
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- 2018
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42. Acute Kidney Injury in Children.
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Sutherland, Scott M. and Kwiatkowski, David M.
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- 2017
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43. Rasburicase versus intravenous allopurinol for non-malignancy-associated acute hyperuricemia in paediatric cardiology patients
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Moss, Jeffrey D., Wu, May, Axelrod, David M., and Kwiatkowski, David M.
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AbstractObjectives:Limited data exist for management of hyperuricemia in non-oncologic patients, particularly in paediatric cardiac patients. Hyperuricemia is a risk factor for acute kidney injury and may prompt treatment in critically ill patients. The primary objective was to determine if rasburicase use was associated with greater probability normalisation of serum uric acid compared to allopurinol. Secondary outcomes included percent reduction in uric acid, changes in serum creatinine, and cost of therapy.Design:A single-centre retrospective chart review.Setting:A 20-bed quaternary cardiovascular ICU in a university-based paediatric hospital in California.Patients:Patients admitted to cardiovascular ICU who received rasburicase or intravenous allopurinol between 2015 and 2016.Interventions:None.Measurements and main results:Data from a cohort of 14 patients receiving rasburicase were compared to 7 patients receiving IV allopurinol. Patients who were administered rasburicase for hyperuricemia were more likely to have a post-treatment uric acid level less than 8 mg/dl as compared to IV allopurinol (100 versus 43%; p = 0.0058). Patients who received rasburicase had a greater absolute reduction in post-treatment day 1 uric acid (−9 mg/dl versus −1.9 mg/dl; p = 0.002). There were no differences in post-treatment day 3 or day 7 serum creatinine or time to normalisation of serum creatinine. The cost of therapy normalised to a 20 kg patient was greater in the allopurinol group ($18,720 versus $1928; p = 0.001).Conclusion:In a limited paediatric cardiac cohort, the use of rasburicase was associated with a greater reduction in uric acid levels and associated with a lower cost compared to IV allopurinol.
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- 2019
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44. MET IHC Is a Poor Screen for METAmplification or METExon 14 Mutations in Lung Adenocarcinomas: Data from a Tri-Institutional Cohort of the Lung Cancer Mutation Consortium
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Guo, Robin, Berry, Lynne D., Aisner, Dara L., Sheren, Jamie, Boyle, Theresa, Bunn, Paul A., Johnson, Bruce E., Kwiatkowski, David J., Drilon, Alexander, Sholl, Lynette M., and Kris, Mark G.
- Abstract
MNNG HOS Transforming gene (MET) amplification and METexon 14 (METex14) alterations in lung cancers affect sensitivity to MET proto-oncogene, receptor tyrosine kinase (MET [also known by the alias hepatocyte growth factor receptor]) inhibitors. Fluorescence in situ hybridization (FISH), next-generation sequencing (NGS), and immunohistochemistry (IHC) have been used to evaluate MET dependency. Here, we have determined the association of MET IHC with METex14 mutations and METamplification.
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- 2019
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45. Characteristics and Outcomes of Patients With Metastatic KRAS-Mutant Lung Adenocarcinomas: The Lung Cancer Mutation Consortium Experience
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El Osta, Badi, Behera, Madhusmita, Kim, Sungjin, Berry, Lynne D., Sica, Gabriel, Pillai, Rathi N., Owonikoko, Taofeek K., Kris, Mark G., Johnson, Bruce E., Kwiatkowski, David J., Sholl, Lynette M., Aisner, Dara L., Bunn, Paul A., Khuri, Fadlo R., and Ramalingam, Suresh S.
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Mutations in the KRAS gene are the most common driver oncogenes present in lung adenocarcinomas. We analyzed the largest multi-institutional database available containing patients with metastatic KRAS-mutant lung adenocarcinomas.
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- 2019
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46. Assessment of Resistance Mechanisms and Clinical Implications in Patients With EGFR T790M–Positive Lung Cancer and Acquired Resistance to Osimertinib
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Oxnard, Geoffrey R., Hu, Yuebi, Mileham, Kathryn F., Husain, Hatim, Costa, Daniel B., Tracy, Philip, Feeney, Nora, Sholl, Lynette M., Dahlberg, Suzanne E., Redig, Amanda J., Kwiatkowski, David J., Rabin, Michael S., Paweletz, Cloud P., Thress, Kenneth S., and Jänne, Pasi A.
- Abstract
IMPORTANCE: Osimertinib mesylate is used globally to treat EGFR-mutant non–small cell lung cancer (NSCLC) with tyrosine kinase inhibitor resistance mediated by the EGFR T790M mutation. Acquired resistance to osimertinib is a growing clinical challenge that is poorly understood. OBJECTIVE: To understand the molecular mechanisms of acquired resistance to osimertinib and their clinical behavior. DESIGN, SETTING, AND PARTICIPANTS: Patients with advanced NSCLC who received osimertinib for T790M-positive acquired resistance to prior EGFR tyrosine kinase inhibitor were identified from a multi-institutional cohort (n = 143) and a confirmatory trial cohort (NCT01802632) (n = 110). Next-generation sequencing of tumor biopsies after osimertinib resistance was performed. Genotyping of plasma cell-free DNA was studied as an orthogonal approach, including serial plasma samples when available. The study and analysis were finalized on November 9, 2017. MAIN OUTCOMES AND MEASURES: Mechanisms of resistance and their association with time to treatment discontinuation on osimertinib. RESULTS: Of the 143 patients evaluated, 41 (28 [68%] women) had tumor next-generation sequencing after acquired resistance to osimertinib. Among 13 patients (32%) with maintained T790M at the time of resistance, EGFR C797S was seen in 9 patients (22%). Among 28 individuals (68%) with loss of T790M, a range of competing resistance mechanisms was detected, including novel mechanisms such as acquired KRAS mutations and targetable gene fusions. Time to treatment discontinuation was shorter in patients with T790M loss (6.1 vs 15.2 months), suggesting emergence of pre-existing resistant clones; this finding was confirmed in a validation cohort of 110 patients with plasma cell-free DNA genotyping performed after osimertinib resistance. In studies of serial plasma levels of mutant EGFR, loss of T790M at resistance was associated with a smaller decrease in levels of the EGFR driver mutation after 1 to 3 weeks of therapy (100% vs 83% decrease; P = .01). CONCLUSIONS AND RELEVANCE: Acquired resistance to osimertinib mediated by loss of the T790M mutation is associated with early resistance and a range of competing resistance mechanisms. These data provide clinical evidence of the heterogeneity of resistance in advanced NSCLC and a need for clinical trial strategies that can overcome multiple concomitant resistance mechanisms or strategies for preventing such resistance.
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- 2018
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47. Comprehensive Management Considerations of Select Noncardiac Organ Systems in the Cardiac Intensive Care Unit
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Huff, Christin, Mastropietro, Christopher W., Riley, Christine, Byrnes, Jonathan, Kwiatkowski, David M., Ellis, Misty, Schuette, Jennifer, and Justice, Lindsey
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As the acuity and complexity of pediatric patients with congenital cardiac disease have increased, there are many noncardiac issues that may be present in these patients. These noncardiac problems may affect clinical outcomes in the cardiac intensive care unit and must be recognized and managed. The Pediatric Cardiac Intensive Care Society sought to provide an expert review of some of the most common challenges of the respiratory, gastrointestinal, hematological, renal, and endocrine systems in pediatric cardiac patients. This review provides a brief overview of literature available and common practices.
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- 2018
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48. Phase 2, multicenter, open-label basket trial of nab -sirolimus for patients with malignant solid tumors harboring pathogenic inactivating alterations in TSC1 or TSC2 genes (PRECISION I).
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Iyer, Gopa, Deming, Dustin A., Demeure, Michael J., Federman, Noah, McKean, Meredith, Lee, Elizabeth Katherine, Spira, Alexander I., Kwiatkowski, David J., Hussein, Maen A., Gordon, Erlinda Maria, Crockett, David G., Ganjoo, Kristen N., Schulte, Brian, Cranmer, Lee D., Ding, Li, Schmid, Anita N., Navarro, Willis H., and Rodon Ahnert, Jordi
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- 2023
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49. Machine learning (ML)-based quantification of tumor-infiltrating lymphocytes (TIL) and clinical outcomes of patients with melanoma treated with immune-checkpoint inhibitors (ICI).
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Adib, Elio, Rakaee, Mehrdad, Nassar, Amin, Bou Farhat, Elias, Hodi, F. Stephen, and Kwiatkowski, David J.
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- 2023
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50. Artificial intelligence algorithm developed to predict immune checkpoint inhibitors efficacy in non–small-cell lung cancer.
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Rakaee, Mehrdad, Tafavvoghi, Masoud, Adib, Elio, Ricciuti, Biagio, Alessi, Joao Victor Machado, Cortellini, Alessio, Fulgenzi, Claudia A.M., Møllersen, Kajsa, Bongo, Lars Ailo, Hashemi, Sayed MS, Houda, Ilias, Busund, Lill-Tove Rasmussen, Donnem, Tom, Bahce, Idris, Pinato, David J. James, Sholl, Lynette M., Awad, Mark M., and Kwiatkowski, David J.
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- 2023
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